Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001495

Physical Location & Seq

Genomic Coordinates Reverse (-)

12093258 .. 12094166

Gene Structure 909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00090320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCAGTTTCGCCTATGGTGCACGCGCAGTTTGTTCTGCCTCTGAGCTTCTACCCGGAGTGGATGGTGGAGCAGAAGAACTGGTACATGCGCGAGTTCGATGACTACTTCTATGTCGAGAAGCCTGATTTCTTTTTTGGTCTGGTTTTGGACTTTTGGTTGAGCTTGTTTTCCAGTGGCCTCTCGGCTCTCGCCCTTGCCATCTTGTACGGGATGTTGGCTTCCAAGAATTGGTACAGTACCACTTGCTTGGTTCATGGTGCCTCTTTCTTCACCACCATGGTGACTGCATTAGCGGGACTCATTGGATCAGACAAGGCATCTGGTAAGGTCTTAATATTGTACTACACTTTTTTGGGGTTCGCTGTGCTGACTCCTGACCATATTTTGAGGGTTAATGCCACCATCAACTACTTCAAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2781

Protein Analysis

141

Amino Acids

16.09

Weight (kDa)

5.81

Isoelectric Point (pI)

31.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05210 AT2G32380
fragaria_vesca	FvH4_6g43330 FvH4_6g43370 FvH4_6g43380 FvH4_7g06210
malus_domestica	MD09G1107600.v1.1 MD17G1095200.v1.1 MD17G1095300.v1.1 MD17G1095500.v1.1 MD17G1095800.v1.1
prunus_persica	Prupe.3G218100_v2.0.a1 Prupe.3G218400_v2.0.a1 Prupe.3G218400_v2.0.a1
pyrus_communis	pycom09g02970 pycom17g09170 pycom17g09180 pycom17g09200 pycom17g09210
rosa_chinensis	RchiOBHm_Chr2g0159661 RchiOBHm_Chr2g0159681 RchiOBHm_Chr2g0159721
rosa_laevigata	RLG00000021171 RLG00000021173 RLG00000021174 RLG00000021176
rosa_multiflora	Rmu_sc0004966.1_g000004 Rmu_sc0011502.1_g000006 Rmu_sc0036321.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090280 Rroxscaffold_2G00090290 Rroxscaffold_2G00090310 Rroxscaffold_2G00090320 Rroxscaffold_2G00090340
rosa_rugosa	Rorug02G0477600 Rorug02G0477800 Rorug02G0478000
rosa_samantha	Rh2AG544500 Rh2AG544700 Rh2AG544800 Rh2BG557300 Rh2BG557600 Rh2CG527600 Rh2CG527800 Rh2CG527900 Rh2DG566400 Rh2DG566600 Rh2DG567100 Rh4CG047800
rosa_wichuraiana	Rw2G045030 Rw2G045050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	260
AccB7I	CCANNNNNTGG	1 cut(s)	231
AccII	CGCG	2 cut(s)	26, 93
AciI	CCGC	1 cut(s)	296
AclWI	GGATC	1 cut(s)	316
AfaI	GTAC	5 cut(s)	86, 209, 236, 241, 344
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	1 cut(s)	418
AleI	CACNNNNGTG	1 cut(s)	281
AluBI	AGCT	2 cut(s)	48, 165
AluI	AGCT	2 cut(s)	48, 165
Alw21I	GWGCWC	1 cut(s)	24
Alw44I	GTGCAC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	316
AoxI	GGCC	1 cut(s)	178
ApaLI	GTGCAC	1 cut(s)	20
AspLEI	GCGC	2 cut(s)	28, 93
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	265, 295
BaeGI	GKGCMC	1 cut(s)	24
BanI	GGYRCC	1 cut(s)	260
BarI	GAAGNNNNNNTAC	2 cut(s)	68, 100
Bbv12I	GWGCWC	1 cut(s)	24
BccI	CCATC	3 cut(s)	58, 209, 413
BcnI	CCSGG	1 cut(s)	56
Bme1390I	CCNGG	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	1 cut(s)	329
BpuMI	CCSGG	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse1I	ACTGG	2 cut(s)	86, 174
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	2 cut(s)	69, 219
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	2 cut(s)	86, 174
BseSI	GKGCMC	1 cut(s)	24
Bsh1236I	CGCG	2 cut(s)	26, 93
BshFI	GGCC	1 cut(s)	180
BshNI	GGYRCC	1 cut(s)	260
BsiHKAI	GWGCWC	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	312
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmFI	GGGAC	1 cut(s)	312
BsnI	GGCC	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	1 cut(s)	308
Bsp19I	CCATGG	1 cut(s)	279
BspACI	CCGC	1 cut(s)	296
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	1 cut(s)	36
BspFNI	CGCG	2 cut(s)	26, 93
BspLI	GGNNCC	1 cut(s)	262
BspPI	GGATC	1 cut(s)	316
BspT107I	GGYRCC	1 cut(s)	260
BsrI	ACTGG	2 cut(s)	86, 174
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	1 cut(s)	308
BssT1I	CCWWGG	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	44
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	2 cut(s)	69, 219
BstFNI	CGCG	2 cut(s)	26, 93
BstHHI	GCGC	2 cut(s)	28, 93
BstKTI	GATC	1 cut(s)	311
BstMBI	GATC	1 cut(s)	308
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstNSI	RCATGY	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	54
BstSLI	GKGCMC	1 cut(s)	24
BstUI	CGCG	2 cut(s)	26, 93
BstXI	CCANNNNNNTGG	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	69, 219
BtsIMutI	CAGTG	1 cut(s)	181
Cac8I	GCNNGC	1 cut(s)	24
CfoI	GCGC	2 cut(s)	28, 93
Csp6I	GTAC	5 cut(s)	85, 208, 235, 240, 343
CviAII	CATG	3 cut(s)	88, 257, 280
CviJI	RGCY	6 cut(s)	48, 124, 165, 180, 188, 221
CviKI_1	RGCY	6 cut(s)	48, 124, 165, 180, 188, 221
CviQI	GTAC	5 cut(s)	85, 208, 235, 240, 343
DdeI	CTNAG	1 cut(s)	44
DpnI	GATC	1 cut(s)	310
DpnII	GATC	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	3 cut(s)	91, 260, 283
FaiI	YATR	6 cut(s)	17, 89, 114, 258, 281, 384
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	3 cut(s)	87, 256, 279
FauI	CCCGC	1 cut(s)	289
FokI	GGATG	2 cut(s)	76, 226
GlaI	GCGC	2 cut(s)	27, 92
HaeIII	GGCC	1 cut(s)	180
HapII	CCGG	1 cut(s)	56
HhaI	GCGC	2 cut(s)	28, 93
Hin1II	CATG	3 cut(s)	91, 260, 283
Hin6I	GCGC	2 cut(s)	26, 91
HinP1I	GCGC	2 cut(s)	26, 91
HinfI	GANTC	2 cut(s)	300, 373
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	2 cut(s)	265, 295
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	2 cut(s)	45, 313
Hpy188III	TCNNGA	2 cut(s)	118, 377
Hpy8I	GTNNAC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4V	TGCA	2 cut(s)	22, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HpyF3I	CTNAG	1 cut(s)	44
Hsp92II	CATG	3 cut(s)	91, 260, 283
HspAI	GCGC	2 cut(s)	26, 91
Kzo9I	GATC	1 cut(s)	308
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	7 cut(s)	67, 69, 128, 138, 187, 309, 390
LweI	GCATC	1 cut(s)	329
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	1 cut(s)	310
MboI	GATC	1 cut(s)	308
MboII	GAAGA	2 cut(s)	88, 262
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	1 cut(s)	229
MlyI	GAGTC	2 cut(s)	294, 367
MnlI	CCTC	4 cut(s)	51, 191, 274, 384
MseI	TTAA	2 cut(s)	335, 396
MslI	CAYNNNNRTG	2 cut(s)	278, 281
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	56
MvnI	CGCG	2 cut(s)	26, 93
MwoI	GCNNNNNNNGC	1 cut(s)	19
NciI	CCSGG	1 cut(s)	56
NcoI	CCATGG	1 cut(s)	279
NdeII	GATC	1 cut(s)	308
NlaIII	CATG	3 cut(s)	91, 260, 283
NlaIV	GGNNCC	1 cut(s)	262
NmeAIII	GCCGAG	1 cut(s)	164
NmuCI	GTSAC	1 cut(s)	283
NspI	RCATGY	1 cut(s)	91
OliI	CACNNNNGTG	1 cut(s)	281
PflMI	CCANNNNNTGG	1 cut(s)	231
PleI	GAGTC	2 cut(s)	294, 367
PpsI	GAGTC	2 cut(s)	294, 367
PspN4I	GGNNCC	1 cut(s)	262
RsaI	GTAC	5 cut(s)	86, 209, 236, 241, 344
RsaNI	GTAC	5 cut(s)	85, 208, 235, 240, 343
RseI	CAYNNNNRTG	2 cut(s)	278, 281
SaqAI	TTAA	2 cut(s)	335, 396
Sau3AI	GATC	1 cut(s)	308
SchI	GAGTC	2 cut(s)	294, 367
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	3 cut(s)	50, 167, 333
SfaNI	GCATC	1 cut(s)	329
SmiMI	CAYNNNNRTG	2 cut(s)	278, 281
Sse9I	AATT	1 cut(s)	229
SsiI	CCGC	1 cut(s)	296
SspI	AATATT	1 cut(s)	339
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	239
TaqI	TCGA	2 cut(s)	99, 117
TasI	AATT	1 cut(s)	229
TatI	WGTACW	1 cut(s)	342
Tru1I	TTAA	2 cut(s)	335, 396
Tru9I	TTAA	2 cut(s)	335, 396
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	1 cut(s)	245
TspRI	CASTG	1 cut(s)	181
Van91I	CCANNNNNTGG	1 cut(s)	231
VneI	GTGCAC	1 cut(s)	20
XceI	RCATGY	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.