Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001495

Physical Location & Seq

Genomic Coordinates Forward (+)

79590062 .. 79590745

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG566600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGTGACTGCATTAGCGGGACTCATTGGATCAGACAAGGCATCTGGTAAGGTCTTAACATTGTACTACACTTTTTTGGGGTGCGCTGTCCTGACCATACTTCGTGGGTTGATGCCACCATCAACTAGTTCAAACAATGACAAAGCAAGAACAAAAAGGATTGGCGTTCCGAAGAAAATGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2781

Protein Analysis

61

Amino Acids

6.47

Weight (kDa)

10.22

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05210 AT2G32380
fragaria_vesca	FvH4_6g43330 FvH4_6g43370 FvH4_6g43380 FvH4_7g06210
malus_domestica	MD09G1107600.v1.1 MD17G1095200.v1.1 MD17G1095300.v1.1 MD17G1095500.v1.1 MD17G1095800.v1.1
prunus_persica	Prupe.3G218100_v2.0.a1 Prupe.3G218400_v2.0.a1 Prupe.3G218400_v2.0.a1
pyrus_communis	pycom09g02970 pycom17g09170 pycom17g09180 pycom17g09200 pycom17g09210
rosa_chinensis	RchiOBHm_Chr2g0159661 RchiOBHm_Chr2g0159681 RchiOBHm_Chr2g0159721
rosa_laevigata	RLG00000021171 RLG00000021173 RLG00000021174 RLG00000021176
rosa_multiflora	Rmu_sc0004966.1_g000004 Rmu_sc0011502.1_g000006 Rmu_sc0036321.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090280 Rroxscaffold_2G00090290 Rroxscaffold_2G00090310 Rroxscaffold_2G00090320 Rroxscaffold_2G00090340
rosa_rugosa	Rorug02G0477600 Rorug02G0477800 Rorug02G0478000
rosa_samantha	Rh2AG544500 Rh2AG544700 Rh2AG544800 Rh2BG557300 Rh2BG557600 Rh2CG527600 Rh2CG527800 Rh2CG527900 Rh2DG566400 Rh2DG566600 Rh2DG567100 Rh4CG047800
rosa_wichuraiana	Rw2G045030 Rw2G045050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	17
AclWI	GGATC	1 cut(s)	37
AfaI	GTAC	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	132
AhlI	ACTAGT	1 cut(s)	125
AlwI	GGATC	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	16
BccI	CCATC	1 cut(s)	127
BcuI	ACTAGT	1 cut(s)	125
BfaI	CTAG	2 cut(s)	126, 184
BmsI	GCATC	2 cut(s)	50, 102
BslFI	GGGAC	1 cut(s)	33
BsmFI	GGGAC	1 cut(s)	33
Bsp143I	GATC	2 cut(s)	29, 180
BspACI	CCGC	1 cut(s)	17
BspPI	GGATC	1 cut(s)	37
BssMI	GATC	2 cut(s)	29, 180
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	2 cut(s)	32, 183
BstMBI	GATC	2 cut(s)	29, 180
CfoI	GCGC	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	64
CviQI	GTAC	1 cut(s)	64
DpnI	GATC	2 cut(s)	31, 182
DpnII	GATC	2 cut(s)	29, 180
FaiI	YATR	1 cut(s)	98
FaqI	GGGAC	1 cut(s)	33
FauI	CCCGC	1 cut(s)	10
FspBI	CTAG	2 cut(s)	126, 184
GlaI	GCGC	1 cut(s)	85
HhaI	GCGC	1 cut(s)	86
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	1 cut(s)	21
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	2 cut(s)	34, 171
Hpy188III	TCNNGA	1 cut(s)	91
HpyCH4V	TGCA	1 cut(s)	11
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	2 cut(s)	29, 180
LpnPI	CCDG	2 cut(s)	30, 104
LweI	GCATC	2 cut(s)	50, 102
MaeI	CTAG	2 cut(s)	126, 184
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	2 cut(s)	31, 182
MboI	GATC	2 cut(s)	29, 180
MboII	GAAGA	1 cut(s)	184
MlyI	GAGTC	1 cut(s)	15
MseI	TTAA	1 cut(s)	56
NdeII	GATC	2 cut(s)	29, 180
NmuCI	GTSAC	1 cut(s)	4
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	56
Sau3AI	GATC	2 cut(s)	29, 180
SchI	GAGTC	1 cut(s)	15
SetI	ASST	1 cut(s)	54
SfaNI	GCATC	2 cut(s)	50, 102
SgeI	CNNG	7 cut(s)	30, 49, 57, 103, 116, 138, 159
SpeI	ACTAGT	1 cut(s)	125
SsiI	CCGC	1 cut(s)	17
SspMI	CTAG	2 cut(s)	126, 184
TatI	WGTACW	1 cut(s)	63
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TseFI	GTSAC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	4
XspI	CTAG	2 cut(s)	126, 184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.