Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001495

Physical Location & Seq

Genomic Coordinates Forward (+)

72609016 .. 72610059

Gene Structure 1044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021174

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGGTGCTTTTCTGATGCTAATTGATGCCATACTCTTTTTCTTCTTCATCGTGATGGCGACGGCGCCGATGGTGGATGCGCAGCTAGTTCTGCCTCTGAGCCTCTTTCCGGAGTGGATGGTGGAGTACAAGAACTGGTACGTCGGCGGGTTCAACGACTATTGCTATGTGGAGAAGCCTCATTTCTTTATTGGTCTCATCTTGGTTGAACTTGTATTCCAGTGGCCTCTTGCCCTTGCTAACTTGTATGGGATGTTGGCTGGAAAGTCGTGGTACAACACCACTTGCTTGGTCTATGGCGCGTCTTTTTTCACCACAATGGTCACAGCATTGACAGAGCTCATAGGGTCTGGCAAGGCATCGGATAAGTTGTTGCTATTGAACTACCCGTTTTTGGGGTTCAGTCTCTTGGCCATACTACGTGGTCTGCTCCGCCCATCATCGTCTACTTCAAGCAAGGTCACAAAGAAGAAAAGGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2781

Protein Analysis

161

Amino Acids

18.02

Weight (kDa)

8.87

Isoelectric Point (pI)

23.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EBP	PF05241	39 - 138	5e-11	EXPERA (EXPanded EBP superfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05210 AT2G32380
fragaria_vesca	FvH4_6g43330 FvH4_6g43370 FvH4_6g43380 FvH4_7g06210
malus_domestica	MD09G1107600.v1.1 MD17G1095200.v1.1 MD17G1095300.v1.1 MD17G1095500.v1.1 MD17G1095800.v1.1
prunus_persica	Prupe.3G218100_v2.0.a1 Prupe.3G218400_v2.0.a1 Prupe.3G218400_v2.0.a1
pyrus_communis	pycom09g02970 pycom17g09170 pycom17g09180 pycom17g09200 pycom17g09210
rosa_chinensis	RchiOBHm_Chr2g0159661 RchiOBHm_Chr2g0159681 RchiOBHm_Chr2g0159721
rosa_laevigata	RLG00000021171 RLG00000021173 RLG00000021174 RLG00000021176
rosa_multiflora	Rmu_sc0004966.1_g000004 Rmu_sc0011502.1_g000006 Rmu_sc0036321.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090280 Rroxscaffold_2G00090290 Rroxscaffold_2G00090310 Rroxscaffold_2G00090320 Rroxscaffold_2G00090340
rosa_rugosa	Rorug02G0477600 Rorug02G0477800 Rorug02G0478000
rosa_samantha	Rh2AG544500 Rh2AG544700 Rh2AG544800 Rh2BG557300 Rh2BG557600 Rh2CG527600 Rh2CG527800 Rh2CG527900 Rh2DG566400 Rh2DG566600 Rh2DG567100 Rh4CG047800
rosa_wichuraiana	Rw2G045030 Rw2G045050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	81
AccB1I	GGYRCC	1 cut(s)	64
AccI	GTMKAC	1 cut(s)	446
AccII	CGCG	1 cut(s)	302
AccIII	TCCGGA	1 cut(s)	109
AciI	CCGC	2 cut(s)	147, 433
AcoI	YGGCCR	1 cut(s)	411
AcyI	GRCGYC	1 cut(s)	65
AfaI	GTAC	3 cut(s)	128, 140, 275
AfiI	CCNNNNNNNGG	3 cut(s)	109, 394, 395
AgsI	TTSAA	4 cut(s)	154, 209, 382, 453
AloI	GAACNNNNNNTCC	2 cut(s)	201, 233
AluBI	AGCT	2 cut(s)	85, 340
AluI	AGCT	2 cut(s)	85, 340
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	2 cut(s)	200, 410
Aor13HI	TCCGGA	1 cut(s)	109
AoxI	GGCC	2 cut(s)	224, 411
ApeKI	GCWGC	1 cut(s)	82
AspLEI	GCGC	3 cut(s)	67, 82, 302
AsuHPI	GGTGA	1 cut(s)	304
BalI	TGGCCA	1 cut(s)	413
BanI	GGYRCC	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	4 cut(s)	49, 64, 112, 445
BceAI	ACGGC	1 cut(s)	78
BcoDI	GTCTC	2 cut(s)	200, 410
BfaI	CTAG	1 cut(s)	86
BfoI	RGCGCY	1 cut(s)	68
BisI	GCNGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	84
BmiI	GGNNCC	1 cut(s)	66
BmsI	GCATC	4 cut(s)	6, 16, 67, 368
BsaAI	YACGTR	1 cut(s)	422
BsaHI	GRCGYC	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	200
BsaWI	WCCGGW	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 394, 395
Bse1I	ACTGG	2 cut(s)	140, 220
BseAI	TCCGGA	1 cut(s)	109
BseGI	GGATG	3 cut(s)	82, 123, 258
BseLI	CCNNNNNNNGG	3 cut(s)	109, 394, 395
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	2 cut(s)	140, 220
BseXI	GCAGC	1 cut(s)	94
Bsh1236I	CGCG	1 cut(s)	302
BshFI	GGCC	2 cut(s)	226, 413
BshNI	GGYRCC	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	342
BsiSI	CCGG	1 cut(s)	110
BslI	CCNNNNNNNGG	3 cut(s)	109, 394, 395
BsmAI	GTCTC	2 cut(s)	200, 410
BsnI	GGCC	2 cut(s)	226, 413
Bso31I	GGTCTC	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp13I	TCCGGA	1 cut(s)	109
BspACI	CCGC	2 cut(s)	147, 433
BspANI	GGCC	2 cut(s)	226, 413
BspCNI	CTCAG	1 cut(s)	90
BspEI	TCCGGA	1 cut(s)	109
BspFNI	CGCG	1 cut(s)	302
BspLI	GGNNCC	1 cut(s)	66
BspT107I	GGYRCC	1 cut(s)	64
BspTNI	GGTCTC	1 cut(s)	200
BsrI	ACTGG	2 cut(s)	140, 220
BssNI	GRCGYC	1 cut(s)	65
BstACI	GRCGYC	1 cut(s)	65
BstBAI	YACGTR	1 cut(s)	422
BstDEI	CTNAG	1 cut(s)	98
BstF5I	GGATG	3 cut(s)	82, 123, 258
BstFNI	CGCG	1 cut(s)	302
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	3 cut(s)	67, 82, 302
BstMAI	GTCTC	2 cut(s)	200, 410
BstMWI	GCNNNNNNNGC	1 cut(s)	91
BstUI	CGCG	1 cut(s)	302
BstV1I	GCAGC	1 cut(s)	94
BstXI	CCANNNNNNTGG	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	226, 413
BtsCI	GGATG	3 cut(s)	82, 123, 258
BtsIMutI	CAGTG	1 cut(s)	227
CfoI	GCGC	3 cut(s)	67, 82, 302
CseI	GACGC	1 cut(s)	291
Csp6I	GTAC	3 cut(s)	127, 139, 274
CviJI	RGCY	7 cut(s)	85, 102, 178, 226, 260, 340, 413
CviKI_1	RGCY	7 cut(s)	85, 102, 178, 226, 260, 340, 413
CviQI	GTAC	3 cut(s)	127, 139, 274
DdeI	CTNAG	1 cut(s)	98
DinI	GGCGCC	1 cut(s)	66
EaeI	YGGCCR	1 cut(s)	411
EciI	GGCGGA	1 cut(s)	422
Ecl136II	GAGCTC	1 cut(s)	340
Eco24I	GRGCYC	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	200
Eco53kI	GAGCTC	1 cut(s)	340
EcoICRI	GAGCTC	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	342
EgeI	GGCGCC	1 cut(s)	66
EheI	GGCGCC	1 cut(s)	66
FaiI	YATR	6 cut(s)	32, 168, 249, 297, 344, 416
FauI	CCCGC	1 cut(s)	140
FblI	GTMKAC	1 cut(s)	446
Fnu4HI	GCNGC	1 cut(s)	83
FokI	GGATG	3 cut(s)	89, 130, 265
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	1 cut(s)	83
FspBI	CTAG	1 cut(s)	86
FspI	TGCGCA	1 cut(s)	81
GlaI	GCGC	3 cut(s)	66, 81, 301
GluI	GCNGC	1 cut(s)	83
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	2 cut(s)	226, 413
HapII	CCGG	1 cut(s)	110
HgaI	GACGC	1 cut(s)	291
HhaI	GCGC	3 cut(s)	67, 82, 302
Hin1I	GRCGYC	1 cut(s)	65
Hin6I	GCGC	3 cut(s)	65, 80, 300
HinP1I	GCGC	3 cut(s)	65, 80, 300
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	1 cut(s)	447
Hpy188I	TCNGA	3 cut(s)	15, 99, 364
Hpy188III	TCNNGA	2 cut(s)	52, 110
Hpy8I	GTNNAC	1 cut(s)	447
Hpy99I	CGWCG	2 cut(s)	64, 146
HpyCH4IV	ACGT	2 cut(s)	141, 421
HpyF10VI	GCNNNNNNNGC	1 cut(s)	91
HpyF3I	CTNAG	1 cut(s)	98
HpySE526I	ACGT	2 cut(s)	141, 421
Hsp92I	GRCGYC	1 cut(s)	65
HspAI	GCGC	3 cut(s)	65, 80, 300
KasI	GGCGCC	1 cut(s)	64
Kpn2I	TCCGGA	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	435
LpnPI	CCDG	5 cut(s)	121, 123, 233, 246, 336
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	4 cut(s)	6, 16, 67, 368
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	2 cut(s)	141, 421
MaeIII	GTNAC	2 cut(s)	322, 460
MboII	GAAGA	3 cut(s)	34, 37, 481
MhlI	GDGCHC	1 cut(s)	342
MlsI	TGGCCA	1 cut(s)	413
MluCI	AATT	1 cut(s)	21
MluNI	TGGCCA	1 cut(s)	413
Mly113I	GGCGCC	1 cut(s)	65
MnlI	CCTC	4 cut(s)	105, 113, 189, 237
Mox20I	TGGCCA	1 cut(s)	413
MroI	TCCGGA	1 cut(s)	109
MscI	TGGCCA	1 cut(s)	413
MslI	CAYNNNNRTG	2 cut(s)	53, 317
Msp20I	TGGCCA	1 cut(s)	413
MspI	CCGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	302
MwoI	GCNNNNNNNGC	1 cut(s)	91
NarI	GGCGCC	1 cut(s)	65
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	2 cut(s)	322, 460
NsbI	TGCGCA	1 cut(s)	81
PkrI	GCNGC	1 cut(s)	84
PluTI	GGCGCC	1 cut(s)	68
Ppu21I	YACGTR	1 cut(s)	422
Psp124BI	GAGCTC	1 cut(s)	342
PspN4I	GGNNCC	1 cut(s)	66
RsaI	GTAC	3 cut(s)	128, 140, 275
RsaNI	GTAC	3 cut(s)	127, 139, 274
RseI	CAYNNNNRTG	2 cut(s)	53, 317
SacI	GAGCTC	1 cut(s)	342
SatI	GCNGC	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	342
SetI	ASST	5 cut(s)	87, 144, 342, 424, 462
SfaNI	GCATC	4 cut(s)	6, 16, 67, 368
SfoI	GGCGCC	1 cut(s)	66
SmiMI	CAYNNNNRTG	2 cut(s)	53, 317
Sse9I	AATT	1 cut(s)	21
SsiI	CCGC	2 cut(s)	147, 433
SspDI	GGCGCC	1 cut(s)	64
SspMI	CTAG	1 cut(s)	86
SstI	GAGCTC	1 cut(s)	342
TaiI	ACGT	2 cut(s)	144, 424
TasI	AATT	1 cut(s)	21
TatI	WGTACW	1 cut(s)	126
TscAI	CASTG	1 cut(s)	227
TseFI	GTSAC	2 cut(s)	322, 460
TseI	GCWGC	1 cut(s)	82
Tsp45I	GTSAC	2 cut(s)	322, 460
TspDTI	ATGAA	1 cut(s)	37
TspRI	CASTG	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	446
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.