Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001495

Physical Location & Seq

Genomic Coordinates Reverse (-)

8077033 .. 8078737

Gene Structure 1705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1095200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGGTGCTTTGTTGAAGCTTGTAGATGCCACACTCATCGTCTTCTTCATCGTAATTGCGGTGGCAGCGCCCTTGCTCGACTCGCAGATAATTCTGCCTCGGTGCCTCTTCCCAGACTGGCTGGTTGAACTCCAGAGCTGGTTATACGTGCGCATCTTAGGCCATTATCTTGTGACCGAGAAACATCATTTCTTTGTTGGCCTCGTTTGGCTGCAGCTACTCCTTCAGTGGCCTCTTGCGCTGGCCAACTTGTATGGAATTTTGGCCGCCAAGTCTTGGTTCAACACCACCTGCTTGATCTATGGAGTTTCTTTCTTCGGCTCCATCATTACTGAATTATCGGAGCTGGTTCAGTCCGGCAAGGCTTCTGATATGCTGATATATTTTTACTTCCCTTTTCTGGGGTTAGCTGTTTTGGCCATACTGCGGGGGCTTCTGCCACCATCCTGCAAGACCACTTCAAGCATCGGCAAGAGACCTACGTTGGGTAGGAAAAAGAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2781

Protein Analysis

169

Amino Acids

18.8

Weight (kDa)

9.38

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EBP	PF05241	53 - 140	7.4e-06	EXPERA (EXPanded EBP superfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05210 AT2G32380
fragaria_vesca	FvH4_6g43330 FvH4_6g43370 FvH4_6g43380 FvH4_7g06210
malus_domestica	MD09G1107600.v1.1 MD17G1095200.v1.1 MD17G1095300.v1.1 MD17G1095500.v1.1 MD17G1095800.v1.1
prunus_persica	Prupe.3G218100_v2.0.a1 Prupe.3G218400_v2.0.a1 Prupe.3G218400_v2.0.a1
pyrus_communis	pycom09g02970 pycom17g09170 pycom17g09180 pycom17g09200 pycom17g09210
rosa_chinensis	RchiOBHm_Chr2g0159661 RchiOBHm_Chr2g0159681 RchiOBHm_Chr2g0159721
rosa_laevigata	RLG00000021171 RLG00000021173 RLG00000021174 RLG00000021176
rosa_multiflora	Rmu_sc0004966.1_g000004 Rmu_sc0011502.1_g000006 Rmu_sc0036321.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090280 Rroxscaffold_2G00090290 Rroxscaffold_2G00090310 Rroxscaffold_2G00090320 Rroxscaffold_2G00090340
rosa_rugosa	Rorug02G0477600 Rorug02G0477800 Rorug02G0478000
rosa_samantha	Rh2AG544500 Rh2AG544700 Rh2AG544800 Rh2BG557300 Rh2BG557600 Rh2CG527600 Rh2CG527800 Rh2CG527900 Rh2DG566400 Rh2DG566600 Rh2DG567100 Rh4CG047800
rosa_wichuraiana	Rw2G045030 Rw2G045050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	299
Acc16I	TGCGCA	1 cut(s)	152
Acc36I	ACCTGC	1 cut(s)	299
AccB1I	GGYRCC	1 cut(s)	102
AccB7I	CCANNNNNTGG	1 cut(s)	276
AciI	CCGC	3 cut(s)	59, 267, 427
AcoI	YGGCCR	3 cut(s)	243, 264, 417
AcsI	RAATTY	1 cut(s)	258
AcuI	CTGAAG	1 cut(s)	209
AfiI	CCNNNNNNNGG	5 cut(s)	276, 400, 401, 426, 485
AgsI	TTSAA	4 cut(s)	16, 128, 283, 462
AjuI	GAANNNNNNNTTGG	2 cut(s)	263, 295
AluBI	AGCT	5 cut(s)	19, 138, 217, 346, 410
AluI	AGCT	5 cut(s)	19, 138, 217, 346, 410
Alw26I	GTCTC	1 cut(s)	469
AoxI	GGCC	6 cut(s)	160, 199, 230, 243, 264, 417
ApeKI	GCWGC	3 cut(s)	65, 211, 214
ApoI	RAATTY	1 cut(s)	258
AspLEI	GCGC	3 cut(s)	70, 153, 241
BalI	TGGCCA	2 cut(s)	245, 419
BanI	GGYRCC	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	34
BbvI	GCAGC	3 cut(s)	77, 198, 226
BccI	CCATC	2 cut(s)	332, 451
BcoDI	GTCTC	1 cut(s)	469
BfmI	CTRYAG	1 cut(s)	212
BfoI	RGCGCY	1 cut(s)	71
BfuAI	ACCTGC	1 cut(s)	299
BisI	GCNGC	4 cut(s)	66, 212, 215, 267
BlsI	GCNGC	4 cut(s)	67, 213, 216, 268
BmiI	GGNNCC	2 cut(s)	104, 322
BmsI	GCATC	3 cut(s)	16, 162, 474
BpiI	GAAGAC	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	116
BsaAI	YACGTR	1 cut(s)	148
BsaI	GGTCTC	1 cut(s)	469
BsaJI	CCNNGG	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	5 cut(s)	276, 400, 401, 426, 485
Bse1I	ACTGG	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	98
BseGI	GGATG	1 cut(s)	443
BseLI	CCNNNNNNNGG	5 cut(s)	276, 400, 401, 426, 485
BseNI	ACTGG	1 cut(s)	122
BseXI	GCAGC	3 cut(s)	77, 198, 226
BshFI	GGCC	6 cut(s)	162, 201, 232, 245, 266, 419
BshNI	GGYRCC	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	357
BslI	CCNNNNNNNGG	5 cut(s)	276, 400, 401, 426, 485
BsmAI	GTCTC	1 cut(s)	469
BsnI	GGCC	6 cut(s)	162, 201, 232, 245, 266, 419
Bso31I	GGTCTC	1 cut(s)	469
Bsp143I	GATC	1 cut(s)	297
BspACI	CCGC	3 cut(s)	59, 267, 427
BspANI	GGCC	6 cut(s)	162, 201, 232, 245, 266, 419
BspLI	GGNNCC	2 cut(s)	104, 322
BspMAI	CTGCAG	1 cut(s)	216
BspMI	ACCTGC	1 cut(s)	299
BspT107I	GGYRCC	1 cut(s)	102
BspTNI	GGTCTC	1 cut(s)	469
BsrI	ACTGG	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	98
BssMI	GATC	1 cut(s)	297
Bst6I	CTCTTC	1 cut(s)	113
BstBAI	YACGTR	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	443
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	3 cut(s)	70, 153, 241
BstKTI	GATC	1 cut(s)	300
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	1 cut(s)	297
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 82, 159, 238, 416
BstSFI	CTRYAG	1 cut(s)	212
BstV1I	GCAGC	3 cut(s)	77, 198, 226
BstV2I	GAAGAC	1 cut(s)	34
BsuRI	GGCC	6 cut(s)	162, 201, 232, 245, 266, 419
BtsCI	GGATG	1 cut(s)	443
BtsIMutI	CAGTG	1 cut(s)	233
BveI	ACCTGC	1 cut(s)	299
Cac8I	GCNNGC	1 cut(s)	243
CfoI	GCGC	3 cut(s)	70, 153, 241
DdeI	CTNAG	1 cut(s)	157
DpnI	GATC	1 cut(s)	299
DpnII	GATC	1 cut(s)	297
EaeI	YGGCCR	3 cut(s)	243, 264, 417
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco31I	GGTCTC	1 cut(s)	469
Eco57I	CTGAAG	1 cut(s)	209
FaiI	YATR	6 cut(s)	145, 255, 303, 374, 382, 422
FauI	CCCGC	1 cut(s)	420
Fnu4HI	GCNGC	4 cut(s)	66, 212, 215, 267
FokI	GGATG	1 cut(s)	430
Fsp4HI	GCNGC	4 cut(s)	66, 212, 215, 267
FspAI	RTGCGCAY	1 cut(s)	152
FspI	TGCGCA	1 cut(s)	152
GlaI	GCGC	3 cut(s)	69, 152, 240
GluI	GCNGC	4 cut(s)	66, 212, 215, 267
GsuI	CTGGAG	1 cut(s)	116
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	6 cut(s)	162, 201, 232, 245, 266, 419
HapII	CCGG	1 cut(s)	357
HhaI	GCGC	3 cut(s)	70, 153, 241
Hin6I	GCGC	3 cut(s)	68, 151, 239
HinP1I	GCGC	3 cut(s)	68, 151, 239
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	1 cut(s)	80
HpaII	CCGG	1 cut(s)	357
Hpy188I	TCNGA	2 cut(s)	343, 370
Hpy188III	TCNNGA	1 cut(s)	133
HpyAV	CCTTC	2 cut(s)	233, 493
HpyCH4IV	ACGT	2 cut(s)	147, 482
HpyCH4V	TGCA	2 cut(s)	214, 450
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 82, 159, 238, 416
HpyF3I	CTNAG	1 cut(s)	157
HpySE526I	ACGT	2 cut(s)	147, 482
HspAI	GCGC	3 cut(s)	68, 151, 239
Kzo9I	GATC	1 cut(s)	297
LmnI	GCTCC	2 cut(s)	326, 343
Lsp1109I	GCAGC	3 cut(s)	77, 198, 226
LweI	GCATC	3 cut(s)	16, 162, 474
MaeII	ACGT	2 cut(s)	147, 482
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	1 cut(s)	299
MboI	GATC	1 cut(s)	297
MboII	GAAGA	4 cut(s)	34, 37, 100, 307
MlsI	TGGCCA	2 cut(s)	245, 419
MluCI	AATT	4 cut(s)	54, 90, 258, 335
MluNI	TGGCCA	2 cut(s)	245, 419
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	4 cut(s)	108, 116, 212, 243
Mox20I	TGGCCA	2 cut(s)	245, 419
MscI	TGGCCA	2 cut(s)	245, 419
Msp20I	TGGCCA	2 cut(s)	245, 419
MspI	CCGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	5 cut(s)	65, 82, 159, 238, 416
NdeII	GATC	1 cut(s)	297
NlaIV	GGNNCC	2 cut(s)	104, 322
NmuCI	GTSAC	1 cut(s)	172
NsbI	TGCGCA	1 cut(s)	152
PaqCI	CACCTGC	1 cut(s)	299
PflMI	CCANNNNNTGG	1 cut(s)	276
PkrI	GCNGC	4 cut(s)	67, 213, 216, 268
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
Ppu21I	YACGTR	1 cut(s)	148
PspN4I	GGNNCC	2 cut(s)	104, 322
PstI	CTGCAG	1 cut(s)	216
SatI	GCNGC	4 cut(s)	66, 212, 215, 267
Sau3AI	GATC	1 cut(s)	297
SchI	GAGTC	1 cut(s)	74
SetI	ASST	9 cut(s)	21, 140, 150, 219, 293, 348, 412, 481, 485
SfaNI	GCATC	3 cut(s)	16, 162, 474
SfcI	CTRYAG	1 cut(s)	212
Sse9I	AATT	4 cut(s)	54, 90, 258, 335
SsiI	CCGC	3 cut(s)	59, 267, 427
TaiI	ACGT	2 cut(s)	150, 485
TaqI	TCGA	1 cut(s)	78
TaqII	GACCGA	1 cut(s)	191
TasI	AATT	4 cut(s)	54, 90, 258, 335
TauI	GCSGC	1 cut(s)	269
TscAI	CASTG	1 cut(s)	233
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	3 cut(s)	65, 211, 214
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	37
TspRI	CASTG	1 cut(s)	233
Van91I	CCANNNNNTGG	1 cut(s)	276
XapI	RAATTY	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.