Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001495

Physical Location & Seq

Genomic Coordinates Forward (+)

21994546 .. 21997039

Gene Structure 2494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G218400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGGTGCTTTGGTGAAGCTTGTTGACGCCACACTCTTCGTCTTCTTCTTCGTAATTGCGCTTGCAGCGCCCTTAATCGACGCGCAGACATGCCTGCCTCAGAGCCTCTTCCCAAACGTGTTGGTTCAGCTCAAGAGCTGGTACGCGCGCCAATATGGCGATTATCTCGTGACCCAGAAGCCCCATTTCTTTGTTGGGATCGTTTGGCTCGAGCTGCTCTTTCAGTGGCCTCTTTCAATTGCCAACCTGTACGGAATTTTAGCTGCCAAGTCTTGGTTCAACACCACCTGCTTGATCTATGGCGTTTCTGTGTTCACTTCCATGGTTACTATATTATCAGAACTGGTTCAGTCCGGCAAGGCTTCTGATAAGCTGTTGTATATGTACTTCCCTTTTCTGGGGTTAGGTGTTTTGGCCATACTGCGTGGGCTGCTGCCACCATCCAGCACGACCAGTTCGGGGATTGGCAAGAGACCTACATTGGGTAGGAAAAAGAAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2781

Protein Analysis

168

Amino Acids

18.47

Weight (kDa)

9.66

Isoelectric Point (pI)

33.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05210 AT2G32380
fragaria_vesca	FvH4_6g43330 FvH4_6g43370 FvH4_6g43380 FvH4_7g06210
malus_domestica	MD09G1107600.v1.1 MD17G1095200.v1.1 MD17G1095300.v1.1 MD17G1095500.v1.1 MD17G1095800.v1.1
prunus_persica	Prupe.3G218100_v2.0.a1 Prupe.3G218400_v2.0.a1 Prupe.3G218400_v2.0.a1
pyrus_communis	pycom09g02970 pycom17g09170 pycom17g09180 pycom17g09200 pycom17g09210
rosa_chinensis	RchiOBHm_Chr2g0159661 RchiOBHm_Chr2g0159681 RchiOBHm_Chr2g0159721
rosa_laevigata	RLG00000021171 RLG00000021173 RLG00000021174 RLG00000021176
rosa_multiflora	Rmu_sc0004966.1_g000004 Rmu_sc0011502.1_g000006 Rmu_sc0036321.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090280 Rroxscaffold_2G00090290 Rroxscaffold_2G00090310 Rroxscaffold_2G00090320 Rroxscaffold_2G00090340
rosa_rugosa	Rorug02G0477600 Rorug02G0477800 Rorug02G0478000
rosa_samantha	Rh2AG544500 Rh2AG544700 Rh2AG544800 Rh2BG557300 Rh2BG557600 Rh2CG527600 Rh2CG527800 Rh2CG527900 Rh2DG566400 Rh2DG566600 Rh2DG567100 Rh4CG047800
rosa_wichuraiana	Rw2G045030 Rw2G045050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	296
Acc36I	ACCTGC	1 cut(s)	296
AccB7I	CCANNNNNTGG	1 cut(s)	273
AccII	CGCG	3 cut(s)	83, 146, 148
AclWI	GGATC	1 cut(s)	206
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	1 cut(s)	255
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	3 cut(s)	143, 251, 386
AfiI	CCNNNNNNNGG	5 cut(s)	273, 397, 398, 459, 482
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	2 cut(s)	237, 280
AjuI	GAANNNNNNNTTGG	2 cut(s)	260, 292
AluBI	AGCT	6 cut(s)	19, 130, 138, 214, 263, 373
AluI	AGCT	6 cut(s)	19, 130, 138, 214, 263, 373
Alw26I	GTCTC	1 cut(s)	466
AlwI	GGATC	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	2 cut(s)	227, 414
ApeKI	GCWGC	5 cut(s)	65, 214, 263, 430, 433
ApoI	RAATTY	1 cut(s)	255
Asp700I	GAANNNNTTC	1 cut(s)	345
AspLEI	GCGC	5 cut(s)	61, 70, 85, 148, 150
AsuHPI	GGTGA	1 cut(s)	25
AvaI	CYCGRG	1 cut(s)	209
BalI	TGGCCA	1 cut(s)	416
BarI	GAAGNNNNNNTAC	2 cut(s)	371, 403
BauI	CACGAG	1 cut(s)	167
BbsI	GAAGAC	1 cut(s)	34
BbvI	GCAGC	5 cut(s)	77, 201, 250, 417, 420
BccI	CCATC	1 cut(s)	448
BcoDI	GTCTC	1 cut(s)	466
BfoI	RGCGCY	1 cut(s)	71
BfuAI	ACCTGC	1 cut(s)	296
BglI	GCCNNNNNGGC	1 cut(s)	156
BisI	GCNGC	5 cut(s)	66, 215, 264, 431, 434
BlsI	GCNGC	5 cut(s)	67, 216, 265, 432, 435
BmeT110I	CYCGRG	1 cut(s)	209
BpiI	GAAGAC	1 cut(s)	34
BpuEI	CTTGAG	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	466
BsaJI	CCNNGG	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	5 cut(s)	273, 397, 398, 459, 482
Bse1I	ACTGG	2 cut(s)	348, 453
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	1 cut(s)	440
BseLI	CCNNNNNNNGG	5 cut(s)	273, 397, 398, 459, 482
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	2 cut(s)	348, 453
BsePI	GCGCGC	1 cut(s)	146
BseXI	GCAGC	5 cut(s)	77, 201, 250, 417, 420
Bsh1236I	CGCG	3 cut(s)	83, 146, 148
BshFI	GGCC	2 cut(s)	229, 416
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	354
BslI	CCNNNNNNNGG	5 cut(s)	273, 397, 398, 459, 482
BsmAI	GTCTC	1 cut(s)	466
BsnI	GGCC	2 cut(s)	229, 416
Bso31I	GGTCTC	1 cut(s)	466
BsoBI	CYCGRG	1 cut(s)	209
Bsp143I	GATC	2 cut(s)	198, 294
Bsp19I	CCATGG	1 cut(s)	321
BspANI	GGCC	2 cut(s)	229, 416
BspCNI	CTCAG	1 cut(s)	112
BspFNI	CGCG	3 cut(s)	83, 146, 148
BspMI	ACCTGC	1 cut(s)	296
BspPI	GGATC	1 cut(s)	206
BspTNI	GGTCTC	1 cut(s)	466
BsrI	ACTGG	2 cut(s)	348, 453
BssECI	CCNNGG	1 cut(s)	321
BssHII	GCGCGC	1 cut(s)	146
BssMI	GATC	2 cut(s)	198, 294
BssNI	GRCGYC	1 cut(s)	27
BssSI	CACGAG	1 cut(s)	167
BssT1I	CCWWGG	1 cut(s)	321
Bst2BI	CACGAG	1 cut(s)	167
Bst6I	CTCTTC	2 cut(s)	41, 113
BstACI	GRCGYC	1 cut(s)	27
BstC8I	GCNNGC	3 cut(s)	63, 95, 148
BstDEI	CTNAG	1 cut(s)	99
BstDSI	CCRYGG	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	440
BstFNI	CGCG	3 cut(s)	83, 146, 148
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	5 cut(s)	61, 70, 85, 148, 150
BstKTI	GATC	2 cut(s)	201, 297
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	2 cut(s)	198, 294
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 67, 156, 214, 430
BstNSI	RCATGY	1 cut(s)	93
BstUI	CGCG	3 cut(s)	83, 146, 148
BstV1I	GCAGC	5 cut(s)	77, 201, 250, 417, 420
BstV2I	GAAGAC	1 cut(s)	34
BsuRI	GGCC	2 cut(s)	229, 416
BtgI	CCRYGG	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	440
BtsIMutI	CAGTG	1 cut(s)	230
BveI	ACCTGC	1 cut(s)	296
Cac8I	GCNNGC	3 cut(s)	63, 95, 148
CfoI	GCGC	5 cut(s)	61, 70, 85, 148, 150
CseI	GACGC	2 cut(s)	35, 89
Csp6I	GTAC	3 cut(s)	142, 250, 385
CviAII	CATG	2 cut(s)	90, 322
CviQI	GTAC	3 cut(s)	142, 250, 385
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	2 cut(s)	200, 296
DpnII	GATC	2 cut(s)	198, 294
EaeI	YGGCCR	1 cut(s)	414
Eam1104I	CTCTTC	2 cut(s)	41, 113
EarI	CTCTTC	2 cut(s)	41, 113
Eco130I	CCWWGG	1 cut(s)	321
Eco31I	GGTCTC	1 cut(s)	466
Eco88I	CYCGRG	1 cut(s)	209
EcoT14I	CCWWGG	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	2 cut(s)	93, 325
FaiI	YATR	8 cut(s)	91, 156, 300, 323, 332, 381, 383, 419
FatI	CATG	2 cut(s)	89, 321
Fnu4HI	GCNGC	5 cut(s)	66, 215, 264, 431, 434
FokI	GGATG	1 cut(s)	427
Fsp4HI	GCNGC	5 cut(s)	66, 215, 264, 431, 434
GlaI	GCGC	5 cut(s)	60, 69, 84, 147, 149
GluI	GCNGC	5 cut(s)	66, 215, 264, 431, 434
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	229, 416
HapII	CCGG	1 cut(s)	354
HgaI	GACGC	2 cut(s)	35, 89
HhaI	GCGC	5 cut(s)	61, 70, 85, 148, 150
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	2 cut(s)	93, 325
Hin6I	GCGC	5 cut(s)	59, 68, 83, 146, 148
HinP1I	GCGC	5 cut(s)	59, 68, 83, 146, 148
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HindIII	AAGCTT	1 cut(s)	17
HpaII	CCGG	1 cut(s)	354
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	2 cut(s)	25, 315
Hpy188I	TCNGA	3 cut(s)	102, 340, 367
Hpy188III	TCNNGA	2 cut(s)	133, 169
Hpy8I	GTNNAC	2 cut(s)	25, 315
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	1 cut(s)	490
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	1 cut(s)	65
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 67, 156, 214, 430
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	117
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	93, 325
HspAI	GCGC	5 cut(s)	59, 68, 83, 146, 148
Kzo9I	GATC	2 cut(s)	198, 294
Lsp1109I	GCAGC	5 cut(s)	77, 201, 250, 417, 420
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	2 cut(s)	169, 325
MalI	GATC	2 cut(s)	200, 296
MboI	GATC	2 cut(s)	198, 294
MboII	GAAGA	5 cut(s)	28, 34, 37, 40, 100
MfeI	CAATTG	1 cut(s)	237
MlsI	TGGCCA	1 cut(s)	416
MluCI	AATT	3 cut(s)	54, 237, 255
MluNI	TGGCCA	1 cut(s)	416
MnlI	CCTC	3 cut(s)	108, 116, 240
Mox20I	TGGCCA	1 cut(s)	416
MroXI	GAANNNNTTC	1 cut(s)	345
MscI	TGGCCA	1 cut(s)	416
MseI	TTAA	1 cut(s)	74
MslI	CAYNNNNRTG	1 cut(s)	320
Msp20I	TGGCCA	1 cut(s)	416
MspI	CCGG	1 cut(s)	354
MunI	CAATTG	1 cut(s)	237
MvnI	CGCG	3 cut(s)	83, 146, 148
MwoI	GCNNNNNNNGC	5 cut(s)	65, 67, 156, 214, 430
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	2 cut(s)	198, 294
NlaIII	CATG	2 cut(s)	93, 325
NmuCI	GTSAC	1 cut(s)	169
NspI	RCATGY	1 cut(s)	93
PaeR7I	CTCGAG	1 cut(s)	209
PaqCI	CACCTGC	1 cut(s)	296
PauI	GCGCGC	1 cut(s)	146
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PdmI	GAANNNNTTC	1 cut(s)	345
PflMI	CCANNNNNTGG	1 cut(s)	273
PkrI	GCNGC	5 cut(s)	67, 216, 265, 432, 435
PspXI	VCTCGAGB	1 cut(s)	209
PteI	GCGCGC	1 cut(s)	146
RsaI	GTAC	3 cut(s)	143, 251, 386
RsaNI	GTAC	3 cut(s)	142, 250, 385
RseI	CAYNNNNRTG	1 cut(s)	320
SaqAI	TTAA	1 cut(s)	74
SatI	GCNGC	5 cut(s)	66, 215, 264, 431, 434
Sau3AI	GATC	2 cut(s)	198, 294
Sfr274I	CTCGAG	1 cut(s)	209
SlaI	CTCGAG	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	320
SmlI	CTYRAG	2 cut(s)	131, 209
SmoI	CTYRAG	2 cut(s)	131, 209
Sse9I	AATT	3 cut(s)	54, 237, 255
StyI	CCWWGG	1 cut(s)	321
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	2 cut(s)	78, 210
TasI	AATT	3 cut(s)	54, 237, 255
TatI	WGTACW	1 cut(s)	384
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TscAI	CASTG	1 cut(s)	230
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	5 cut(s)	65, 214, 263, 430, 433
Tsp45I	GTSAC	1 cut(s)	169
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	1 cut(s)	230
Van91I	CCANNNNNTGG	1 cut(s)	273
XapI	RAATTY	1 cut(s)	255
XceI	RCATGY	1 cut(s)	93
XcmI	CCANNNNNNNNNTGG	1 cut(s)	191
XhoI	CTCGAG	1 cut(s)	209
XmnI	GAANNNNTTC	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.