Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001495

Physical Location & Seq

Genomic Coordinates Reverse (-)

12082652 .. 12083406

Gene Structure 755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00090290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGGTGCTTTTCTGAAGCTCATTGACGCCATAACCTTTTTATACTTCATCATAATGGCGATGTCACCGATGGTCAACGCGCAGCTAGTTCTGCCTCCAAGCCTCTTTCCGGAGTGGATGGTGGAGTACAAGAACTGGTACGTCGGCGAGTTCGATCACTATTGCTTTGTGGAGAAGCCTCATTTCATCGTTGGTCTTGTCTTGGTTGAACTTGTATTCCAGTGGCCTCTTGCCCTTGCCAACTTGTATGGCATGTTGGCTGGAAAGTCTTGGTACAACACCACCTGCTTGGTCCATGGCGCCACTTACTTCACCACCATGGTCACCGTGTTAACAGAGATGATTGGTTCTGGCAAGGCATCGAACAAGCTGTTACTGTTCTGCTACCCTTTTTTGGGGTTTACTGTGTTGGCCATGCTGCGTGGGCTGCTGCCGCCGTCAACCTCTACTTCAACAGCCAATGCCACAAAAAAGAAAAGGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2781

Protein Analysis

161

Amino Acids

18.14

Weight (kDa)

8.76

Isoelectric Point (pI)

28.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EBP	PF05241	39 - 119	1.2e-08	EXPERA (EXPanded EBP superfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05210 AT2G32380
fragaria_vesca	FvH4_6g43330 FvH4_6g43370 FvH4_6g43380 FvH4_7g06210
malus_domestica	MD09G1107600.v1.1 MD17G1095200.v1.1 MD17G1095300.v1.1 MD17G1095500.v1.1 MD17G1095800.v1.1
prunus_persica	Prupe.3G218100_v2.0.a1 Prupe.3G218400_v2.0.a1 Prupe.3G218400_v2.0.a1
pyrus_communis	pycom09g02970 pycom17g09170 pycom17g09180 pycom17g09200 pycom17g09210
rosa_chinensis	RchiOBHm_Chr2g0159661 RchiOBHm_Chr2g0159681 RchiOBHm_Chr2g0159721
rosa_laevigata	RLG00000021171 RLG00000021173 RLG00000021174 RLG00000021176
rosa_multiflora	Rmu_sc0004966.1_g000004 Rmu_sc0011502.1_g000006 Rmu_sc0036321.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090280 Rroxscaffold_2G00090290 Rroxscaffold_2G00090310 Rroxscaffold_2G00090320 Rroxscaffold_2G00090340
rosa_rugosa	Rorug02G0477600 Rorug02G0477800 Rorug02G0478000
rosa_samantha	Rh2AG544500 Rh2AG544700 Rh2AG544800 Rh2BG557300 Rh2BG557600 Rh2CG527600 Rh2CG527800 Rh2CG527900 Rh2DG566400 Rh2DG566600 Rh2DG567100 Rh4CG047800
rosa_wichuraiana	Rw2G045030 Rw2G045050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	293
Acc36I	ACCTGC	1 cut(s)	293
AccB1I	GGYRCC	1 cut(s)	299
AccII	CGCG	1 cut(s)	80
AccIII	TCCGGA	1 cut(s)	109
AciI	CCGC	1 cut(s)	434
AcoI	YGGCCR	1 cut(s)	411
AcuI	CTGAAG	1 cut(s)	35
AcyI	GRCGYC	2 cut(s)	27, 300
AfaI	GTAC	3 cut(s)	128, 140, 275
AfiI	CCNNNNNNNGG	3 cut(s)	109, 394, 395
AgsI	TTSAA	2 cut(s)	209, 453
AloI	GAACNNNNNNTCC	2 cut(s)	201, 233
AluBI	AGCT	3 cut(s)	19, 85, 370
AluI	AGCT	3 cut(s)	19, 85, 370
Aor13HI	TCCGGA	1 cut(s)	109
AoxI	GGCC	2 cut(s)	224, 411
ApeKI	GCWGC	4 cut(s)	82, 418, 427, 430
AspLEI	GCGC	2 cut(s)	82, 302
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	3 cut(s)	57, 304, 316
AvaII	GGWCC	1 cut(s)	292
BalI	TGGCCA	1 cut(s)	413
BanI	GGYRCC	1 cut(s)	299
BbvI	GCAGC	4 cut(s)	94, 405, 414, 417
BccI	CCATC	2 cut(s)	64, 112
BceAI	ACGGC	1 cut(s)	421
BfaI	CTAG	1 cut(s)	86
BfoI	RGCGCY	1 cut(s)	303
BfuAI	ACCTGC	1 cut(s)	293
BisI	GCNGC	5 cut(s)	83, 419, 428, 431, 434
BlsI	GCNGC	5 cut(s)	84, 420, 429, 432, 435
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	301
BmsI	GCATC	1 cut(s)	368
BsaHI	GRCGYC	2 cut(s)	27, 300
BsaJI	CCNNGG	2 cut(s)	295, 318
BsaWI	WCCGGW	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 394, 395
Bse1I	ACTGG	2 cut(s)	140, 220
BseAI	TCCGGA	1 cut(s)	109
BseDI	CCNNGG	2 cut(s)	295, 318
BseGI	GGATG	1 cut(s)	123
BseLI	CCNNNNNNNGG	3 cut(s)	109, 394, 395
BseNI	ACTGG	2 cut(s)	140, 220
BseXI	GCAGC	4 cut(s)	94, 405, 414, 417
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	2 cut(s)	226, 413
BshNI	GGYRCC	1 cut(s)	299
BsiSI	CCGG	1 cut(s)	110
BslI	CCNNNNNNNGG	3 cut(s)	109, 394, 395
BsnI	GGCC	2 cut(s)	226, 413
Bsp13I	TCCGGA	1 cut(s)	109
Bsp143I	GATC	1 cut(s)	154
Bsp19I	CCATGG	2 cut(s)	295, 318
BspACI	CCGC	1 cut(s)	434
BspANI	GGCC	2 cut(s)	226, 413
BspEI	TCCGGA	1 cut(s)	109
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	1 cut(s)	301
BspMI	ACCTGC	1 cut(s)	293
BspT107I	GGYRCC	1 cut(s)	299
BsrI	ACTGG	2 cut(s)	140, 220
BssECI	CCNNGG	2 cut(s)	295, 318
BssMI	GATC	1 cut(s)	154
BssNI	GRCGYC	2 cut(s)	27, 300
BssT1I	CCWWGG	2 cut(s)	295, 318
Bst4CI	ACNGT	3 cut(s)	328, 378, 406
BstACI	GRCGYC	2 cut(s)	27, 300
BstDSI	CCRYGG	2 cut(s)	295, 318
BstEII	GGTNACC	1 cut(s)	322
BstF5I	GGATG	1 cut(s)	123
BstFNI	CGCG	1 cut(s)	80
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	2 cut(s)	82, 302
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	4 cut(s)	91, 424, 427, 433
BstNSI	RCATGY	1 cut(s)	256
BstPI	GGTNACC	1 cut(s)	322
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	4 cut(s)	94, 405, 414, 417
BstXI	CCANNNNNNTGG	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	226, 413
BtgI	CCRYGG	2 cut(s)	295, 318
BtgZI	GCGATG	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	227
BveI	ACCTGC	1 cut(s)	293
CfoI	GCGC	2 cut(s)	82, 302
Cfr13I	GGNCC	1 cut(s)	292
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	3 cut(s)	127, 139, 274
CviAII	CATG	4 cut(s)	253, 296, 319, 415
CviQI	GTAC	3 cut(s)	127, 139, 274
DinI	GGCGCC	1 cut(s)	301
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	411
Eco130I	CCWWGG	2 cut(s)	295, 318
Eco47I	GGWCC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	35
Eco91I	GGTNACC	1 cut(s)	322
EcoO65I	GGTNACC	1 cut(s)	322
EcoT14I	CCWWGG	2 cut(s)	295, 318
EgeI	GGCGCC	1 cut(s)	301
EheI	GGCGCC	1 cut(s)	301
ErhI	CCWWGG	2 cut(s)	295, 318
FaeI	CATG	4 cut(s)	256, 299, 322, 418
FaiI	YATR	8 cut(s)	32, 43, 53, 249, 254, 297, 320, 416
FatI	CATG	4 cut(s)	252, 295, 318, 414
Fnu4HI	GCNGC	5 cut(s)	83, 419, 428, 431, 434
FokI	GGATG	1 cut(s)	130
Fsp4HI	GCNGC	5 cut(s)	83, 419, 428, 431, 434
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	2 cut(s)	81, 301
GluI	GCNGC	5 cut(s)	83, 419, 428, 431, 434
HaeII	RGCGCY	1 cut(s)	303
HaeIII	GGCC	2 cut(s)	226, 413
HapII	CCGG	1 cut(s)	110
HgaI	GACGC	1 cut(s)	35
HhaI	GCGC	2 cut(s)	82, 302
Hin1I	GRCGYC	2 cut(s)	27, 300
Hin1II	CATG	4 cut(s)	256, 299, 322, 418
Hin6I	GCGC	2 cut(s)	80, 300
HinP1I	GCGC	2 cut(s)	80, 300
HincII	GTYRAC	3 cut(s)	76, 333, 441
HindII	GTYRAC	3 cut(s)	76, 333, 441
HpaI	GTTAAC	1 cut(s)	333
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	3 cut(s)	57, 304, 316
Hpy166II	GTNNAC	4 cut(s)	76, 333, 402, 441
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	4 cut(s)	76, 333, 402, 441
Hpy99I	CGWCG	1 cut(s)	146
HpyCH4III	ACNGT	3 cut(s)	328, 378, 406
HpyCH4IV	ACGT	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	4 cut(s)	91, 424, 427, 433
HpySE526I	ACGT	1 cut(s)	141
Hsp92I	GRCGYC	2 cut(s)	27, 300
Hsp92II	CATG	4 cut(s)	256, 299, 322, 418
HspAI	GCGC	2 cut(s)	80, 300
KasI	GGCGCC	1 cut(s)	299
Kpn2I	TCCGGA	1 cut(s)	109
KspAI	GTTAAC	1 cut(s)	333
Kzo9I	GATC	1 cut(s)	154
LpnPI	CCDG	6 cut(s)	121, 123, 233, 246, 298, 336
Lsp1109I	GCAGC	4 cut(s)	94, 405, 414, 417
LweI	GCATC	1 cut(s)	368
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	3 cut(s)	63, 322, 372
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MlsI	TGGCCA	1 cut(s)	413
MluNI	TGGCCA	1 cut(s)	413
Mly113I	GGCGCC	1 cut(s)	300
MnlI	CCTC	5 cut(s)	105, 113, 189, 237, 454
Mox20I	TGGCCA	1 cut(s)	413
MroI	TCCGGA	1 cut(s)	109
MscI	TGGCCA	1 cut(s)	413
MseI	TTAA	1 cut(s)	332
MslI	CAYNNNNRTG	2 cut(s)	53, 317
Msp20I	TGGCCA	1 cut(s)	413
MspI	CCGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	4 cut(s)	91, 424, 427, 433
NarI	GGCGCC	1 cut(s)	300
NcoI	CCATGG	2 cut(s)	295, 318
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	4 cut(s)	256, 299, 322, 418
NlaIV	GGNNCC	1 cut(s)	301
NmuCI	GTSAC	2 cut(s)	63, 322
NspI	RCATGY	1 cut(s)	256
PaqCI	CACCTGC	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PkrI	GCNGC	5 cut(s)	84, 420, 429, 432, 435
PluTI	GGCGCC	1 cut(s)	303
PspEI	GGTNACC	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	301
PspPI	GGNCC	1 cut(s)	292
RsaI	GTAC	3 cut(s)	128, 140, 275
RsaNI	GTAC	3 cut(s)	127, 139, 274
RseI	CAYNNNNRTG	2 cut(s)	53, 317
SaqAI	TTAA	1 cut(s)	332
SatI	GCNGC	5 cut(s)	83, 419, 428, 431, 434
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	1 cut(s)	292
SetI	ASST	7 cut(s)	21, 38, 87, 144, 287, 372, 446
SfaNI	GCATC	1 cut(s)	368
SfoI	GGCGCC	1 cut(s)	301
SinI	GGWCC	1 cut(s)	292
SmiMI	CAYNNNNRTG	2 cut(s)	53, 317
SsiI	CCGC	1 cut(s)	434
SspDI	GGCGCC	1 cut(s)	299
SspMI	CTAG	1 cut(s)	86
StyI	CCWWGG	2 cut(s)	295, 318
TaaI	ACNGT	3 cut(s)	328, 378, 406
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	2 cut(s)	153, 362
TatI	WGTACW	1 cut(s)	126
TauI	GCSGC	1 cut(s)	436
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TscAI	CASTG	1 cut(s)	227
TseFI	GTSAC	2 cut(s)	63, 322
TseI	GCWGC	4 cut(s)	82, 418, 427, 430
Tsp45I	GTSAC	2 cut(s)	63, 322
TspDTI	ATGAA	2 cut(s)	37, 175
TspRI	CASTG	1 cut(s)	227
VpaK11BI	GGWCC	1 cut(s)	292
XceI	RCATGY	1 cut(s)	256
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.