Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001495

Physical Location & Seq

Genomic Coordinates Forward (+)

77303756 .. 77311958

Gene Structure 8203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG544700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCAGTTTCGCCTATGGTGCACGCGCAGTTTGTTCTGCCTCTGAGCTTCTTCCCGGAGTGGATGGTGGAGCAGAAGAACTGGTACATGCGCGAGTTCGATGACTACTTCTATGTCGAGAAGCCTGATTTCTTTATTGGTCTGGTTTTGGTTGAGCTTGTGTTCCAGTGGCCTCTCGCCCTTGCCATCTTGTACGGGATGTTGGCTTCCAAGAATTGGTACGGTACCACTTGCTTGGTGACTGCATTAGCGGGACTCATTGGATCAGACAAGGCATCTGGTAAGGTCTTAACATTGTACTACACTTTTTTGGGGTGCGCTGTCCTGACCATACTTCGTGGGTTGATGCCACCATCAACTACTTCAAACAATGACAAAGCAAGAACAAAAAGGATTGGCGCGCGTTCCGAAGAAAATGATCTAAGTCCAGACCGCCTCTCTCAGCCACCACCTACGGCAAACGGCCAGACGCTATCCCAGTATCCCGTAGATGCGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2781

Protein Analysis

166

Amino Acids

18.65

Weight (kDa)

5.79

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EBP	PF05241	22 - 84	6.2e-07	EXPERA (EXPanded EBP superfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05210 AT2G32380
fragaria_vesca	FvH4_6g43330 FvH4_6g43370 FvH4_6g43380 FvH4_7g06210
malus_domestica	MD09G1107600.v1.1 MD17G1095200.v1.1 MD17G1095300.v1.1 MD17G1095500.v1.1 MD17G1095800.v1.1
prunus_persica	Prupe.3G218100_v2.0.a1 Prupe.3G218400_v2.0.a1 Prupe.3G218400_v2.0.a1
pyrus_communis	pycom09g02970 pycom17g09170 pycom17g09180 pycom17g09200 pycom17g09210
rosa_chinensis	RchiOBHm_Chr2g0159661 RchiOBHm_Chr2g0159681 RchiOBHm_Chr2g0159721
rosa_laevigata	RLG00000021171 RLG00000021173 RLG00000021174 RLG00000021176
rosa_multiflora	Rmu_sc0004966.1_g000004 Rmu_sc0011502.1_g000006 Rmu_sc0036321.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090280 Rroxscaffold_2G00090290 Rroxscaffold_2G00090310 Rroxscaffold_2G00090320 Rroxscaffold_2G00090340
rosa_rugosa	Rorug02G0477600 Rorug02G0477800 Rorug02G0478000
rosa_samantha	Rh2AG544500 Rh2AG544700 Rh2AG544800 Rh2BG557300 Rh2BG557600 Rh2CG527600 Rh2CG527800 Rh2CG527900 Rh2DG566400 Rh2DG566600 Rh2DG567100 Rh4CG047800
rosa_wichuraiana	Rw2G045030 Rw2G045050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	224
AccB7I	CCANNNNNTGG	1 cut(s)	216
AccII	CGCG	4 cut(s)	26, 93, 401, 403
AciI	CCGC	2 cut(s)	251, 433
AclWI	GGATC	1 cut(s)	271
AcoI	YGGCCR	1 cut(s)	463
AfaI	GTAC	5 cut(s)	86, 194, 221, 226, 299
AfiI	CCNNNNNNNGG	1 cut(s)	216
AgsI	TTSAA	1 cut(s)	366
AluBI	AGCT	2 cut(s)	48, 157
AluI	AGCT	2 cut(s)	48, 157
Alw21I	GWGCWC	1 cut(s)	24
Alw44I	GTGCAC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	271
AoxI	GGCC	2 cut(s)	170, 463
ApaLI	GTGCAC	1 cut(s)	20
Asp718I	GGTACC	1 cut(s)	224
AspLEI	GCGC	5 cut(s)	28, 93, 320, 401, 403
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	250
BaeGI	GKGCMC	1 cut(s)	24
BanI	GGYRCC	1 cut(s)	224
BarI	GAAGNNNNNNTAC	2 cut(s)	68, 100
Bbv12I	GWGCWC	1 cut(s)	24
BccI	CCATC	3 cut(s)	58, 194, 361
BceAI	ACGGC	2 cut(s)	471, 478
BciVI	GTATCC	1 cut(s)	492
BcnI	CCSGG	1 cut(s)	56
BfuI	GTATCC	1 cut(s)	492
Bme1390I	CCNGG	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	1 cut(s)	56
BmrI	ACTGGG	1 cut(s)	472
BmsI	GCATC	3 cut(s)	284, 336, 481
BmuI	ACTGGG	1 cut(s)	472
BpuMI	CCSGG	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse1I	ACTGG	3 cut(s)	86, 166, 478
BseGI	GGATG	2 cut(s)	69, 204
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseMII	CTCAG	2 cut(s)	35, 455
BseNI	ACTGG	3 cut(s)	86, 166, 478
BsePI	GCGCGC	1 cut(s)	399
BseSI	GKGCMC	1 cut(s)	24
Bsh1236I	CGCG	4 cut(s)	26, 93, 401, 403
BshFI	GGCC	2 cut(s)	172, 465
BshNI	GGYRCC	1 cut(s)	224
BsiHKAI	GWGCWC	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmFI	GGGAC	1 cut(s)	267
BsnI	GGCC	2 cut(s)	172, 465
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	263, 418
BspACI	CCGC	2 cut(s)	251, 433
BspANI	GGCC	2 cut(s)	172, 465
BspCNI	CTCAG	2 cut(s)	36, 454
BspFNI	CGCG	4 cut(s)	26, 93, 401, 403
BspLI	GGNNCC	1 cut(s)	226
BspPI	GGATC	1 cut(s)	271
BspT107I	GGYRCC	1 cut(s)	224
BsrI	ACTGG	3 cut(s)	86, 166, 478
BssHII	GCGCGC	1 cut(s)	399
BssMI	GATC	2 cut(s)	263, 418
Bst4CI	ACNGT	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	24, 401
BstDEI	CTNAG	3 cut(s)	44, 422, 441
BstF5I	GGATG	2 cut(s)	69, 204
BstFNI	CGCG	4 cut(s)	26, 93, 401, 403
BstHHI	GCGC	5 cut(s)	28, 93, 320, 401, 403
BstKTI	GATC	2 cut(s)	266, 421
BstMBI	GATC	2 cut(s)	263, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstNSI	RCATGY	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	54
BstSLI	GKGCMC	1 cut(s)	24
BstUI	CGCG	4 cut(s)	26, 93, 401, 403
BstXI	CCANNNNNNTGG	1 cut(s)	235
BsuI	GTATCC	1 cut(s)	492
BsuRI	GGCC	2 cut(s)	172, 465
BtsCI	GGATG	2 cut(s)	69, 204
BtsIMutI	CAGTG	1 cut(s)	173
Cac8I	GCNNGC	2 cut(s)	24, 401
CfoI	GCGC	5 cut(s)	28, 93, 320, 401, 403
CseI	GACGC	1 cut(s)	478
Csp6I	GTAC	5 cut(s)	85, 193, 220, 225, 298
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	7 cut(s)	48, 124, 157, 172, 206, 445, 465
CviKI_1	RGCY	7 cut(s)	48, 124, 157, 172, 206, 445, 465
CviQI	GTAC	5 cut(s)	85, 193, 220, 225, 298
DdeI	CTNAG	3 cut(s)	44, 422, 441
DpnI	GATC	2 cut(s)	265, 420
DpnII	GATC	2 cut(s)	263, 418
EaeI	YGGCCR	1 cut(s)	463
FaeI	CATG	1 cut(s)	91
FaiI	YATR	4 cut(s)	17, 89, 114, 332
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	1 cut(s)	87
FauI	CCCGC	1 cut(s)	244
FokI	GGATG	2 cut(s)	76, 211
GlaI	GCGC	5 cut(s)	27, 92, 319, 400, 402
HaeIII	GGCC	2 cut(s)	172, 465
HapII	CCGG	1 cut(s)	56
HgaI	GACGC	1 cut(s)	478
HhaI	GCGC	5 cut(s)	28, 93, 320, 401, 403
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	5 cut(s)	26, 91, 318, 399, 401
HinP1I	GCGC	5 cut(s)	26, 91, 318, 399, 401
HinfI	GANTC	1 cut(s)	255
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	3 cut(s)	45, 268, 409
Hpy188III	TCNNGA	3 cut(s)	118, 325, 428
Hpy8I	GTNNAC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4V	TGCA	2 cut(s)	22, 245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HpyF3I	CTNAG	3 cut(s)	44, 422, 441
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	5 cut(s)	26, 91, 318, 399, 401
KpnI	GGTACC	1 cut(s)	228
Kzo9I	GATC	2 cut(s)	263, 418
LmnI	GCTCC	1 cut(s)	70
LweI	GCATC	3 cut(s)	284, 336, 481
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	2 cut(s)	265, 420
MboI	GATC	2 cut(s)	263, 418
MboII	GAAGA	3 cut(s)	43, 88, 422
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	1 cut(s)	214
MlyI	GAGTC	1 cut(s)	249
MnlI	CCTC	4 cut(s)	51, 183, 446, 489
MseI	TTAA	1 cut(s)	290
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	56
MvnI	CGCG	4 cut(s)	26, 93, 401, 403
MwoI	GCNNNNNNNGC	1 cut(s)	19
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	2 cut(s)	263, 418
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	226
NmuCI	GTSAC	1 cut(s)	238
NspI	RCATGY	1 cut(s)	91
PauI	GCGCGC	1 cut(s)	399
PflMI	CCANNNNNTGG	1 cut(s)	216
PfoI	TCCNGGA	1 cut(s)	54
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	226
PteI	GCGCGC	1 cut(s)	399
RsaI	GTAC	5 cut(s)	86, 194, 221, 226, 299
RsaNI	GTAC	5 cut(s)	85, 193, 220, 225, 298
SaqAI	TTAA	1 cut(s)	290
Sau3AI	GATC	2 cut(s)	263, 418
SchI	GAGTC	1 cut(s)	249
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	5 cut(s)	50, 159, 288, 454, 500
SfaNI	GCATC	3 cut(s)	284, 336, 481
Sse9I	AATT	1 cut(s)	214
SsiI	CCGC	2 cut(s)	251, 433
StyD4I	CCNGG	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	224
TaqI	TCGA	2 cut(s)	99, 117
TasI	AATT	1 cut(s)	214
TatI	WGTACW	1 cut(s)	297
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TscAI	CASTG	1 cut(s)	173
TseFI	GTSAC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	238
TspRI	CASTG	1 cut(s)	173
Van91I	CCANNNNNTGG	1 cut(s)	216
VneI	GTGCAC	1 cut(s)	20
XceI	RCATGY	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.