Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001495

Physical Location & Seq

Genomic Coordinates Reverse (-)

8097308 .. 8098273

Gene Structure 966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1095800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGGTGTTCTTGTCAAGCTCATTGATGCGTTACTCTTCCTCTTGCTCCTGGCGATCGCTTTCAAAACACCGTTGATTGAAGCGCAAGCATGCCTCCCTCGCAACCTCTACCCAGACATTCTCGTGGACCTCAGGAACTGGTACACTCGCGAGTCCGGCGACTATCTCATGACCGAAATGCCTGATTTCTACGTCGGGATCATGTGGATTGAGCTTGTTTTTCAGTGGCCTCTCGTGTTTGTTAACCTTTATGGCATCTTGGCTAGCATGCCTTGGTTCAACATTACGTGCTTAAGCTACGGAATATCTCTTTTCACTTCCATGGTGCCAATATTTGCAGAATTGACATGGTCAGGAAGGGCACCTGATAAGCTACTGACGGTGTACTACTGTTTCTTGAGTTTGGGTGTTTTAGCCATACTGCGTGGGCTGCTACCCAACTCATCAACCAATCATACTGCAACCATTGGCAAAAGACCTGCTTCAGGTAGGAAGAAGAAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2781

Protein Analysis

169

Amino Acids

19.02

Weight (kDa)

8.79

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EBP	PF05241	41 - 118	4e-12	EXPERA (EXPanded EBP superfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05210 AT2G32380
fragaria_vesca	FvH4_6g43330 FvH4_6g43370 FvH4_6g43380 FvH4_7g06210
malus_domestica	MD09G1107600.v1.1 MD17G1095200.v1.1 MD17G1095300.v1.1 MD17G1095500.v1.1 MD17G1095800.v1.1
prunus_persica	Prupe.3G218100_v2.0.a1 Prupe.3G218400_v2.0.a1 Prupe.3G218400_v2.0.a1
pyrus_communis	pycom09g02970 pycom17g09170 pycom17g09180 pycom17g09200 pycom17g09210
rosa_chinensis	RchiOBHm_Chr2g0159661 RchiOBHm_Chr2g0159681 RchiOBHm_Chr2g0159721
rosa_laevigata	RLG00000021171 RLG00000021173 RLG00000021174 RLG00000021176
rosa_multiflora	Rmu_sc0004966.1_g000004 Rmu_sc0011502.1_g000006 Rmu_sc0036321.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090280 Rroxscaffold_2G00090290 Rroxscaffold_2G00090310 Rroxscaffold_2G00090320 Rroxscaffold_2G00090340
rosa_rugosa	Rorug02G0477600 Rorug02G0477800 Rorug02G0478000
rosa_samantha	Rh2AG544500 Rh2AG544700 Rh2AG544800 Rh2BG557300 Rh2BG557600 Rh2CG527600 Rh2CG527800 Rh2CG527900 Rh2DG566400 Rh2DG566600 Rh2DG567100 Rh4CG047800
rosa_wichuraiana	Rw2G045030 Rw2G045050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	487
AccB1I	GGYRCC	2 cut(s)	325, 361
AccII	CGCG	1 cut(s)	150
AclWI	GGATC	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	468
AfaI	GTAC	2 cut(s)	143, 386
AfiI	CCNNNNNNNGG	1 cut(s)	485
AflII	CTTAAG	1 cut(s)	292
AgsI	TTSAA	3 cut(s)	64, 80, 280
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	4 cut(s)	19, 214, 297, 373
AluI	AGCT	4 cut(s)	19, 214, 297, 373
AlwI	GGATC	1 cut(s)	206
AlwNI	CAGNNNCTG	1 cut(s)	138
AoxI	GGCC	1 cut(s)	227
ApeKI	GCWGC	1 cut(s)	430
AsiSI	GCGATCGC	1 cut(s)	57
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	127
AsuNHI	GCTAGC	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	127
AxyI	CCTNAGG	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	364
BanI	GGYRCC	2 cut(s)	325, 361
BauI	CACGAG	2 cut(s)	122, 233
BbvI	GCAGC	1 cut(s)	417
BciT130I	CCWGG	1 cut(s)	50
BfaI	CTAG	1 cut(s)	264
BfrI	CTTAAG	1 cut(s)	292
BfuAI	ACCTGC	1 cut(s)	487
BisI	GCNGC	1 cut(s)	431
BlsI	GCNGC	1 cut(s)	432
Bme1390I	CCNGG	1 cut(s)	50
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	2 cut(s)	327, 363
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	2 cut(s)	16, 264
BmtI	GCTAGC	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	418
BsaAI	YACGTR	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	272, 321
Bsc4I	CCNNNNNNNGG	1 cut(s)	485
Bse1I	ACTGG	1 cut(s)	143
Bse21I	CCTNAGG	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	272, 321
BseLI	CCNNNNNNNGG	1 cut(s)	485
BseMII	CTCAG	1 cut(s)	145
BseNI	ACTGG	1 cut(s)	143
BseSI	GKGCMC	1 cut(s)	364
BseXI	GCAGC	1 cut(s)	417
Bsh1236I	CGCG	1 cut(s)	150
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	229
BshNI	GGYRCC	2 cut(s)	325, 361
BsiEI	CGRYCG	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	485
BsnI	GGCC	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	2 cut(s)	54, 198
Bsp19I	CCATGG	1 cut(s)	321
Bsp68I	TCGCGA	1 cut(s)	150
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	1 cut(s)	144
BspFNI	CGCG	1 cut(s)	150
BspHI	TCATGA	1 cut(s)	168
BspLI	GGNNCC	2 cut(s)	327, 363
BspMI	ACCTGC	1 cut(s)	487
BspOI	GCTAGC	1 cut(s)	267
BspPI	GGATC	1 cut(s)	206
BspT107I	GGYRCC	2 cut(s)	325, 361
BspTI	CTTAAG	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	143
BssECI	CCNNGG	2 cut(s)	272, 321
BssMI	GATC	2 cut(s)	54, 198
BssSI	CACGAG	2 cut(s)	122, 233
BssT1I	CCWWGG	2 cut(s)	272, 321
Bst2BI	CACGAG	2 cut(s)	122, 233
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	3 cut(s)	72, 382, 392
Bst6I	CTCTTC	1 cut(s)	41
BstAFI	CTTAAG	1 cut(s)	292
BstBAI	YACGTR	1 cut(s)	288
BstC8I	GCNNGC	4 cut(s)	87, 91, 265, 269
BstDEI	CTNAG	1 cut(s)	131
BstDSI	CCRYGG	1 cut(s)	321
BstENI	CCTNNNNNAGG	1 cut(s)	483
BstFNI	CGCG	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	2 cut(s)	57, 201
BstMBI	GATC	2 cut(s)	54, 198
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 156, 430
BstNI	CCWGG	1 cut(s)	50
BstNSI	RCATGY	2 cut(s)	93, 271
BstSCI	CCNGG	1 cut(s)	48
BstSLI	GKGCMC	1 cut(s)	364
BstUI	CGCG	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	417
Bsu36I	CCTNAGG	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	229
BtgI	CCRYGG	1 cut(s)	321
BtsIMutI	CAGTG	1 cut(s)	230
BtuMI	TCGCGA	1 cut(s)	150
BveI	ACCTGC	1 cut(s)	487
Cac8I	GCNNGC	4 cut(s)	87, 91, 265, 269
CaiI	CAGNNNCTG	1 cut(s)	138
CciI	TCATGA	1 cut(s)	168
CfoI	GCGC	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	127
Csp6I	GTAC	2 cut(s)	142, 385
CviAII	CATG	6 cut(s)	90, 169, 202, 268, 322, 348
CviJI	RGCY	8 cut(s)	19, 214, 229, 263, 297, 373, 416, 430
CviKI_1	RGCY	8 cut(s)	19, 214, 229, 263, 297, 373, 416, 430
CviQI	GTAC	2 cut(s)	142, 385
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	2 cut(s)	56, 200
DpnII	GATC	2 cut(s)	54, 198
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco130I	CCWWGG	2 cut(s)	272, 321
Eco47I	GGWCC	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	468
Eco81I	CCTNAGG	1 cut(s)	131
EcoNI	CCTNNNNNAGG	1 cut(s)	483
EcoRII	CCWGG	1 cut(s)	48
EcoT14I	CCWWGG	2 cut(s)	272, 321
ErhI	CCWWGG	2 cut(s)	272, 321
FaeI	CATG	6 cut(s)	93, 172, 205, 271, 325, 351
FaiI	YATR	9 cut(s)	91, 170, 203, 252, 269, 323, 349, 419, 456
FalI	AAGNNNNNCTT	2 cut(s)	466, 498
FatI	CATG	6 cut(s)	89, 168, 201, 267, 321, 347
Fnu4HI	GCNGC	1 cut(s)	431
Fsp4HI	GCNGC	1 cut(s)	431
FspBI	CTAG	1 cut(s)	264
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	1 cut(s)	431
HaeIII	GGCC	1 cut(s)	229
HapII	CCGG	1 cut(s)	156
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	6 cut(s)	93, 172, 205, 271, 325, 351
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	1 cut(s)	152
HpaI	GTTAAC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	156
Hpy166II	GTNNAC	4 cut(s)	127, 144, 244, 385
Hpy188III	TCNNGA	6 cut(s)	133, 149, 169, 196, 354, 397
Hpy8I	GTNNAC	4 cut(s)	127, 144, 244, 385
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	1 cut(s)	351
HpyCH4III	ACNGT	3 cut(s)	72, 382, 392
HpyCH4IV	ACGT	2 cut(s)	192, 287
HpyCH4V	TGCA	2 cut(s)	338, 461
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 156, 430
HpyF3I	CTNAG	1 cut(s)	131
HpySE526I	ACGT	2 cut(s)	192, 287
Hsp92II	CATG	6 cut(s)	93, 172, 205, 271, 325, 351
HspAI	GCGC	1 cut(s)	83
KspAI	GTTAAC	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	54, 198
LmnI	GCTCC	1 cut(s)	51
Lsp1109I	GCAGC	1 cut(s)	417
LweI	GCATC	2 cut(s)	16, 264
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	2 cut(s)	192, 287
MaeIII	GTNAC	1 cut(s)	30
MalI	GATC	2 cut(s)	56, 200
MboI	GATC	2 cut(s)	54, 198
MboII	GAAGA	2 cut(s)	28, 505
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	1 cut(s)	341
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	6 cut(s)	50, 104, 108, 116, 140, 240
MseI	TTAA	3 cut(s)	243, 293, 505
MslI	CAYNNNNRTG	2 cut(s)	122, 320
MspCI	CTTAAG	1 cut(s)	292
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	50
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	3 cut(s)	99, 156, 430
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	2 cut(s)	54, 198
NheI	GCTAGC	1 cut(s)	263
NlaIII	CATG	6 cut(s)	93, 172, 205, 271, 325, 351
NlaIV	GGNNCC	2 cut(s)	327, 363
NruI	TCGCGA	1 cut(s)	150
NspI	RCATGY	2 cut(s)	93, 271
PaeI	GCATGC	2 cut(s)	93, 271
PagI	TCATGA	1 cut(s)	168
PflFI	GACNNNGTC	1 cut(s)	349
PkrI	GCNGC	1 cut(s)	432
Ple19I	CGATCG	1 cut(s)	57
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
Ppu21I	YACGTR	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	2 cut(s)	327, 363
PspPI	GGNCC	1 cut(s)	127
PstNI	CAGNNNCTG	1 cut(s)	138
PsyI	GACNNNGTC	1 cut(s)	349
PvuI	CGATCG	1 cut(s)	57
RgaI	GCGATCGC	1 cut(s)	57
RruI	TCGCGA	1 cut(s)	150
RsaI	GTAC	2 cut(s)	143, 386
RsaNI	GTAC	2 cut(s)	142, 385
RseI	CAYNNNNRTG	2 cut(s)	122, 320
SaqAI	TTAA	3 cut(s)	243, 293, 505
SatI	GCNGC	1 cut(s)	431
Sau3AI	GATC	2 cut(s)	54, 198
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	364
SfaAI	GCGATCGC	1 cut(s)	57
SfaNI	GCATC	2 cut(s)	16, 264
SgfI	GCGATCGC	1 cut(s)	57
SinI	GGWCC	1 cut(s)	127
SmiMI	CAYNNNNRTG	2 cut(s)	122, 320
SmlI	CTYRAG	2 cut(s)	292, 397
SmoI	CTYRAG	2 cut(s)	292, 397
SphI	GCATGC	2 cut(s)	93, 271
Sse9I	AATT	1 cut(s)	341
SspI	AATATT	1 cut(s)	333
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	48
StyI	CCWWGG	2 cut(s)	272, 321
TaaI	ACNGT	3 cut(s)	72, 382, 392
TaiI	ACGT	2 cut(s)	195, 290
TaqII	GACCGA	1 cut(s)	188
TasI	AATT	1 cut(s)	341
TatI	WGTACW	1 cut(s)	384
Tru1I	TTAA	3 cut(s)	243, 293, 505
Tru9I	TTAA	3 cut(s)	243, 293, 505
TscAI	CASTG	1 cut(s)	230
TseI	GCWGC	1 cut(s)	430
TspGWI	ACGGA	1 cut(s)	315
TspRI	CASTG	1 cut(s)	230
Tth111I	GACNNNGTC	1 cut(s)	349
Vha464I	CTTAAG	1 cut(s)	292
VpaK11BI	GGWCC	1 cut(s)	127
XagI	CCTNNNNNAGG	1 cut(s)	483
XceI	RCATGY	2 cut(s)	93, 271
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.