Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001495

Physical Location & Seq

Genomic Coordinates Forward (+)

72592677 .. 72593567

Gene Structure 891 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021173

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCAGTTTCGCCTGTGGTGCACGCGCAGTTTGTTCTGCCTCTGAGCTTCTTCCCGGAGTGGATGGTGGAGCAGAAGAACTGGTACATGCGCGAGTTCGATGACTACTTCTATGTCGAGAAGCCTGATTTCTTAATTGGTCTGGTTTTGGTTGAGCTTGTGTTCCAGTGGCCTCTCGTCCTTGCCATATCGTACGGGATGTTGGCTTCCATGAATTGGTACAGGACCCTTGCTTGGTTCATGGTGACTGCATTAGCGGGACTCATTGGATCAGACAAGGCATCTTGTAAGGTCTTAACATTGTACTACACTTTTTTGGGGTTCGCTGTCCTGACCATAGTTCGTGGGTTGATGCCACCATCAACTACTTCAAACAATGACAAAGCAAGAAGAAAAAGGATTGGCGTTTCAAAGAAAATGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2781

Protein Analysis

142

Amino Acids

16.25

Weight (kDa)

9.27

Isoelectric Point (pI)

35.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05210 AT2G32380
fragaria_vesca	FvH4_6g43330 FvH4_6g43370 FvH4_6g43380 FvH4_7g06210
malus_domestica	MD09G1107600.v1.1 MD17G1095200.v1.1 MD17G1095300.v1.1 MD17G1095500.v1.1 MD17G1095800.v1.1
prunus_persica	Prupe.3G218100_v2.0.a1 Prupe.3G218400_v2.0.a1 Prupe.3G218400_v2.0.a1
pyrus_communis	pycom09g02970 pycom17g09170 pycom17g09180 pycom17g09200 pycom17g09210
rosa_chinensis	RchiOBHm_Chr2g0159661 RchiOBHm_Chr2g0159681 RchiOBHm_Chr2g0159721
rosa_laevigata	RLG00000021171 RLG00000021173 RLG00000021174 RLG00000021176
rosa_multiflora	Rmu_sc0004966.1_g000004 Rmu_sc0011502.1_g000006 Rmu_sc0036321.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090280 Rroxscaffold_2G00090290 Rroxscaffold_2G00090310 Rroxscaffold_2G00090320 Rroxscaffold_2G00090340
rosa_rugosa	Rorug02G0477600 Rorug02G0477800 Rorug02G0478000
rosa_samantha	Rh2AG544500 Rh2AG544700 Rh2AG544800 Rh2BG557300 Rh2BG557600 Rh2CG527600 Rh2CG527800 Rh2CG527900 Rh2DG566400 Rh2DG566600 Rh2DG567100 Rh4CG047800
rosa_wichuraiana	Rw2G045030 Rw2G045050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	216
AccII	CGCG	2 cut(s)	26, 93
AciI	CCGC	1 cut(s)	257
AclWI	GGATC	1 cut(s)	277
AfaI	GTAC	4 cut(s)	86, 194, 221, 305
AfiI	CCNNNNNNNGG	2 cut(s)	216, 234
AgsI	TTSAA	2 cut(s)	372, 411
AluBI	AGCT	2 cut(s)	48, 157
AluI	AGCT	2 cut(s)	48, 157
Alw21I	GWGCWC	1 cut(s)	24
Alw44I	GTGCAC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	277
AoxI	GGCC	1 cut(s)	170
ApaLI	GTGCAC	1 cut(s)	20
AspLEI	GCGC	2 cut(s)	28, 93
AspS9I	GGNCC	1 cut(s)	225
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	256
AvaII	GGWCC	1 cut(s)	225
BaeGI	GKGCMC	1 cut(s)	24
BarI	GAAGNNNNNNTAC	2 cut(s)	68, 100
Bbv12I	GWGCWC	1 cut(s)	24
BccI	CCATC	2 cut(s)	58, 367
BcnI	CCSGG	1 cut(s)	56
BfaI	CTAG	1 cut(s)	424
Bme1390I	CCNGG	1 cut(s)	56
Bme18I	GGWCC	1 cut(s)	225
BmgT120I	GGNCC	1 cut(s)	225
BmiI	GGNNCC	1 cut(s)	227
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	2 cut(s)	290, 342
BpuMI	CCSGG	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 234
Bse1I	ACTGG	2 cut(s)	86, 166
BseGI	GGATG	2 cut(s)	69, 204
BseLI	CCNNNNNNNGG	2 cut(s)	216, 234
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	2 cut(s)	86, 166
BseSI	GKGCMC	1 cut(s)	24
Bsh1236I	CGCG	2 cut(s)	26, 93
BshFI	GGCC	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	56
BsiWI	CGTACG	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	273
BslI	CCNNNNNNNGG	2 cut(s)	216, 234
BsmFI	GGGAC	1 cut(s)	273
BsnI	GGCC	1 cut(s)	172
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	269, 420
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	1 cut(s)	172
BspCNI	CTCAG	1 cut(s)	36
BspFNI	CGCG	2 cut(s)	26, 93
BspLI	GGNNCC	1 cut(s)	227
BspPI	GGATC	1 cut(s)	277
BsrI	ACTGG	2 cut(s)	86, 166
BssMI	GATC	2 cut(s)	269, 420
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	44
BstF5I	GGATG	2 cut(s)	69, 204
BstFNI	CGCG	2 cut(s)	26, 93
BstHHI	GCGC	2 cut(s)	28, 93
BstKTI	GATC	2 cut(s)	272, 423
BstMBI	GATC	2 cut(s)	269, 420
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstNSI	RCATGY	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	54
BstSLI	GKGCMC	1 cut(s)	24
BstUI	CGCG	2 cut(s)	26, 93
BsuRI	GGCC	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	69, 204
BtsIMutI	CAGTG	1 cut(s)	173
Cac8I	GCNNGC	1 cut(s)	24
CfoI	GCGC	2 cut(s)	28, 93
Cfr13I	GGNCC	1 cut(s)	225
Csp6I	GTAC	4 cut(s)	85, 193, 220, 304
CviAII	CATG	3 cut(s)	88, 211, 241
CviJI	RGCY	5 cut(s)	48, 124, 157, 172, 206
CviKI_1	RGCY	5 cut(s)	48, 124, 157, 172, 206
CviQI	GTAC	4 cut(s)	85, 193, 220, 304
DdeI	CTNAG	1 cut(s)	44
DpnI	GATC	2 cut(s)	271, 422
DpnII	GATC	2 cut(s)	269, 420
Eco47I	GGWCC	1 cut(s)	225
EcoO109I	RGGNCCY	1 cut(s)	225
FaeI	CATG	3 cut(s)	91, 214, 244
FaiI	YATR	6 cut(s)	89, 114, 188, 212, 242, 338
FaqI	GGGAC	1 cut(s)	273
FatI	CATG	3 cut(s)	87, 210, 240
FauI	CCCGC	1 cut(s)	250
FokI	GGATG	2 cut(s)	76, 211
FspBI	CTAG	1 cut(s)	424
GlaI	GCGC	2 cut(s)	27, 92
HaeIII	GGCC	1 cut(s)	172
HapII	CCGG	1 cut(s)	56
HhaI	GCGC	2 cut(s)	28, 93
Hin1II	CATG	3 cut(s)	91, 214, 244
Hin6I	GCGC	2 cut(s)	26, 91
HinP1I	GCGC	2 cut(s)	26, 91
HinfI	GANTC	1 cut(s)	261
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	2 cut(s)	45, 274
Hpy188III	TCNNGA	2 cut(s)	118, 331
Hpy8I	GTNNAC	1 cut(s)	22
HpyCH4V	TGCA	2 cut(s)	22, 251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HpyF3I	CTNAG	1 cut(s)	44
Hsp92II	CATG	3 cut(s)	91, 214, 244
HspAI	GCGC	2 cut(s)	26, 91
Kzo9I	GATC	2 cut(s)	269, 420
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	8 cut(s)	27, 67, 69, 128, 138, 179, 208, 344
LweI	GCATC	2 cut(s)	290, 342
MaeI	CTAG	1 cut(s)	424
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	2 cut(s)	271, 422
MboI	GATC	2 cut(s)	269, 420
MboII	GAAGA	3 cut(s)	43, 88, 402
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	2 cut(s)	135, 214
MlyI	GAGTC	1 cut(s)	255
MnlI	CCTC	2 cut(s)	51, 183
MseI	TTAA	2 cut(s)	134, 296
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	56
MvnI	CGCG	2 cut(s)	26, 93
MwoI	GCNNNNNNNGC	1 cut(s)	19
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	2 cut(s)	269, 420
NlaIII	CATG	3 cut(s)	91, 214, 244
NlaIV	GGNNCC	1 cut(s)	227
NmuCI	GTSAC	1 cut(s)	244
NspI	RCATGY	1 cut(s)	91
Pfl23II	CGTACG	1 cut(s)	192
PflMI	CCANNNNNTGG	1 cut(s)	216
PfoI	TCCNGGA	1 cut(s)	54
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
PpuMI	RGGWCCY	1 cut(s)	225
Psp5II	RGGWCCY	1 cut(s)	225
PspLI	CGTACG	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	225
PspPPI	RGGWCCY	1 cut(s)	225
RsaI	GTAC	4 cut(s)	86, 194, 221, 305
RsaNI	GTAC	4 cut(s)	85, 193, 220, 304
SaqAI	TTAA	2 cut(s)	134, 296
Sau3AI	GATC	2 cut(s)	269, 420
Sau96I	GGNCC	1 cut(s)	225
SchI	GAGTC	1 cut(s)	255
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	3 cut(s)	50, 159, 294
SfaNI	GCATC	2 cut(s)	290, 342
SinI	GGWCC	1 cut(s)	225
Sse9I	AATT	2 cut(s)	135, 214
SsiI	CCGC	1 cut(s)	257
SspMI	CTAG	1 cut(s)	424
StyD4I	CCNGG	1 cut(s)	54
TaqI	TCGA	2 cut(s)	99, 117
TasI	AATT	2 cut(s)	135, 214
TatI	WGTACW	1 cut(s)	303
Tru1I	TTAA	2 cut(s)	134, 296
Tru9I	TTAA	2 cut(s)	134, 296
TscAI	CASTG	1 cut(s)	173
TseFI	GTSAC	1 cut(s)	244
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	2 cut(s)	227, 229
TspRI	CASTG	1 cut(s)	173
Van91I	CCANNNNNTGG	1 cut(s)	216
VneI	GTGCAC	1 cut(s)	20
VpaK11BI	GGWCC	1 cut(s)	225
XceI	RCATGY	1 cut(s)	91
XspI	CTAG	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.