AT2G32380

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0001495
Physical Location & Seq
Reverse (-)
13746566 .. 13747810
1245 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G32380.1

Sequence Viewer

Length: 507 bp
ATGGGAGCATTTTGCAAGTTGATCGATGCGGTTCTCTTCTTATACTTTGCTCTCATGGCGGTAATTGCGCCGCTTATCGACGGTCAAACGAGTCTTCCCGGCGATATCTTCCCGGCGTTTATCGTCGATCTGAATCGCTGGTACATTGATGAATTTGGAGATTATCTAGTCAAAGAGAAGCCGCATTTCCTAGTCGGACTCGTCTGGCATGAGCTTTTGCTTCTTTGGCCGCTCTCAATCGTCAACGTCTACGCAATTCTCGCTGGGAAATCGTGGTTTGGTACCACCTCAATGGTGTACGGAGCTTCCGTCGTGACTTCTATGGCTGCTATACTGGGAGAGATGATAGGATCAGGGAAGGCATCTGAGAAATTGTTGATGATGTATGTGCCATTCATGGGTGTTGGTATTCTAGCTCTTCTTCGTGGTCTTCTTTCTCAATCCAACAAAAGTGGTGGAGCTGTTGGCAAGAGACCTGCTATTTTGGCCAGGAGAAAGCGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2781

Protein Analysis

168

Amino Acids

18.31

Weight (kDa)

9.27

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EBP PF05241 40 - 141 9.1e-14 EXPERA (EXPanded EBP superfamily)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 484
Acc65I GGTACC 1 cut(s) 281
AccB1I GGYRCC 1 cut(s) 281
AccBSI CCGCTC 1 cut(s) 232
AccI GTMKAC 1 cut(s) 249
AciI CCGC 5 cut(s) 29, 59, 71, 182, 230
AclWI GGATC 1 cut(s) 358
AcoI YGGCCR 2 cut(s) 227, 486
AcsI RAATTY 1 cut(s) 152
AfaI GTAC 3 cut(s) 143, 283, 299
AfiI CCNNNNNNNGG 1 cut(s) 398
AjnI CCWGG 1 cut(s) 488
AluBI AGCT 4 cut(s) 214, 305, 416, 461
AluI AGCT 4 cut(s) 214, 305, 416, 461
Alw26I GTCTC 1 cut(s) 466
AlwI GGATC 1 cut(s) 358
AoxI GGCC 2 cut(s) 227, 486
ApeKI GCWGC 1 cut(s) 326
ApoI RAATTY 1 cut(s) 152
Asp718I GGTACC 1 cut(s) 281
AspLEI GCGC 1 cut(s) 70
AsuC2I CCSGG 2 cut(s) 99, 113
BalI TGGCCA 1 cut(s) 488
BanI GGYRCC 1 cut(s) 281
BbsI GAAGAC 2 cut(s) 86, 422
BbvI GCAGC 1 cut(s) 313
BcgI CGANNNNNNTGC 2 cut(s) 4, 38
BciT130I CCWGG 1 cut(s) 490
BcnI CCSGG 2 cut(s) 99, 113
BcoDI GTCTC 1 cut(s) 466
BfaI CTAG 3 cut(s) 167, 191, 413
BfuAI ACCTGC 1 cut(s) 484
BisI GCNGC 4 cut(s) 71, 182, 230, 327
BlsI GCNGC 4 cut(s) 72, 183, 231, 328
Bme1390I CCNGG 3 cut(s) 99, 113, 490
BmiI GGNNCC 1 cut(s) 283
BmrFI CCNGG 3 cut(s) 99, 113, 490
BmrI ACTGGG 1 cut(s) 344
BmsI GCATC 2 cut(s) 16, 371
BmuI ACTGGG 1 cut(s) 344
BpiI GAAGAC 2 cut(s) 86, 422
BpuMI CCSGG 2 cut(s) 99, 113
Bsa29I ATCGAT 1 cut(s) 24
BsaBI GATNNNNATC 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 466
BsaXI ACNNNNNCTCC 3 cut(s) 294, 324, 484
Bsc4I CCNNNNNNNGG 1 cut(s) 398
Bse1I ACTGG 1 cut(s) 339
Bse8I GATNNNNATC 1 cut(s) 132
BseBI CCWGG 1 cut(s) 490
BseCI ATCGAT 1 cut(s) 24
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 398
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 1 cut(s) 339
BseXI GCAGC 1 cut(s) 313
BseYI CCCAGC 1 cut(s) 263
BshFI GGCC 2 cut(s) 229, 488
BshNI GGYRCC 1 cut(s) 281
BshVI ATCGAT 1 cut(s) 24
BsiSI CCGG 2 cut(s) 99, 113
BslI CCNNNNNNNGG 1 cut(s) 398
BsmAI GTCTC 1 cut(s) 466
BsnI GGCC 2 cut(s) 229, 488
Bso31I GGTCTC 1 cut(s) 466
Bsp143I GATC 3 cut(s) 21, 127, 350
BspACI CCGC 5 cut(s) 29, 59, 71, 182, 230
BspANI GGCC 2 cut(s) 229, 488
BspCNI CTCAG 1 cut(s) 358
BspDI ATCGAT 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 283
BspMI ACCTGC 1 cut(s) 484
BspPI GGATC 1 cut(s) 358
BspQI GCTCTTC 1 cut(s) 423
BspT107I GGYRCC 1 cut(s) 281
BspTNI GGTCTC 1 cut(s) 466
BsrBI CCGCTC 1 cut(s) 232
BsrI ACTGG 1 cut(s) 339
BssMI GATC 3 cut(s) 21, 127, 350
Bst2UI CCWGG 1 cut(s) 490
Bst4CI ACNGT 1 cut(s) 83
Bst6I CTCTTC 2 cut(s) 41, 423
BstC8I GCNNGC 1 cut(s) 501
BstDEI CTNAG 1 cut(s) 366
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 3 cut(s) 24, 130, 353
BstMAI GTCTC 1 cut(s) 466
BstMBI GATC 3 cut(s) 21, 127, 350
BstMWI GCNNNNNNNGC 5 cut(s) 56, 65, 226, 260, 485
BstNI CCWGG 1 cut(s) 490
BstSCI CCNGG 3 cut(s) 97, 111, 488
BstV1I GCAGC 1 cut(s) 313
BstV2I GAAGAC 2 cut(s) 86, 422
BstXI CCANNNNNNTGG 1 cut(s) 292
Bsu15I ATCGAT 1 cut(s) 24
BsuRI GGCC 2 cut(s) 229, 488
BsuTUI ATCGAT 1 cut(s) 24
BveI ACCTGC 1 cut(s) 484
Cac8I GCNNGC 1 cut(s) 501
CfoI GCGC 1 cut(s) 70
ClaI ATCGAT 1 cut(s) 24
Csp6I GTAC 3 cut(s) 142, 282, 298
CspCI CAANNNNNGTGG 4 cut(s) 433, 436, 468, 471
CviAII CATG 3 cut(s) 55, 209, 397
CviJI RGCY 8 cut(s) 181, 214, 229, 305, 326, 416, 461, 488
CviKI_1 RGCY 8 cut(s) 181, 214, 229, 305, 326, 416, 461, 488
CviQI GTAC 3 cut(s) 142, 282, 298
DdeI CTNAG 1 cut(s) 366
DpnI GATC 3 cut(s) 23, 129, 352
DpnII GATC 3 cut(s) 21, 127, 350
EaeI YGGCCR 2 cut(s) 227, 486
Eam1104I CTCTTC 2 cut(s) 41, 423
EarI CTCTTC 2 cut(s) 41, 423
Eco31I GGTCTC 1 cut(s) 466
Eco32I GATATC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 488
EcoRV GATATC 1 cut(s) 106
FaeI CATG 3 cut(s) 58, 212, 400
FaiI YATR 7 cut(s) 43, 56, 210, 323, 332, 387, 398
FatI CATG 3 cut(s) 54, 208, 396
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 4 cut(s) 71, 182, 230, 327
Fsp4HI GCNGC 4 cut(s) 71, 182, 230, 327
FspBI CTAG 3 cut(s) 167, 191, 413
GlaI GCGC 1 cut(s) 69
GluI GCNGC 4 cut(s) 71, 182, 230, 327
GsaI CCCAGC 1 cut(s) 267
HaeIII GGCC 2 cut(s) 229, 488
HapII CCGG 2 cut(s) 99, 113
HhaI GCGC 1 cut(s) 70
Hin1II CATG 3 cut(s) 58, 212, 400
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 3 cut(s) 91, 133, 198
HpaII CCGG 2 cut(s) 99, 113
Hpy166II GTNNAC 3 cut(s) 244, 250, 298
Hpy188I TCNGA 3 cut(s) 132, 197, 367
Hpy188III TCNNGA 1 cut(s) 313
Hpy8I GTNNAC 3 cut(s) 244, 250, 298
Hpy99I CGWCG 3 cut(s) 83, 128, 314
HpyAV CCTTC 1 cut(s) 352
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 1 cut(s) 15
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 65, 226, 260, 485
HpyF3I CTNAG 1 cut(s) 366
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 3 cut(s) 58, 212, 400
HspAI GCGC 1 cut(s) 68
KpnI GGTACC 1 cut(s) 285
Kzo9I GATC 3 cut(s) 21, 127, 350
LguI GCTCTTC 1 cut(s) 423
LmnI GCTCC 3 cut(s) 5, 302, 458
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 2 cut(s) 16, 371
MaeI CTAG 3 cut(s) 167, 191, 413
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 1 cut(s) 313
MalI GATC 3 cut(s) 23, 129, 352
MbiI CCGCTC 1 cut(s) 232
MboI GATC 3 cut(s) 21, 127, 350
MboII GAAGA 6 cut(s) 28, 86, 100, 410, 413, 422
MlsI TGGCCA 1 cut(s) 488
MluCI AATT 4 cut(s) 63, 152, 255, 371
MluNI TGGCCA 1 cut(s) 488
MlyI GAGTC 2 cut(s) 100, 192
MmeI TCCRAC 2 cut(s) 175, 468
MnlI CCTC 1 cut(s) 298
Mox20I TGGCCA 1 cut(s) 488
MscI TGGCCA 1 cut(s) 488
MslI CAYNNNNRTG 1 cut(s) 290
Msp20I TGGCCA 1 cut(s) 488
MspI CCGG 2 cut(s) 99, 113
MspR9I CCNGG 3 cut(s) 99, 113, 490
MvaI CCWGG 1 cut(s) 490
MwoI GCNNNNNNNGC 5 cut(s) 56, 65, 226, 260, 485
NciI CCSGG 2 cut(s) 99, 113
NdeII GATC 3 cut(s) 21, 127, 350
NlaIII CATG 3 cut(s) 58, 212, 400
NlaIV GGNNCC 1 cut(s) 283
NmuCI GTSAC 1 cut(s) 313
PciSI GCTCTTC 1 cut(s) 423
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PfeI GAWTC 1 cut(s) 133
PkrI GCNGC 4 cut(s) 72, 183, 231, 328
PleI GAGTC 2 cut(s) 99, 192
PpsI GAGTC 2 cut(s) 99, 192
Psp6I CCWGG 1 cut(s) 488
PspFI CCCAGC 1 cut(s) 263
PspGI CCWGG 1 cut(s) 488
PspN4I GGNNCC 1 cut(s) 283
RsaI GTAC 3 cut(s) 143, 283, 299
RsaNI GTAC 3 cut(s) 142, 282, 298
RseI CAYNNNNRTG 1 cut(s) 290
SapI GCTCTTC 1 cut(s) 423
SatI GCNGC 4 cut(s) 71, 182, 230, 327
Sau3AI GATC 3 cut(s) 21, 127, 350
SchI GAGTC 2 cut(s) 100, 192
ScrFI CCNGG 3 cut(s) 99, 113, 490
SetI ASST 7 cut(s) 216, 249, 290, 307, 418, 463, 478
SfaNI GCATC 2 cut(s) 16, 371
SmiMI CAYNNNNRTG 1 cut(s) 290
Sse9I AATT 4 cut(s) 63, 152, 255, 371
SsiI CCGC 5 cut(s) 29, 59, 71, 182, 230
SspMI CTAG 3 cut(s) 167, 191, 413
StyD4I CCNGG 3 cut(s) 97, 111, 488
TaaI ACNGT 1 cut(s) 83
TaiI ACGT 1 cut(s) 249
TaqI TCGA 3 cut(s) 24, 78, 126
TasI AATT 4 cut(s) 63, 152, 255, 371
TauI GCSGC 3 cut(s) 73, 184, 232
TfiI GAWTC 1 cut(s) 133
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 1 cut(s) 326
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 2 cut(s) 165, 385
TspGWI ACGGA 2 cut(s) 298, 315
XapI RAATTY 1 cut(s) 152
XmiI GTMKAC 1 cut(s) 249
XspI CTAG 3 cut(s) 167, 191, 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.