Rroxscaffold_2G00090310

Transmembrane protein 97-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001495
Physical Location & Seq
Reverse (-)
12091412 .. 12092606
1195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00090310.1

Sequence Viewer

Length: 483 bp
ATGGGTGCTTTTCTGATGCTAATTGACGCCATACTCTTTTTCTTCTTCATCGTGATGGCGACGGCGCCCATGGTGGACGCGCAGCTAGTTCTGCCTCTGAGCCTCTTTCCGGAGTGGATGGTGGAGTACAAGAACTGGTATGTCGGTGGGTTCAACGACTATTGCTATGTGGAGAAGCCTCATTTCTTTATTGGTCTCATCTTGGTTGAACTTGTATTCCAGTGGCCTCTTGCCCTCGCTAACTTGTATGGGATGTTGGCCGGAAAGTCGTGGTACAACACCACTTGCTTGGTCTATGGCGCGTCATTCTTCACCACAATGGTCACAGCATTGACAGAGCTCTTAGGGTCTGGCAAGGCATCGGATAAGTTGTTGCTATTGAACTACCCCTTTTTGGGGTTCAGTCTCTTGGCCATACTACGTGGTCTGCTCCGCCCATCATCGTCTACTTCAAGCAAGGTCACAAAGAAGAAAAGGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2781

Protein Analysis

160

Amino Acids

18.02

Weight (kDa)

8.87

Isoelectric Point (pI)

23.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EBP PF05241 39 - 139 2.7e-11 EXPERA (EXPanded EBP superfamily)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 64
AccI GTMKAC 1 cut(s) 446
AccII CGCG 2 cut(s) 80, 302
AccIII TCCGGA 1 cut(s) 109
AciI CCGC 1 cut(s) 433
AcoI YGGCCR 2 cut(s) 258, 411
AcyI GRCGYC 2 cut(s) 27, 65
AfaI GTAC 2 cut(s) 128, 275
AfiI CCNNNNNNNGG 4 cut(s) 109, 394, 395, 396
AgsI TTSAA 4 cut(s) 154, 209, 382, 453
AloI GAACNNNNNNTCC 2 cut(s) 201, 233
AluBI AGCT 2 cut(s) 85, 340
AluI AGCT 2 cut(s) 85, 340
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 2 cut(s) 200, 410
Aor13HI TCCGGA 1 cut(s) 109
AoxI GGCC 3 cut(s) 224, 258, 411
ApeKI GCWGC 1 cut(s) 82
AspLEI GCGC 3 cut(s) 67, 82, 302
AsuHPI GGTGA 1 cut(s) 304
BalI TGGCCA 1 cut(s) 413
BanI GGYRCC 1 cut(s) 64
BanII GRGCYC 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 342
BbvI GCAGC 1 cut(s) 94
BccI CCATC 3 cut(s) 49, 112, 445
BceAI ACGGC 1 cut(s) 78
BcoDI GTCTC 2 cut(s) 200, 410
BfaI CTAG 1 cut(s) 86
BfoI RGCGCY 1 cut(s) 68
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
BmiI GGNNCC 1 cut(s) 66
BmsI GCATC 2 cut(s) 6, 368
BsaAI YACGTR 1 cut(s) 422
BsaHI GRCGYC 2 cut(s) 27, 65
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 69
BsaWI WCCGGW 1 cut(s) 109
Bsc4I CCNNNNNNNGG 4 cut(s) 109, 394, 395, 396
Bse1I ACTGG 2 cut(s) 140, 220
BseAI TCCGGA 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 2 cut(s) 123, 258
BseLI CCNNNNNNNGG 4 cut(s) 109, 394, 395, 396
BseMII CTCAG 1 cut(s) 89
BseNI ACTGG 2 cut(s) 140, 220
BseXI GCAGC 1 cut(s) 94
Bsh1236I CGCG 2 cut(s) 80, 302
BshFI GGCC 3 cut(s) 226, 260, 413
BshNI GGYRCC 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 342
BsiSI CCGG 2 cut(s) 110, 261
BslI CCNNNNNNNGG 4 cut(s) 109, 394, 395, 396
BsmAI GTCTC 2 cut(s) 200, 410
BsnI GGCC 3 cut(s) 226, 260, 413
Bso31I GGTCTC 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 342
Bsp13I TCCGGA 1 cut(s) 109
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 1 cut(s) 433
BspANI GGCC 3 cut(s) 226, 260, 413
BspCNI CTCAG 1 cut(s) 90
BspEI TCCGGA 1 cut(s) 109
BspFNI CGCG 2 cut(s) 80, 302
BspLI GGNNCC 1 cut(s) 66
BspT107I GGYRCC 1 cut(s) 64
BspTNI GGTCTC 1 cut(s) 200
BsrI ACTGG 2 cut(s) 140, 220
BssECI CCNNGG 1 cut(s) 69
BssNI GRCGYC 2 cut(s) 27, 65
BssT1I CCWWGG 1 cut(s) 69
BstACI GRCGYC 2 cut(s) 27, 65
BstBAI YACGTR 1 cut(s) 422
BstDEI CTNAG 2 cut(s) 98, 343
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 2 cut(s) 123, 258
BstFNI CGCG 2 cut(s) 80, 302
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 3 cut(s) 67, 82, 302
BstMAI GTCTC 2 cut(s) 200, 410
BstMWI GCNNNNNNNGC 1 cut(s) 91
BstUI CGCG 2 cut(s) 80, 302
BstV1I GCAGC 1 cut(s) 94
BstXI CCANNNNNNTGG 1 cut(s) 289
BsuRI GGCC 3 cut(s) 226, 260, 413
BtgI CCRYGG 1 cut(s) 69
BtsCI GGATG 2 cut(s) 123, 258
BtsIMutI CAGTG 1 cut(s) 227
CfoI GCGC 3 cut(s) 67, 82, 302
CseI GACGC 3 cut(s) 35, 86, 291
Csp6I GTAC 2 cut(s) 127, 274
CviAII CATG 1 cut(s) 70
CviJI RGCY 7 cut(s) 85, 102, 178, 226, 260, 340, 413
CviKI_1 RGCY 7 cut(s) 85, 102, 178, 226, 260, 340, 413
CviQI GTAC 2 cut(s) 127, 274
DdeI CTNAG 2 cut(s) 98, 343
DinI GGCGCC 1 cut(s) 66
EaeI YGGCCR 2 cut(s) 258, 411
EciI GGCGGA 1 cut(s) 422
Ecl136II GAGCTC 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 342
Eco31I GGTCTC 1 cut(s) 200
Eco53kI GAGCTC 1 cut(s) 340
EcoICRI GAGCTC 1 cut(s) 340
EcoT14I CCWWGG 1 cut(s) 69
EcoT38I GRGCYC 1 cut(s) 342
EgeI GGCGCC 1 cut(s) 66
EheI GGCGCC 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 1 cut(s) 73
FaiI YATR 7 cut(s) 32, 71, 141, 168, 249, 297, 416
FatI CATG 1 cut(s) 69
FblI GTMKAC 1 cut(s) 446
Fnu4HI GCNGC 1 cut(s) 83
FokI GGATG 2 cut(s) 130, 265
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 1 cut(s) 83
FspBI CTAG 1 cut(s) 86
GlaI GCGC 3 cut(s) 66, 81, 301
GluI GCNGC 1 cut(s) 83
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 3 cut(s) 226, 260, 413
HapII CCGG 2 cut(s) 110, 261
HgaI GACGC 3 cut(s) 35, 86, 291
HhaI GCGC 3 cut(s) 67, 82, 302
Hin1I GRCGYC 2 cut(s) 27, 65
Hin1II CATG 1 cut(s) 73
Hin6I GCGC 3 cut(s) 65, 80, 300
HinP1I GCGC 3 cut(s) 65, 80, 300
HpaII CCGG 2 cut(s) 110, 261
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 2 cut(s) 76, 447
Hpy188I TCNGA 3 cut(s) 15, 99, 364
Hpy188III TCNNGA 2 cut(s) 52, 110
Hpy8I GTNNAC 2 cut(s) 76, 447
Hpy99I CGWCG 1 cut(s) 64
HpyCH4IV ACGT 1 cut(s) 421
HpyF10VI GCNNNNNNNGC 1 cut(s) 91
HpyF3I CTNAG 2 cut(s) 98, 343
HpySE526I ACGT 1 cut(s) 421
Hsp92I GRCGYC 2 cut(s) 27, 65
Hsp92II CATG 1 cut(s) 73
HspAI GCGC 3 cut(s) 65, 80, 300
KasI GGCGCC 1 cut(s) 64
Kpn2I TCCGGA 1 cut(s) 109
LmnI GCTCC 1 cut(s) 435
LpnPI CCDG 5 cut(s) 121, 123, 233, 274, 336
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 2 cut(s) 6, 368
MaeI CTAG 1 cut(s) 86
MaeII ACGT 1 cut(s) 421
MaeIII GTNAC 2 cut(s) 322, 460
MboII GAAGA 4 cut(s) 34, 37, 301, 481
MhlI GDGCHC 1 cut(s) 342
MlsI TGGCCA 1 cut(s) 413
MluCI AATT 1 cut(s) 21
MluNI TGGCCA 1 cut(s) 413
Mly113I GGCGCC 1 cut(s) 65
MnlI CCTC 5 cut(s) 105, 113, 189, 237, 245
Mox20I TGGCCA 1 cut(s) 413
MroI TCCGGA 1 cut(s) 109
MscI TGGCCA 1 cut(s) 413
MslI CAYNNNNRTG 2 cut(s) 53, 317
Msp20I TGGCCA 1 cut(s) 413
MspI CCGG 2 cut(s) 110, 261
MvnI CGCG 2 cut(s) 80, 302
MwoI GCNNNNNNNGC 1 cut(s) 91
NarI GGCGCC 1 cut(s) 65
NcoI CCATGG 1 cut(s) 69
NlaIII CATG 1 cut(s) 73
NlaIV GGNNCC 1 cut(s) 66
NmuCI GTSAC 2 cut(s) 322, 460
PkrI GCNGC 1 cut(s) 84
PluTI GGCGCC 1 cut(s) 68
Ppu21I YACGTR 1 cut(s) 422
Psp124BI GAGCTC 1 cut(s) 342
PspN4I GGNNCC 1 cut(s) 66
RsaI GTAC 2 cut(s) 128, 275
RsaNI GTAC 2 cut(s) 127, 274
RseI CAYNNNNRTG 2 cut(s) 53, 317
SacI GAGCTC 1 cut(s) 342
SatI GCNGC 1 cut(s) 83
SduI GDGCHC 1 cut(s) 342
SetI ASST 4 cut(s) 87, 342, 424, 462
SfaNI GCATC 2 cut(s) 6, 368
SfoI GGCGCC 1 cut(s) 66
SmiMI CAYNNNNRTG 2 cut(s) 53, 317
Sse9I AATT 1 cut(s) 21
SsiI CCGC 1 cut(s) 433
SspDI GGCGCC 1 cut(s) 64
SspMI CTAG 1 cut(s) 86
SstI GAGCTC 1 cut(s) 342
StyI CCWWGG 1 cut(s) 69
TaiI ACGT 1 cut(s) 424
TasI AATT 1 cut(s) 21
TatI WGTACW 1 cut(s) 126
TscAI CASTG 1 cut(s) 227
TseFI GTSAC 2 cut(s) 322, 460
TseI GCWGC 1 cut(s) 82
Tsp45I GTSAC 2 cut(s) 322, 460
TspDTI ATGAA 1 cut(s) 37
TspRI CASTG 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 446
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.