Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001495

Physical Location & Seq

Genomic Coordinates Forward (+)

33571984 .. 33572863

Gene Structure 880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g43370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGGTGCTTTTCTGATGCTAATTGACGCCATACTTCTTTTCTTCTTCCTCCTAATGGCGACGGCGCCGATCGTCGACGCGCAGTTAGTTCTGCCTCTGAGCCTCTTTCCGGAGTGGATGGTGGAGTACAAGAATTGGTACGTCGGCGGGTTCAACGACTATTGCTATGTGGAGAAGCCTCATTTCTTTGTTGGTCTCATTTTGGTTGAGCTTGTATTCCAATGGCCCCTTGCCCTTGCTAACTTGTACGGAATGCTGGCCGGAAAGTCGTGGTACAACACCACTTGCTTGGACTTGGCCTATGGCGCCTCTATGTTCACCACCATGGTCACAGCATTGACAGAGCTCATAGGTTCTGGCAAGGCATCGGATAAGTTGTTGCTATTGAACTACCCCTTTTTGGGGTTCAGTCTCTTGGCCATGCTTCGTGGGCTGCTCCGCCCATCAACAACGACTACTTCAAGCAAAGGTCACAAAGAGAAAAGGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2781

Protein Analysis

164

Amino Acids

18.3

Weight (kDa)

6.71

Isoelectric Point (pI)

22.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EBP	PF05241	39 - 142	5.3e-09	EXPERA (EXPanded EBP superfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05210 AT2G32380
fragaria_vesca	FvH4_6g43330 FvH4_6g43370 FvH4_6g43380 FvH4_7g06210
malus_domestica	MD09G1107600.v1.1 MD17G1095200.v1.1 MD17G1095300.v1.1 MD17G1095500.v1.1 MD17G1095800.v1.1
prunus_persica	Prupe.3G218100_v2.0.a1 Prupe.3G218400_v2.0.a1 Prupe.3G218400_v2.0.a1
pyrus_communis	pycom09g02970 pycom17g09170 pycom17g09180 pycom17g09200 pycom17g09210
rosa_chinensis	RchiOBHm_Chr2g0159661 RchiOBHm_Chr2g0159681 RchiOBHm_Chr2g0159721
rosa_laevigata	RLG00000021171 RLG00000021173 RLG00000021174 RLG00000021176
rosa_multiflora	Rmu_sc0004966.1_g000004 Rmu_sc0011502.1_g000006 Rmu_sc0036321.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090280 Rroxscaffold_2G00090290 Rroxscaffold_2G00090310 Rroxscaffold_2G00090320 Rroxscaffold_2G00090340
rosa_rugosa	Rorug02G0477600 Rorug02G0477800 Rorug02G0478000
rosa_samantha	Rh2AG544500 Rh2AG544700 Rh2AG544800 Rh2BG557300 Rh2BG557600 Rh2CG527600 Rh2CG527800 Rh2CG527900 Rh2DG566400 Rh2DG566600 Rh2DG567100 Rh4CG047800
rosa_wichuraiana	Rw2G045030 Rw2G045050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	64, 305
AccI	GTMKAC	1 cut(s)	75
AccII	CGCG	1 cut(s)	80
AccIII	TCCGGA	1 cut(s)	109
AciI	CCGC	2 cut(s)	147, 439
AcoI	YGGCCR	2 cut(s)	258, 417
AcyI	GRCGYC	3 cut(s)	27, 65, 306
AfaI	GTAC	4 cut(s)	128, 140, 248, 275
AfiI	CCNNNNNNNGG	5 cut(s)	55, 109, 400, 401, 402
AgsI	TTSAA	3 cut(s)	154, 388, 462
AluBI	AGCT	2 cut(s)	211, 346
AluI	AGCT	2 cut(s)	211, 346
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	2 cut(s)	200, 416
Aor13HI	TCCGGA	1 cut(s)	109
AoxI	GGCC	4 cut(s)	224, 258, 297, 417
ApeKI	GCWGC	1 cut(s)	433
AspLEI	GCGC	3 cut(s)	67, 82, 308
AspS9I	GGNCC	1 cut(s)	225
AsuHPI	GGTGA	1 cut(s)	310
BalI	TGGCCA	1 cut(s)	419
BanI	GGYRCC	2 cut(s)	64, 305
BanII	GRGCYC	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	420
BccI	CCATC	2 cut(s)	112, 451
BceAI	ACGGC	1 cut(s)	78
BcoDI	GTCTC	2 cut(s)	200, 416
BfoI	RGCGCY	2 cut(s)	68, 309
BisI	GCNGC	1 cut(s)	434
BlsI	GCNGC	1 cut(s)	435
BmgT120I	GGNCC	1 cut(s)	225
BmiI	GGNNCC	3 cut(s)	66, 227, 307
BmsI	GCATC	2 cut(s)	6, 374
BsaHI	GRCGYC	3 cut(s)	27, 65, 306
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	324
BsaWI	WCCGGW	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	5 cut(s)	55, 109, 400, 401, 402
BseAI	TCCGGA	1 cut(s)	109
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	1 cut(s)	123
BseLI	CCNNNNNNNGG	5 cut(s)	55, 109, 400, 401, 402
BseMII	CTCAG	1 cut(s)	89
BseXI	GCAGC	1 cut(s)	420
Bsh1236I	CGCG	1 cut(s)	80
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	4 cut(s)	226, 260, 299, 419
BshNI	GGYRCC	2 cut(s)	64, 305
BsiEI	CGRYCG	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	348
BsiSI	CCGG	2 cut(s)	110, 261
BslI	CCNNNNNNNGG	5 cut(s)	55, 109, 400, 401, 402
BsmAI	GTCTC	2 cut(s)	200, 416
BsmI	GAATGC	1 cut(s)	258
BsnI	GGCC	4 cut(s)	226, 260, 299, 419
Bso31I	GGTCTC	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp13I	TCCGGA	1 cut(s)	109
Bsp143I	GATC	1 cut(s)	69
Bsp19I	CCATGG	1 cut(s)	324
BspACI	CCGC	2 cut(s)	147, 439
BspANI	GGCC	4 cut(s)	226, 260, 299, 419
BspCNI	CTCAG	1 cut(s)	90
BspEI	TCCGGA	1 cut(s)	109
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	3 cut(s)	66, 227, 307
BspT107I	GGYRCC	2 cut(s)	64, 305
BspTNI	GGTCTC	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	1 cut(s)	69
BssNI	GRCGYC	3 cut(s)	27, 65, 306
BssT1I	CCWWGG	1 cut(s)	324
BstACI	GRCGYC	3 cut(s)	27, 65, 306
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	1 cut(s)	98
BstDSI	CCRYGG	1 cut(s)	324
BstF5I	GGATG	1 cut(s)	123
BstFNI	CGCG	1 cut(s)	80
BstH2I	RGCGCY	2 cut(s)	68, 309
BstHHI	GCGC	3 cut(s)	67, 82, 308
BstKTI	GATC	1 cut(s)	72
BstMAI	GTCTC	2 cut(s)	200, 416
BstMBI	GATC	1 cut(s)	69
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 430
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	1 cut(s)	420
BstXI	CCANNNNNNTGG	1 cut(s)	289
BsuRI	GGCC	4 cut(s)	226, 260, 299, 419
BtgI	CCRYGG	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	123
Cac8I	GCNNGC	1 cut(s)	258
CfoI	GCGC	3 cut(s)	67, 82, 308
Cfr13I	GGNCC	1 cut(s)	225
CseI	GACGC	2 cut(s)	35, 86
Csp6I	GTAC	4 cut(s)	127, 139, 247, 274
CviAII	CATG	2 cut(s)	325, 421
CviJI	RGCY	9 cut(s)	102, 178, 211, 226, 260, 299, 346, 419, 433
CviKI_1	RGCY	9 cut(s)	102, 178, 211, 226, 260, 299, 346, 419, 433
CviQI	GTAC	4 cut(s)	127, 139, 247, 274
DdeI	CTNAG	1 cut(s)	98
DinI	GGCGCC	2 cut(s)	66, 307
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
EaeI	YGGCCR	2 cut(s)	258, 417
EciI	GGCGGA	1 cut(s)	428
Ecl136II	GAGCTC	1 cut(s)	346
Eco130I	CCWWGG	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	348
Eco31I	GGTCTC	1 cut(s)	200
Eco53kI	GAGCTC	1 cut(s)	346
EcoICRI	GAGCTC	1 cut(s)	346
EcoT14I	CCWWGG	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	348
EgeI	GGCGCC	2 cut(s)	66, 307
EheI	GGCGCC	2 cut(s)	66, 307
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	2 cut(s)	328, 424
FaiI	YATR	7 cut(s)	32, 168, 303, 314, 326, 350, 422
FatI	CATG	2 cut(s)	324, 420
FauI	CCCGC	1 cut(s)	140
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	1 cut(s)	434
FokI	GGATG	1 cut(s)	130
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	1 cut(s)	434
GlaI	GCGC	3 cut(s)	66, 81, 307
GluI	GCNGC	1 cut(s)	434
HaeII	RGCGCY	2 cut(s)	68, 309
HaeIII	GGCC	4 cut(s)	226, 260, 299, 419
HapII	CCGG	2 cut(s)	110, 261
HgaI	GACGC	2 cut(s)	35, 86
HhaI	GCGC	3 cut(s)	67, 82, 308
Hin1I	GRCGYC	3 cut(s)	27, 65, 306
Hin1II	CATG	2 cut(s)	328, 424
Hin6I	GCGC	3 cut(s)	65, 80, 306
HinP1I	GCGC	3 cut(s)	65, 80, 306
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HpaII	CCGG	2 cut(s)	110, 261
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	2 cut(s)	76, 318
Hpy188I	TCNGA	3 cut(s)	15, 99, 370
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	2 cut(s)	76, 318
Hpy99I	CGWCG	4 cut(s)	64, 77, 80, 146
HpyCH4IV	ACGT	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 430
HpyF3I	CTNAG	1 cut(s)	98
HpySE526I	ACGT	1 cut(s)	141
Hsp92I	GRCGYC	3 cut(s)	27, 65, 306
Hsp92II	CATG	2 cut(s)	328, 424
HspAI	GCGC	3 cut(s)	65, 80, 306
KasI	GGCGCC	2 cut(s)	64, 305
Kpn2I	TCCGGA	1 cut(s)	109
Kzo9I	GATC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	441
LpnPI	CCDG	4 cut(s)	123, 242, 274, 342
Lsp1109I	GCAGC	1 cut(s)	420
LweI	GCATC	2 cut(s)	6, 374
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	2 cut(s)	328, 470
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MboII	GAAGA	2 cut(s)	34, 37
MhlI	GDGCHC	1 cut(s)	348
MlsI	TGGCCA	1 cut(s)	419
MluCI	AATT	2 cut(s)	21, 133
MluNI	TGGCCA	1 cut(s)	419
Mly113I	GGCGCC	2 cut(s)	65, 306
MnlI	CCTC	5 cut(s)	59, 105, 113, 189, 319
Mox20I	TGGCCA	1 cut(s)	419
MroI	TCCGGA	1 cut(s)	109
MscI	TGGCCA	1 cut(s)	419
MslI	CAYNNNNRTG	1 cut(s)	323
Msp20I	TGGCCA	1 cut(s)	419
MspI	CCGG	2 cut(s)	110, 261
Mva1269I	GAATGC	1 cut(s)	258
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	2 cut(s)	305, 430
NarI	GGCGCC	2 cut(s)	65, 306
NcoI	CCATGG	1 cut(s)	324
NdeII	GATC	1 cut(s)	69
NlaIII	CATG	2 cut(s)	328, 424
NlaIV	GGNNCC	3 cut(s)	66, 227, 307
NmuCI	GTSAC	2 cut(s)	328, 470
PctI	GAATGC	1 cut(s)	258
PkrI	GCNGC	1 cut(s)	435
Ple19I	CGATCG	1 cut(s)	72
PluTI	GGCGCC	2 cut(s)	68, 309
Psp124BI	GAGCTC	1 cut(s)	348
PspN4I	GGNNCC	3 cut(s)	66, 227, 307
PspPI	GGNCC	1 cut(s)	225
PvuI	CGATCG	1 cut(s)	72
RsaI	GTAC	4 cut(s)	128, 140, 248, 275
RsaNI	GTAC	4 cut(s)	127, 139, 247, 274
RseI	CAYNNNNRTG	1 cut(s)	323
SacI	GAGCTC	1 cut(s)	348
SalI	GTCGAC	1 cut(s)	74
SatI	GCNGC	1 cut(s)	434
Sau3AI	GATC	1 cut(s)	69
Sau96I	GGNCC	1 cut(s)	225
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	5 cut(s)	144, 213, 348, 355, 472
SfaNI	GCATC	2 cut(s)	6, 374
SfoI	GGCGCC	2 cut(s)	66, 307
SgrDI	CGTCGACG	1 cut(s)	74
SmiMI	CAYNNNNRTG	1 cut(s)	323
Sse9I	AATT	2 cut(s)	21, 133
SsiI	CCGC	2 cut(s)	147, 439
SspDI	GGCGCC	2 cut(s)	64, 305
SstI	GAGCTC	1 cut(s)	348
StyI	CCWWGG	1 cut(s)	324
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	1 cut(s)	75
TasI	AATT	2 cut(s)	21, 133
TatI	WGTACW	1 cut(s)	126
TseFI	GTSAC	2 cut(s)	328, 470
TseI	GCWGC	1 cut(s)	433
Tsp45I	GTSAC	2 cut(s)	328, 470
TspGWI	ACGGA	1 cut(s)	264
XmiI	GTMKAC	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.