Rh4CG047800

Transmembrane protein 97-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001495
Physical Location & Seq
Forward (+)
9583080 .. 9583403
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG047800.1

Sequence Viewer

Length: 324 bp
ATGGGTGCTCTGTTAAAGCTTGTGGACGCCGTCCTCTTCGTCTTCTTCGTCGTAATCGCGGTGGCGGCGCCGTTAATCGACGCGCAGACGTGTCTGCCTGAGAGCCTCTTCCCGAGCGTCTTAGTTGAGCTCAAGAACTGGTACGCGCGTGAGTACGGCGACTATCTCATGACCCAGAAGCCTCATTTCATCGTTGGGATCGTCTGGCTTGAGCTGCTGTTTCAGTGGCCTCTTGCTCTTGCCAACCTGTACGGAATTTTGGCCTCCAAGTCTTGGTTTAGCACCACCTGCTTGATCTTTGGCAGCAACCGGATAAATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2781

Protein Analysis

107

Amino Acids

12.1

Weight (kDa)

5.62

Isoelectric Point (pI)

14.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EBP PF05241 41 - 102 3.3e-09 EXPERA (EXPanded EBP superfamily)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 296
Acc36I ACCTGC 1 cut(s) 296
AccB1I GGYRCC 1 cut(s) 67
AccB7I CCANNNNNTGG 1 cut(s) 273
AccII CGCG 4 cut(s) 59, 83, 146, 148
AciI CCGC 2 cut(s) 59, 65
AclWI GGATC 1 cut(s) 206
AcsI RAATTY 2 cut(s) 255, 316
AcyI GRCGYC 2 cut(s) 27, 68
AfaI GTAC 3 cut(s) 143, 155, 251
AfiI CCNNNNNNNGG 1 cut(s) 273
AflIII ACRYGT 1 cut(s) 89
AjiI CACGTC 1 cut(s) 90
AluBI AGCT 3 cut(s) 19, 130, 214
AluI AGCT 3 cut(s) 19, 130, 214
Alw21I GWGCWC 2 cut(s) 10, 132
AlwI GGATC 1 cut(s) 206
Ama87I CYCGRG 1 cut(s) 112
AoxI GGCC 2 cut(s) 227, 261
ApeKI GCWGC 2 cut(s) 214, 303
ApoI RAATTY 2 cut(s) 255, 316
AspLEI GCGC 3 cut(s) 70, 85, 148
AvaI CYCGRG 1 cut(s) 112
BaeI ACNNNNGTAYC 2 cut(s) 133, 166
BanI GGYRCC 1 cut(s) 67
BanII GRGCYC 1 cut(s) 132
BbsI GAAGAC 1 cut(s) 34
Bbv12I GWGCWC 2 cut(s) 10, 132
BbvI GCAGC 2 cut(s) 201, 315
BceAI ACGGC 3 cut(s) 14, 55, 172
BfoI RGCGCY 1 cut(s) 71
BfuAI ACCTGC 1 cut(s) 296
BisI GCNGC 3 cut(s) 66, 215, 304
BlsI GCNGC 3 cut(s) 67, 216, 305
BmeT110I CYCGRG 1 cut(s) 112
BmgBI CACGTC 1 cut(s) 90
BmiI GGNNCC 1 cut(s) 69
BpiI GAAGAC 1 cut(s) 34
BpuEI CTTGAG 2 cut(s) 116, 230
BsaHI GRCGYC 2 cut(s) 27, 68
BsaWI WCCGGW 1 cut(s) 309
Bsc4I CCNNNNNNNGG 1 cut(s) 273
Bse1I ACTGG 1 cut(s) 143
BseLI CCNNNNNNNGG 1 cut(s) 273
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 143
BseXI GCAGC 2 cut(s) 201, 315
Bsh1236I CGCG 4 cut(s) 59, 83, 146, 148
BshFI GGCC 2 cut(s) 229, 263
BshNI GGYRCC 1 cut(s) 67
BsiHKAI GWGCWC 2 cut(s) 10, 132
BsiHKCI CYCGRG 1 cut(s) 112
BsiSI CCGG 1 cut(s) 310
BslI CCNNNNNNNGG 1 cut(s) 273
BsnI GGCC 2 cut(s) 229, 263
BsoBI CYCGRG 1 cut(s) 112
Bsp1286I GDGCHC 2 cut(s) 10, 132
Bsp143I GATC 2 cut(s) 198, 294
BspACI CCGC 2 cut(s) 59, 65
BspANI GGCC 2 cut(s) 229, 263
BspCNI CTCAG 1 cut(s) 91
BspFNI CGCG 4 cut(s) 59, 83, 146, 148
BspHI TCATGA 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 69
BspMI ACCTGC 1 cut(s) 296
BspPI GGATC 1 cut(s) 206
BspT107I GGYRCC 1 cut(s) 67
BsrI ACTGG 1 cut(s) 143
BssMI GATC 2 cut(s) 198, 294
BssNI GRCGYC 2 cut(s) 27, 68
Bst6I CTCTTC 2 cut(s) 41, 113
BstACI GRCGYC 2 cut(s) 27, 68
BstAPI GCANNNNNTGC 1 cut(s) 288
BstDEI CTNAG 2 cut(s) 99, 121
BstFNI CGCG 4 cut(s) 59, 83, 146, 148
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 3 cut(s) 70, 85, 148
BstKTI GATC 2 cut(s) 201, 297
BstMBI GATC 2 cut(s) 198, 294
BstMWI GCNNNNNNNGC 3 cut(s) 65, 214, 288
BstUI CGCG 4 cut(s) 59, 83, 146, 148
BstV1I GCAGC 2 cut(s) 201, 315
BstV2I GAAGAC 1 cut(s) 34
BsuRI GGCC 2 cut(s) 229, 263
BtrI CACGTC 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 230
BveI ACCTGC 1 cut(s) 296
CciI TCATGA 1 cut(s) 168
CfoI GCGC 3 cut(s) 70, 85, 148
CseI GACGC 3 cut(s) 35, 89, 106
Csp6I GTAC 3 cut(s) 142, 154, 250
CviAII CATG 1 cut(s) 169
CviJI RGCY 8 cut(s) 19, 105, 130, 181, 208, 214, 229, 263
CviKI_1 RGCY 8 cut(s) 19, 105, 130, 181, 208, 214, 229, 263
CviQI GTAC 3 cut(s) 142, 154, 250
DdeI CTNAG 2 cut(s) 99, 121
DinI GGCGCC 1 cut(s) 69
DpnI GATC 2 cut(s) 200, 296
DpnII GATC 2 cut(s) 198, 294
Eam1104I CTCTTC 2 cut(s) 41, 113
EarI CTCTTC 2 cut(s) 41, 113
Ecl136II GAGCTC 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 132
Eco53kI GAGCTC 1 cut(s) 130
Eco88I CYCGRG 1 cut(s) 112
EcoICRI GAGCTC 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 132
EgeI GGCGCC 1 cut(s) 69
EheI GGCGCC 1 cut(s) 69
FaeI CATG 1 cut(s) 172
FaiI YATR 1 cut(s) 170
FatI CATG 1 cut(s) 168
Fnu4HI GCNGC 3 cut(s) 66, 215, 304
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 3 cut(s) 66, 215, 304
GlaI GCGC 3 cut(s) 69, 84, 147
GluI GCNGC 3 cut(s) 66, 215, 304
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 2 cut(s) 229, 263
HapII CCGG 1 cut(s) 310
HgaI GACGC 3 cut(s) 35, 89, 106
HhaI GCGC 3 cut(s) 70, 85, 148
Hin1I GRCGYC 2 cut(s) 27, 68
Hin1II CATG 1 cut(s) 172
Hin6I GCGC 3 cut(s) 68, 83, 146
HinP1I GCGC 3 cut(s) 68, 83, 146
HindIII AAGCTT 1 cut(s) 17
HpaII CCGG 1 cut(s) 310
Hpy166II GTNNAC 1 cut(s) 25
Hpy188III TCNNGA 3 cut(s) 112, 133, 169
Hpy8I GTNNAC 1 cut(s) 25
Hpy99I CGWCG 2 cut(s) 53, 83
HpyCH4IV ACGT 1 cut(s) 89
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 214, 288
HpyF3I CTNAG 2 cut(s) 99, 121
HpySE526I ACGT 1 cut(s) 89
Hsp92I GRCGYC 2 cut(s) 27, 68
Hsp92II CATG 1 cut(s) 172
HspAI GCGC 3 cut(s) 68, 83, 146
KasI GGCGCC 1 cut(s) 67
Kzo9I GATC 2 cut(s) 198, 294
LpnPI CCDG 6 cut(s) 111, 124, 188, 190, 260, 301
Lsp1109I GCAGC 2 cut(s) 201, 315
MaeII ACGT 1 cut(s) 89
MalI GATC 2 cut(s) 200, 296
MboI GATC 2 cut(s) 198, 294
MboII GAAGA 4 cut(s) 28, 34, 37, 100
MhlI GDGCHC 2 cut(s) 10, 132
MluCI AATT 2 cut(s) 255, 316
Mly113I GGCGCC 1 cut(s) 68
MnlI CCTC 5 cut(s) 44, 116, 192, 240, 274
MseI TTAA 2 cut(s) 14, 74
MspI CCGG 1 cut(s) 310
MvnI CGCG 4 cut(s) 59, 83, 146, 148
MwoI GCNNNNNNNGC 3 cut(s) 65, 214, 288
NarI GGCGCC 1 cut(s) 68
NdeII GATC 2 cut(s) 198, 294
NlaIII CATG 1 cut(s) 172
NlaIV GGNNCC 1 cut(s) 69
PagI TCATGA 1 cut(s) 168
PaqCI CACCTGC 1 cut(s) 296
PcsI WCGNNNNNNNCGW 2 cut(s) 45, 198
PflFI GACNNNGTC 1 cut(s) 29
PflMI CCANNNNNTGG 1 cut(s) 273
PkrI GCNGC 3 cut(s) 67, 216, 305
PluTI GGCGCC 1 cut(s) 71
Psp124BI GAGCTC 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 69
PsyI GACNNNGTC 1 cut(s) 29
RsaI GTAC 3 cut(s) 143, 155, 251
RsaNI GTAC 3 cut(s) 142, 154, 250
SacI GAGCTC 1 cut(s) 132
SaqAI TTAA 2 cut(s) 14, 74
SatI GCNGC 3 cut(s) 66, 215, 304
Sau3AI GATC 2 cut(s) 198, 294
SduI GDGCHC 2 cut(s) 10, 132
SetI ASST 6 cut(s) 21, 92, 132, 216, 249, 290
SfoI GGCGCC 1 cut(s) 69
SmlI CTYRAG 2 cut(s) 131, 209
SmoI CTYRAG 2 cut(s) 131, 209
Sse9I AATT 2 cut(s) 255, 316
SsiI CCGC 2 cut(s) 59, 65
SspDI GGCGCC 1 cut(s) 67
SstI GAGCTC 1 cut(s) 132
TaiI ACGT 1 cut(s) 92
TaqI TCGA 1 cut(s) 78
TasI AATT 2 cut(s) 255, 316
TauI GCSGC 1 cut(s) 68
Tru1I TTAA 2 cut(s) 14, 74
Tru9I TTAA 2 cut(s) 14, 74
TscAI CASTG 1 cut(s) 230
TseI GCWGC 2 cut(s) 214, 303
TspDTI ATGAA 1 cut(s) 178
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 1 cut(s) 230
Tth111I GACNNNGTC 1 cut(s) 29
Van91I CCANNNNNTGG 1 cut(s) 273
XapI RAATTY 2 cut(s) 255, 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.