Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001495

Physical Location & Seq

Genomic Coordinates Reverse (-)

12099496 .. 12101069

Gene Structure 1574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00090340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGGGTCTCTTGTTAAGCTCATTGATGCTTTGCTCTTCCTCTTGCTCCTCGCGGTCGCTTTTGAAACCCCATTGATTGAAGGGCAAGCATGTCTCCCTATCACCCTCTACCCAGATTTTCTCGTCGAACTCCGGAGCTGGTACGCAGGAGAAGTTGGTGACTACCTCATGACTGAGATGCCGGATTTCTACGTCGGGATCATATGGGTTGAGCTTCTTTTTCAATGGCCTCTGGTGCTTGTGAATCTTTATGGCATTTTAGCTGGGAAGCATTGGTTCAACACCACGTGCTTGAGTTATGGCATTTCTCTATTCACTGGCATGGTGCCTATATTTGCAGAACTCACAAGATCAGGAAGGGCTCCGGAAAAGTTATTGACGGTGTACTATTCGTTCTTGAGTGTGGGTGTTGTAGCCATACTTCGTGGATTGCTTCCCAACTCATCATCGATCAAGTTCTCTTCTGCAACCATTGGCAAGAGACCTGCCTCCGGTAGGAAGAAGAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2781

Protein Analysis

170

Amino Acids

18.9

Weight (kDa)

8.55

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EBP	PF05241	40 - 118	5.2e-11	EXPERA (EXPanded EBP superfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05210 AT2G32380
fragaria_vesca	FvH4_6g43330 FvH4_6g43370 FvH4_6g43380 FvH4_7g06210
malus_domestica	MD09G1107600.v1.1 MD17G1095200.v1.1 MD17G1095300.v1.1 MD17G1095500.v1.1 MD17G1095800.v1.1
prunus_persica	Prupe.3G218100_v2.0.a1 Prupe.3G218400_v2.0.a1 Prupe.3G218400_v2.0.a1
pyrus_communis	pycom09g02970 pycom17g09170 pycom17g09180 pycom17g09200 pycom17g09210
rosa_chinensis	RchiOBHm_Chr2g0159661 RchiOBHm_Chr2g0159681 RchiOBHm_Chr2g0159721
rosa_laevigata	RLG00000021171 RLG00000021173 RLG00000021174 RLG00000021176
rosa_multiflora	Rmu_sc0004966.1_g000004 Rmu_sc0011502.1_g000006 Rmu_sc0036321.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090280 Rroxscaffold_2G00090290 Rroxscaffold_2G00090310 Rroxscaffold_2G00090320 Rroxscaffold_2G00090340
rosa_rugosa	Rorug02G0477600 Rorug02G0477800 Rorug02G0478000
rosa_samantha	Rh2AG544500 Rh2AG544700 Rh2AG544800 Rh2BG557300 Rh2BG557600 Rh2CG527600 Rh2CG527800 Rh2CG527900 Rh2DG566400 Rh2DG566600 Rh2DG567100 Rh4CG047800
rosa_wichuraiana	Rw2G045030 Rw2G045050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	493
AccB1I	GGYRCC	1 cut(s)	325
AccII	CGCG	1 cut(s)	53
AccIII	TCCGGA	2 cut(s)	132, 364
AciI	CCGC	1 cut(s)	53
AclWI	GGATC	1 cut(s)	206
AcvI	CACGTG	1 cut(s)	288
AdeI	CACNNNGTG	1 cut(s)	288
AfaI	GTAC	2 cut(s)	143, 386
AfiI	CCNNNNNNNGG	2 cut(s)	491, 495
AgsI	TTSAA	4 cut(s)	65, 80, 224, 280
AluBI	AGCT	4 cut(s)	19, 138, 214, 263
AluI	AGCT	4 cut(s)	19, 138, 214, 263
Alw26I	GTCTC	3 cut(s)	12, 98, 475
AlwI	GGATC	1 cut(s)	206
Aor13HI	TCCGGA	2 cut(s)	132, 364
AoxI	GGCC	1 cut(s)	227
AsuHPI	GGTGA	2 cut(s)	94, 170
BanI	GGYRCC	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	364
BarI	GAAGNNNNNNTAC	2 cut(s)	405, 437
BbrPI	CACGTG	1 cut(s)	288
BcoDI	GTCTC	3 cut(s)	12, 98, 475
BfuAI	ACCTGC	1 cut(s)	493
BmiI	GGNNCC	2 cut(s)	327, 363
BmsI	GCATC	2 cut(s)	16, 168
BpuEI	CTTGAG	2 cut(s)	313, 418
Bsa29I	ATCGAT	1 cut(s)	449
BsaAI	YACGTR	1 cut(s)	288
BsaI	GGTCTC	2 cut(s)	12, 475
BsaWI	WCCGGW	3 cut(s)	132, 364, 491
Bsc4I	CCNNNNNNNGG	2 cut(s)	491, 495
Bse1I	ACTGG	1 cut(s)	322
BseAI	TCCGGA	2 cut(s)	132, 364
BseCI	ATCGAT	1 cut(s)	449
BseLI	CCNNNNNNNGG	2 cut(s)	491, 495
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	322
BseRI	GAGGAG	1 cut(s)	38
BseYI	CCCAGC	1 cut(s)	263
Bsh1236I	CGCG	1 cut(s)	53
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	229
BshNI	GGYRCC	1 cut(s)	325
BshVI	ATCGAT	1 cut(s)	449
BsiEI	CGRYCG	1 cut(s)	57
BsiSI	CCGG	4 cut(s)	133, 182, 365, 492
BslI	CCNNNNNNNGG	2 cut(s)	491, 495
BsmAI	GTCTC	3 cut(s)	12, 98, 475
BsnI	GGCC	1 cut(s)	229
Bso31I	GGTCTC	2 cut(s)	12, 475
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp13I	TCCGGA	2 cut(s)	132, 364
Bsp143I	GATC	3 cut(s)	198, 350, 450
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	1 cut(s)	166
BspDI	ATCGAT	1 cut(s)	449
BspEI	TCCGGA	2 cut(s)	132, 364
BspFNI	CGCG	1 cut(s)	53
BspHI	TCATGA	1 cut(s)	168
BspLI	GGNNCC	2 cut(s)	327, 363
BspMI	ACCTGC	1 cut(s)	493
BspPI	GGATC	1 cut(s)	206
BspQI	GCTCTTC	1 cut(s)	41
BspT107I	GGYRCC	1 cut(s)	325
BspTNI	GGTCTC	2 cut(s)	12, 475
BsrI	ACTGG	1 cut(s)	322
BssMI	GATC	3 cut(s)	198, 350, 450
Bst4CI	ACNGT	1 cut(s)	382
Bst6I	CTCTTC	3 cut(s)	41, 466, 497
BstBAI	YACGTR	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	174
BstENI	CCTNNNNNAGG	1 cut(s)	493
BstFNI	CGCG	1 cut(s)	53
BstKTI	GATC	3 cut(s)	201, 353, 453
BstMAI	GTCTC	3 cut(s)	12, 98, 475
BstMBI	GATC	3 cut(s)	198, 350, 450
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	1 cut(s)	235
BstNSI	RCATGY	1 cut(s)	93
BstUI	CGCG	1 cut(s)	53
Bsu15I	ATCGAT	1 cut(s)	449
BsuRI	GGCC	1 cut(s)	229
BsuTUI	ATCGAT	1 cut(s)	449
BtsIMutI	CAGTG	1 cut(s)	315
BveI	ACCTGC	1 cut(s)	493
Cac8I	GCNNGC	1 cut(s)	87
CciI	TCATGA	1 cut(s)	168
ClaI	ATCGAT	1 cut(s)	449
Csp6I	GTAC	2 cut(s)	142, 385
CviAII	CATG	3 cut(s)	90, 169, 322
CviJI	RGCY	7 cut(s)	19, 138, 214, 229, 263, 362, 416
CviKI_1	RGCY	7 cut(s)	19, 138, 214, 229, 263, 362, 416
CviQI	GTAC	2 cut(s)	142, 385
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	3 cut(s)	200, 352, 452
DpnII	GATC	3 cut(s)	198, 350, 450
DraIII	CACNNNGTG	1 cut(s)	288
Eam1104I	CTCTTC	3 cut(s)	41, 466, 497
EarI	CTCTTC	3 cut(s)	41, 466, 497
Eco24I	GRGCYC	1 cut(s)	364
Eco31I	GGTCTC	2 cut(s)	12, 475
Eco72I	CACGTG	1 cut(s)	288
EcoNI	CCTNNNNNAGG	1 cut(s)	493
EcoT38I	GRGCYC	1 cut(s)	364
FaeI	CATG	3 cut(s)	93, 172, 325
FaiI	YATR	9 cut(s)	91, 170, 203, 205, 252, 300, 323, 332, 419
FatI	CATG	3 cut(s)	89, 168, 321
FauNDI	CATATG	1 cut(s)	203
FriOI	GRGCYC	1 cut(s)	364
GsaI	CCCAGC	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	229
HapII	CCGG	4 cut(s)	133, 182, 365, 492
Hin1II	CATG	3 cut(s)	93, 172, 325
HinfI	GANTC	1 cut(s)	244
HpaII	CCGG	4 cut(s)	133, 182, 365, 492
HphI	GGTGA	2 cut(s)	94, 170
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188III	TCNNGA	6 cut(s)	133, 169, 196, 354, 365, 397
Hpy8I	GTNNAC	1 cut(s)	385
Hpy99I	CGWCG	2 cut(s)	128, 197
HpyAV	CCTTC	2 cut(s)	74, 351
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4IV	ACGT	2 cut(s)	192, 287
HpyCH4V	TGCA	2 cut(s)	338, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	235
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	2 cut(s)	192, 287
Hsp92II	CATG	3 cut(s)	93, 172, 325
Kpn2I	TCCGGA	2 cut(s)	132, 364
Kzo9I	GATC	3 cut(s)	198, 350, 450
LguI	GCTCTTC	1 cut(s)	41
LmnI	GCTCC	3 cut(s)	51, 135, 367
LweI	GCATC	2 cut(s)	16, 168
MaeII	ACGT	2 cut(s)	192, 287
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	3 cut(s)	200, 352, 452
MboI	GATC	3 cut(s)	198, 350, 450
MboII	GAAGA	3 cut(s)	28, 453, 511
MhlI	GDGCHC	1 cut(s)	364
MnlI	CCTC	6 cut(s)	50, 59, 116, 176, 240, 499
MroI	TCCGGA	2 cut(s)	132, 364
MseI	TTAA	1 cut(s)	15
MslI	CAYNNNNRTG	1 cut(s)	320
MspI	CCGG	4 cut(s)	133, 182, 365, 492
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	235
NdeI	CATATG	1 cut(s)	203
NdeII	GATC	3 cut(s)	198, 350, 450
NlaIII	CATG	3 cut(s)	93, 172, 325
NlaIV	GGNNCC	2 cut(s)	327, 363
NmuCI	GTSAC	1 cut(s)	158
NspI	RCATGY	1 cut(s)	93
PagI	TCATGA	1 cut(s)	168
PciSI	GCTCTTC	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	244
PmaCI	CACGTG	1 cut(s)	288
PmlI	CACGTG	1 cut(s)	288
Ppu21I	YACGTR	1 cut(s)	288
PspCI	CACGTG	1 cut(s)	288
PspFI	CCCAGC	1 cut(s)	263
PspN4I	GGNNCC	2 cut(s)	327, 363
PsrI	GAACNNNNNNTAC	2 cut(s)	377, 409
RsaI	GTAC	2 cut(s)	143, 386
RsaNI	GTAC	2 cut(s)	142, 385
RseI	CAYNNNNRTG	1 cut(s)	320
SapI	GCTCTTC	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	15
Sau3AI	GATC	3 cut(s)	198, 350, 450
SduI	GDGCHC	1 cut(s)	364
SetI	ASST	8 cut(s)	21, 140, 168, 195, 216, 265, 290, 487
SfaNI	GCATC	2 cut(s)	16, 168
SmiMI	CAYNNNNRTG	1 cut(s)	320
SmlI	CTYRAG	2 cut(s)	292, 397
SmoI	CTYRAG	2 cut(s)	292, 397
SsiI	CCGC	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	382
TaiI	ACGT	2 cut(s)	195, 290
TaqI	TCGA	2 cut(s)	126, 449
TatI	WGTACW	1 cut(s)	384
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	1 cut(s)	322
TseFI	GTSAC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	158
TspRI	CASTG	1 cut(s)	322
XagI	CCTNNNNNAGG	1 cut(s)	493
XceI	RCATGY	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.