Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001495

Physical Location & Seq

Genomic Coordinates Reverse (-)

6951322 .. 6957836

Gene Structure 6515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g09200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGGTGCTTTGGCAAAGCTTGTGGACGCCACACTGTTCGTCTTCTTCGTCGTGATCGCGGTGGCAGCACCGTTAATCGACGCGCAGATATGTCTGCCCGAGAGCCTCTTCCCGGACGCATTGATTGATCTCAAGAACTGGTACGCGCGCAGCTATGGCGATTATCTGATGACCCAGAAGCCTTATTTCGTCGTTGGGATCATTTGGTTCGAGCTGCTCTTTCAATGGCCTCTCGCGCTTGCCAACTTGTACGGAATATTGGCCGCCAAGTCTTGGTTCCACACCACCTGCTTGATCTATGGCGTTTCGGTCTTCACTTCCATGGTTACTATATTATCAGAACTGCTTCAGTCCGGCAAGGCTTCAGATGACCTCCTATATATGTATTTCCCTTTTCTAGGCTTAGGCATTTTGGCCACAGTACGAGGGCTGCTGCTGCCATCCAACACAACTACTTCGAGGATTGGCAAGAGACCTACATTGGGTAGGAAAAAGAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2781

Protein Analysis

168

Amino Acids

18.57

Weight (kDa)

9.1

Isoelectric Point (pI)

32.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EBP	PF05241	42 - 140	1.5e-13	EXPERA (EXPanded EBP superfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05210 AT2G32380
fragaria_vesca	FvH4_6g43330 FvH4_6g43370 FvH4_6g43380 FvH4_7g06210
malus_domestica	MD09G1107600.v1.1 MD17G1095200.v1.1 MD17G1095300.v1.1 MD17G1095500.v1.1 MD17G1095800.v1.1
prunus_persica	Prupe.3G218100_v2.0.a1 Prupe.3G218400_v2.0.a1 Prupe.3G218400_v2.0.a1
pyrus_communis	pycom09g02970 pycom17g09170 pycom17g09180 pycom17g09200 pycom17g09210
rosa_chinensis	RchiOBHm_Chr2g0159661 RchiOBHm_Chr2g0159681 RchiOBHm_Chr2g0159721
rosa_laevigata	RLG00000021171 RLG00000021173 RLG00000021174 RLG00000021176
rosa_multiflora	Rmu_sc0004966.1_g000004 Rmu_sc0011502.1_g000006 Rmu_sc0036321.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090280 Rroxscaffold_2G00090290 Rroxscaffold_2G00090310 Rroxscaffold_2G00090320 Rroxscaffold_2G00090340
rosa_rugosa	Rorug02G0477600 Rorug02G0477800 Rorug02G0478000
rosa_samantha	Rh2AG544500 Rh2AG544700 Rh2AG544800 Rh2BG557300 Rh2BG557600 Rh2CG527600 Rh2CG527800 Rh2CG527900 Rh2DG566400 Rh2DG566600 Rh2DG567100 Rh4CG047800
rosa_wichuraiana	Rw2G045030 Rw2G045050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	296
Acc36I	ACCTGC	1 cut(s)	296
AccB7I	CCANNNNNTGG	1 cut(s)	273
AccII	CGCG	5 cut(s)	59, 83, 146, 148, 236
AciI	CCGC	2 cut(s)	59, 264
AclWI	GGATC	1 cut(s)	206
AcoI	YGGCCR	2 cut(s)	261, 414
AcuI	CTGAAG	2 cut(s)	332, 348
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	3 cut(s)	143, 251, 423
AfiI	CCNNNNNNNGG	4 cut(s)	112, 273, 398, 482
AgsI	TTSAA	1 cut(s)	224
AjuI	GAANNNNNNNTTGG	2 cut(s)	260, 292
AluBI	AGCT	3 cut(s)	19, 153, 214
AluI	AGCT	3 cut(s)	19, 153, 214
Alw26I	GTCTC	1 cut(s)	466
AlwI	GGATC	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	3 cut(s)	227, 261, 414
ApeKI	GCWGC	6 cut(s)	65, 150, 214, 430, 433, 436
Asp700I	GAANNNNTTC	1 cut(s)	345
AspLEI	GCGC	4 cut(s)	85, 148, 150, 238
AsuC2I	CCSGG	1 cut(s)	113
AvaI	CYCGRG	1 cut(s)	98
BalI	TGGCCA	1 cut(s)	416
BbsI	GAAGAC	2 cut(s)	34, 304
BbvI	GCAGC	6 cut(s)	77, 162, 201, 417, 420, 423
BccI	CCATC	1 cut(s)	448
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	466
BfaI	CTAG	1 cut(s)	398
BfuAI	ACCTGC	1 cut(s)	296
BisI	GCNGC	7 cut(s)	66, 151, 215, 264, 431, 434, 437
BlsI	GCNGC	7 cut(s)	67, 152, 216, 265, 432, 435, 438
Bme1390I	CCNGG	1 cut(s)	113
BmeT110I	CYCGRG	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	113
BpiI	GAAGAC	2 cut(s)	34, 304
Bpu10I	CCTNAGC	1 cut(s)	403
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	466
BsaJI	CCNNGG	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	4 cut(s)	112, 273, 398, 482
Bse1I	ACTGG	1 cut(s)	143
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	1 cut(s)	440
BseLI	CCNNNNNNNGG	4 cut(s)	112, 273, 398, 482
BseNI	ACTGG	1 cut(s)	143
BsePI	GCGCGC	1 cut(s)	146
BseXI	GCAGC	6 cut(s)	77, 162, 201, 417, 420, 423
Bsh1236I	CGCG	5 cut(s)	59, 83, 146, 148, 236
BshFI	GGCC	3 cut(s)	229, 263, 416
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	2 cut(s)	113, 354
BslI	CCNNNNNNNGG	4 cut(s)	112, 273, 398, 482
BsmAI	GTCTC	1 cut(s)	466
BsnI	GGCC	3 cut(s)	229, 263, 416
Bso31I	GGTCTC	1 cut(s)	466
BsoBI	CYCGRG	1 cut(s)	98
Bsp143I	GATC	4 cut(s)	54, 127, 198, 294
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	2 cut(s)	59, 264
BspANI	GGCC	3 cut(s)	229, 263, 416
BspFNI	CGCG	5 cut(s)	59, 83, 146, 148, 236
BspLI	GGNNCC	1 cut(s)	278
BspMI	ACCTGC	1 cut(s)	296
BspPI	GGATC	1 cut(s)	206
BspTNI	GGTCTC	1 cut(s)	466
BsrI	ACTGG	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	321
BssHII	GCGCGC	1 cut(s)	146
BssMI	GATC	4 cut(s)	54, 127, 198, 294
BssNI	GRCGYC	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	321
Bst4CI	ACNGT	3 cut(s)	36, 72, 421
Bst6I	CTCTTC	1 cut(s)	113
BstACI	GRCGYC	1 cut(s)	27
BstC8I	GCNNGC	2 cut(s)	148, 240
BstDEI	CTNAG	1 cut(s)	403
BstDSI	CCRYGG	1 cut(s)	321
BstENI	CCTNNNNNAGG	1 cut(s)	396
BstF5I	GGATG	1 cut(s)	440
BstFNI	CGCG	5 cut(s)	59, 83, 146, 148, 236
BstHHI	GCGC	4 cut(s)	85, 148, 150, 238
BstKTI	GATC	4 cut(s)	57, 130, 201, 297
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	4 cut(s)	54, 127, 198, 294
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 156, 235, 436
BstSCI	CCNGG	1 cut(s)	111
BstUI	CGCG	5 cut(s)	59, 83, 146, 148, 236
BstV1I	GCAGC	6 cut(s)	77, 162, 201, 417, 420, 423
BstV2I	GAAGAC	2 cut(s)	34, 304
BsuRI	GGCC	3 cut(s)	229, 263, 416
BtgI	CCRYGG	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	440
BtsIMutI	CAGTG	1 cut(s)	32
BveI	ACCTGC	1 cut(s)	296
Cac8I	GCNNGC	2 cut(s)	148, 240
CfoI	GCGC	4 cut(s)	85, 148, 150, 238
CseI	GACGC	3 cut(s)	35, 89, 125
Csp6I	GTAC	3 cut(s)	142, 250, 422
CspCI	CAANNNNNGTGG	1 cut(s)	38
CviAII	CATG	1 cut(s)	322
CviQI	GTAC	3 cut(s)	142, 250, 422
DdeI	CTNAG	1 cut(s)	403
DpnI	GATC	4 cut(s)	56, 129, 200, 296
DpnII	GATC	4 cut(s)	54, 127, 198, 294
EaeI	YGGCCR	2 cut(s)	261, 414
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco130I	CCWWGG	1 cut(s)	321
Eco31I	GGTCTC	1 cut(s)	466
Eco57I	CTGAAG	2 cut(s)	332, 348
Eco88I	CYCGRG	1 cut(s)	98
EcoNI	CCTNNNNNAGG	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	1 cut(s)	325
FaiI	YATR	8 cut(s)	91, 156, 300, 323, 332, 379, 381, 383
FatI	CATG	1 cut(s)	321
Fnu4HI	GCNGC	7 cut(s)	66, 151, 215, 264, 431, 434, 437
FokI	GGATG	1 cut(s)	427
Fsp4HI	GCNGC	7 cut(s)	66, 151, 215, 264, 431, 434, 437
FspBI	CTAG	1 cut(s)	398
GlaI	GCGC	4 cut(s)	84, 147, 149, 237
GluI	GCNGC	7 cut(s)	66, 151, 215, 264, 431, 434, 437
HaeIII	GGCC	3 cut(s)	229, 263, 416
HapII	CCGG	2 cut(s)	113, 354
HgaI	GACGC	3 cut(s)	35, 89, 125
HhaI	GCGC	4 cut(s)	85, 148, 150, 238
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	1 cut(s)	325
Hin6I	GCGC	4 cut(s)	83, 146, 148, 236
HinP1I	GCGC	4 cut(s)	83, 146, 148, 236
HindIII	AAGCTT	1 cut(s)	17
HpaII	CCGG	2 cut(s)	113, 354
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	3 cut(s)	168, 340, 367
Hpy188III	TCNNGA	2 cut(s)	52, 133
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	3 cut(s)	53, 83, 194
HpyAV	CCTTC	1 cut(s)	490
HpyCH4III	ACNGT	3 cut(s)	36, 72, 421
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 156, 235, 436
HpyF3I	CTNAG	1 cut(s)	403
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	325
HspAI	GCGC	4 cut(s)	83, 146, 148, 236
Kzo9I	GATC	4 cut(s)	54, 127, 198, 294
LpnPI	CCDG	5 cut(s)	124, 126, 188, 301, 367
Lsp1109I	GCAGC	6 cut(s)	77, 162, 201, 417, 420, 423
MaeI	CTAG	1 cut(s)	398
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	4 cut(s)	56, 129, 200, 296
MboI	GATC	4 cut(s)	54, 127, 198, 294
MboII	GAAGA	4 cut(s)	34, 37, 100, 304
MlsI	TGGCCA	1 cut(s)	416
MluNI	TGGCCA	1 cut(s)	416
MmeI	TCCRAC	1 cut(s)	468
MnlI	CCTC	5 cut(s)	116, 240, 383, 419, 453
Mox20I	TGGCCA	1 cut(s)	416
MroXI	GAANNNNTTC	1 cut(s)	345
MscI	TGGCCA	1 cut(s)	416
MseI	TTAA	1 cut(s)	74
MslI	CAYNNNNRTG	1 cut(s)	320
Msp20I	TGGCCA	1 cut(s)	416
MspI	CCGG	2 cut(s)	113, 354
MspR9I	CCNGG	1 cut(s)	113
MvnI	CGCG	5 cut(s)	59, 83, 146, 148, 236
MwoI	GCNNNNNNNGC	4 cut(s)	65, 156, 235, 436
NciI	CCSGG	1 cut(s)	113
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	4 cut(s)	54, 127, 198, 294
NlaIII	CATG	1 cut(s)	325
NlaIV	GGNNCC	1 cut(s)	278
PaqCI	CACCTGC	1 cut(s)	296
PauI	GCGCGC	1 cut(s)	146
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	345
PflMI	CCANNNNNTGG	1 cut(s)	273
PfoI	TCCNGGA	1 cut(s)	111
PkrI	GCNGC	7 cut(s)	67, 152, 216, 265, 432, 435, 438
PspN4I	GGNNCC	1 cut(s)	278
PteI	GCGCGC	1 cut(s)	146
RsaI	GTAC	3 cut(s)	143, 251, 423
RsaNI	GTAC	3 cut(s)	142, 250, 422
RseI	CAYNNNNRTG	1 cut(s)	320
SaqAI	TTAA	1 cut(s)	74
SatI	GCNGC	7 cut(s)	66, 151, 215, 264, 431, 434, 437
Sau3AI	GATC	4 cut(s)	54, 127, 198, 294
ScrFI	CCNGG	1 cut(s)	113
SetI	ASST	6 cut(s)	21, 155, 216, 290, 375, 478
SmiMI	CAYNNNNRTG	1 cut(s)	320
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
SsiI	CCGC	2 cut(s)	59, 264
SspI	AATATT	1 cut(s)	258
SspMI	CTAG	1 cut(s)	398
StyD4I	CCNGG	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	3 cut(s)	36, 72, 421
TaqI	TCGA	3 cut(s)	78, 210, 458
TaqII	GACCGA	1 cut(s)	298
TauI	GCSGC	1 cut(s)	266
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TscAI	CASTG	1 cut(s)	39
TseI	GCWGC	6 cut(s)	65, 150, 214, 430, 433, 436
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	1 cut(s)	39
Van91I	CCANNNNNTGG	1 cut(s)	273
XagI	CCTNNNNNAGG	1 cut(s)	396
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.