Rorug02G0477600

Protein of unknown function (DUF2781)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
60892613 .. 60897574
4962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0477600.1

Sequence Viewer

Length: 1095 bp
ATGATGTTGTTGGAATCAATACTGGAAAAAGGTTGTTGCTTTCGTTTGGACTTGCCGTTGTTTATCCTCAATATAGCTCTGGCCGTTTTCAATGGCGTTCTTGCTGCGATTGCGTTTTCTCAGCTGGTCAGGATTCACTTGCGCAATCAACAAATTGGATGGACACGCCAAAAAGTACTCCACCTCATGATTGGCTGTTCTAACTTGGGTTACTTCCTATATTTTACATCTACACTGATTGCCACTTTTGAGCAGTGGTTTTGCTGGTCTAATGTCTGCGGGTTCATTCTAATGGCCTACCCTAAAATTCTGTTGCTTGCAGCTTTTCTTCTAGTCCTATCCTTTTGGGTGGACCTTTGCCATCAGGCAAATGATGAAGAGGATGATGATGATGATGATGACAGTAGCATGCAGCATGCCTTGTTGGAAAATTCGAAGAATAAACACCGTTCATCAGTCACAAATGGTCATAGGATTTGTTGCTCATTCCCTAGCATTCATGTTGGAAGTCACCAGAAATTTGTGATTGCAGTTGTTGGGTTTGTCCTTATTTTGATGATGTCATTTTCTGTGGTAATCTGGATTGGTGCGGGGAAGAATCCCATTGATTCTTCAGCAGCGGCTGAGGTATATGAAGACCTTCTCGCCTTTGTAGTTCTTTTTTTAGGAGGAGGATTAGGTTGCTATGGCATTCTGCTACTTCGTAAGTTAAGGAAAGTACGGTCTGAGAAAGCTTCATCTGAAATGTGGAAGGTTGGCGGTTTAGCAGTTGCTTCTGTTGTATGTTTTACATCAAGTGCATTAGTAGCTCTTCTTACAGATATTCCGCTATATGAACCTTGGAGGCTGAAAAAAGCATATGGCGGGAAAGCACTAGTTTTTCTGATGCTGTACTATTTTATAGGCTCTTGGGTACCCTCAGCTTTTGTATTATGGTTCATGAGAGAATTACCGCCACCAATCACTAATCGCCAACGGGAACAATCAAGAACAATTACTTTTATCAGCTATGCTGGAGTGGGCCGACAGCATCCTCGTCACTGGGCTACAGTAACAAGTTCAAATAATCAGGCATCGCGAGCAAGTCCCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

364

Amino Acids

40.82

Weight (kDa)

8.64

Isoelectric Point (pI)

37.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
THH1_TOM1-3_dom PF06454 24 - 125 3.9e-11 THH1/TOM1/TOM3 domain
THH1_TOM1-3_dom PF06454 185 - 326 2.6e-06 THH1/TOM1/TOM3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 143
Acc65I GGTACC 1 cut(s) 913
AccB1I GGYRCC 1 cut(s) 913
AccII CGCG 1 cut(s) 1078
AciI CCGC 7 cut(s) 279, 590, 620, 759, 827, 864, 953
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 3 cut(s) 306, 430, 518
AcuI CTGAAG 1 cut(s) 597
AfaI GTAC 4 cut(s) 177, 720, 893, 915
AgsI TTSAA 2 cut(s) 91, 1062
AhlI ACTAGT 1 cut(s) 874
AluBI AGCT 7 cut(s) 77, 124, 323, 734, 809, 923, 1008
AluI AGCT 7 cut(s) 77, 124, 323, 734, 809, 923, 1008
AlwNI CAGNNNCTG 1 cut(s) 623
AoxI GGCC 3 cut(s) 81, 294, 1021
ApeKI GCWGC 4 cut(s) 104, 320, 412, 617
ApoI RAATTY 3 cut(s) 306, 430, 518
Asp700I GAANNNNTTC 1 cut(s) 639
Asp718I GGTACC 1 cut(s) 913
AspLEI GCGC 1 cut(s) 144
AspS9I GGNCC 2 cut(s) 352, 1021
AsuHPI GGTGA 1 cut(s) 503
AsuII TTCGAA 1 cut(s) 434
AvaII GGWCC 1 cut(s) 352
BanI GGYRCC 1 cut(s) 913
BbsI GAAGAC 1 cut(s) 642
BbvCI CCTCAGC 2 cut(s) 624, 919
BbvI GCAGC 4 cut(s) 91, 332, 424, 629
BccI CCATC 2 cut(s) 153, 369
BceAI ACGGC 2 cut(s) 40, 68
BcuI ACTAGT 1 cut(s) 874
BfaI CTAG 3 cut(s) 332, 492, 875
BfmI CTRYAG 1 cut(s) 1047
BisI GCNGC 5 cut(s) 105, 321, 413, 618, 621
BlsI GCNGC 5 cut(s) 106, 322, 414, 619, 622
BmcAI AGTACT 1 cut(s) 177
Bme18I GGWCC 1 cut(s) 352
BmgT120I GGNCC 2 cut(s) 352, 1021
BmiI GGNNCC 1 cut(s) 915
BmrI ACTGGG 1 cut(s) 1051
BmsI GCATC 3 cut(s) 876, 1039, 1082
BmuI ACTGGG 1 cut(s) 1051
BpiI GAAGAC 1 cut(s) 642
BpmI CTGGAG 1 cut(s) 1035
Bpu10I CCTNAGC 2 cut(s) 624, 919
Bpu14I TTCGAA 1 cut(s) 434
BsaJI CCNNGG 1 cut(s) 839
Bse1I ACTGG 2 cut(s) 27, 1046
BseDI CCNNGG 1 cut(s) 839
BseGI GGATG 3 cut(s) 164, 388, 1030
BseMII CTCAG 4 cut(s) 134, 615, 717, 933
BseNI ACTGG 2 cut(s) 27, 1046
BseRI GAGGAG 1 cut(s) 684
BseXI GCAGC 4 cut(s) 91, 332, 424, 629
Bsh1236I CGCG 1 cut(s) 1078
BshFI GGCC 3 cut(s) 83, 296, 1023
BshNI GGYRCC 1 cut(s) 913
BslFI GGGAC 1 cut(s) 1071
BsmFI GGGAC 1 cut(s) 1071
BsmI GAATGC 2 cut(s) 495, 690
BsnI GGCC 3 cut(s) 83, 296, 1023
Bsp119I TTCGAA 1 cut(s) 434
Bsp68I TCGCGA 1 cut(s) 1078
BspACI CCGC 7 cut(s) 279, 590, 620, 759, 827, 864, 953
BspANI GGCC 3 cut(s) 83, 296, 1023
BspCNI CTCAG 4 cut(s) 133, 616, 718, 932
BspFNI CGCG 1 cut(s) 1078
BspHI TCATGA 2 cut(s) 186, 939
BspLI GGNNCC 1 cut(s) 915
BspQI GCTCTTC 1 cut(s) 816
BspT104I TTCGAA 1 cut(s) 434
BspT107I GGYRCC 1 cut(s) 913
BsrI ACTGG 2 cut(s) 27, 1046
BssECI CCNNGG 1 cut(s) 839
BssT1I CCWWGG 1 cut(s) 839
Bst4CI ACNGT 4 cut(s) 404, 449, 723, 1051
Bst6I CTCTTC 2 cut(s) 372, 816
BstBI TTCGAA 1 cut(s) 434
BstC8I GCNNGC 4 cut(s) 318, 410, 417, 1080
BstDEI CTNAG 4 cut(s) 120, 624, 726, 919
BstF5I GGATG 3 cut(s) 164, 388, 1030
BstFNI CGCG 1 cut(s) 1078
BstHHI GCGC 1 cut(s) 144
BstMWI GCNNNNNNNGC 3 cut(s) 110, 806, 1079
BstNSI RCATGY 2 cut(s) 412, 419
BstSFI CTRYAG 1 cut(s) 1047
BstUI CGCG 1 cut(s) 1078
BstV1I GCAGC 4 cut(s) 91, 332, 424, 629
BstV2I GAAGAC 1 cut(s) 642
BsuRI GGCC 3 cut(s) 83, 296, 1023
BtgZI GCGATG 1 cut(s) 1059
BtsCI GGATG 3 cut(s) 164, 388, 1030
BtsI GCAGTG 1 cut(s) 260
BtsIMutI CAGTG 3 cut(s) 233, 260, 1039
BtuMI TCGCGA 1 cut(s) 1078
Cac8I GCNNGC 4 cut(s) 318, 410, 417, 1080
CaiI CAGNNNCTG 1 cut(s) 623
CciI TCATGA 2 cut(s) 186, 939
CfoI GCGC 1 cut(s) 144
Cfr13I GGNCC 2 cut(s) 352, 1021
Csp6I GTAC 4 cut(s) 176, 719, 892, 914
CviAII CATG 5 cut(s) 187, 409, 416, 500, 940
CviQI GTAC 4 cut(s) 176, 719, 892, 914
DdeI CTNAG 4 cut(s) 120, 624, 726, 919
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 2 cut(s) 372, 816
EarI CTCTTC 2 cut(s) 372, 816
Eco130I CCWWGG 1 cut(s) 839
Eco47I GGWCC 1 cut(s) 352
Eco57I CTGAAG 1 cut(s) 597
EcoT14I CCWWGG 1 cut(s) 839
ErhI CCWWGG 1 cut(s) 839
FaeI CATG 5 cut(s) 190, 412, 419, 503, 943
FaqI GGGAC 1 cut(s) 1071
FatI CATG 5 cut(s) 186, 408, 415, 499, 939
FauI CCCGC 3 cut(s) 272, 583, 857
FauNDI CATATG 1 cut(s) 859
Fnu4HI GCNGC 5 cut(s) 105, 321, 413, 618, 621
FokI GGATG 3 cut(s) 171, 395, 1017
Fsp4HI GCNGC 5 cut(s) 105, 321, 413, 618, 621
FspBI CTAG 3 cut(s) 332, 492, 875
FspI TGCGCA 1 cut(s) 143
GlaI GCGC 1 cut(s) 143
GluI GCNGC 5 cut(s) 105, 321, 413, 618, 621
GsuI CTGGAG 1 cut(s) 1035
HaeIII GGCC 3 cut(s) 83, 296, 1023
HhaI GCGC 1 cut(s) 144
Hin1II CATG 5 cut(s) 190, 412, 419, 503, 943
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 732
HinfI GANTC 4 cut(s) 14, 133, 598, 608
HphI GGTGA 1 cut(s) 503
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 3 cut(s) 727, 742, 885
Hpy188III TCNNGA 6 cut(s) 130, 187, 580, 940, 987, 1077
Hpy8I GTNNAC 1 cut(s) 352
HpyAV CCTTC 2 cut(s) 650, 745
HpyCH4III ACNGT 4 cut(s) 404, 449, 723, 1051
HpyCH4V TGCA 4 cut(s) 320, 412, 530, 800
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 806, 1079
HpyF3I CTNAG 4 cut(s) 120, 624, 726, 919
Hsp92II CATG 5 cut(s) 190, 412, 419, 503, 943
HspAI GCGC 1 cut(s) 142
KpnI GGTACC 1 cut(s) 917
LguI GCTCTTC 1 cut(s) 816
Lsp1109I GCAGC 4 cut(s) 91, 332, 424, 629
LweI GCATC 3 cut(s) 876, 1039, 1082
MaeI CTAG 3 cut(s) 332, 492, 875
MaeIII GTNAC 5 cut(s) 209, 457, 509, 1037, 1051
MboII GAAGA 7 cut(s) 320, 389, 448, 603, 607, 647, 803
MluCI AATT 6 cut(s) 153, 306, 430, 518, 947, 993
MmeI TCCRAC 2 cut(s) 405, 484
MnlI CCTC 9 cut(s) 77, 194, 373, 619, 662, 665, 837, 928, 1044
MroXI GAANNNNTTC 1 cut(s) 639
MseI TTAA 2 cut(s) 710, 1093
MslI CAYNNNNRTG 1 cut(s) 290
MspA1I CMGCKG 2 cut(s) 124, 620
Mva1269I GAATGC 2 cut(s) 495, 690
MvnI CGCG 1 cut(s) 1078
MwoI GCNNNNNNNGC 3 cut(s) 110, 806, 1079
NdeI CATATG 1 cut(s) 859
NlaIII CATG 5 cut(s) 190, 412, 419, 503, 943
NlaIV GGNNCC 1 cut(s) 915
NmuCI GTSAC 3 cut(s) 457, 509, 1037
NruI TCGCGA 1 cut(s) 1078
NsbI TGCGCA 1 cut(s) 143
NspI RCATGY 2 cut(s) 412, 419
NspV TTCGAA 1 cut(s) 434
PaeI GCATGC 2 cut(s) 412, 419
PagI TCATGA 2 cut(s) 186, 939
PciSI GCTCTTC 1 cut(s) 816
PctI GAATGC 2 cut(s) 495, 690
PdmI GAANNNNTTC 1 cut(s) 639
PfeI GAWTC 4 cut(s) 14, 133, 598, 608
PkrI GCNGC 5 cut(s) 106, 322, 414, 619, 622
PspN4I GGNNCC 1 cut(s) 915
PspPI GGNCC 2 cut(s) 352, 1021
PstNI CAGNNNCTG 1 cut(s) 623
PvuII CAGCTG 1 cut(s) 124
RruI TCGCGA 1 cut(s) 1078
RsaI GTAC 4 cut(s) 177, 720, 893, 915
RsaNI GTAC 4 cut(s) 176, 719, 892, 914
RseI CAYNNNNRTG 1 cut(s) 290
SapI GCTCTTC 1 cut(s) 816
SaqAI TTAA 2 cut(s) 710, 1093
SatI GCNGC 5 cut(s) 105, 321, 413, 618, 621
Sau96I GGNCC 2 cut(s) 352, 1021
ScaI AGTACT 1 cut(s) 177
SfaNI GCATC 3 cut(s) 876, 1039, 1082
SfcI CTRYAG 1 cut(s) 1047
SfuI TTCGAA 1 cut(s) 434
SinI GGWCC 1 cut(s) 352
SmiMI CAYNNNNRTG 1 cut(s) 290
SpeI ACTAGT 1 cut(s) 874
SphI GCATGC 2 cut(s) 412, 419
Sse9I AATT 6 cut(s) 153, 306, 430, 518, 947, 993
SsiI CCGC 7 cut(s) 279, 590, 620, 759, 827, 864, 953
SspMI CTAG 3 cut(s) 332, 492, 875
StyI CCWWGG 1 cut(s) 839
TaaI ACNGT 4 cut(s) 404, 449, 723, 1051
TaqI TCGA 1 cut(s) 434
TasI AATT 6 cut(s) 153, 306, 430, 518, 947, 993
TatI WGTACW 2 cut(s) 175, 891
TauI GCSGC 1 cut(s) 623
TfiI GAWTC 4 cut(s) 14, 133, 598, 608
Tru1I TTAA 2 cut(s) 710, 1093
Tru9I TTAA 2 cut(s) 710, 1093
TscAI CASTG 3 cut(s) 240, 260, 1046
TseFI GTSAC 3 cut(s) 457, 509, 1037
TseI GCWGC 4 cut(s) 104, 320, 412, 617
Tsp45I GTSAC 3 cut(s) 457, 509, 1037
TspDTI ATGAA 8 cut(s) 274, 390, 441, 488, 648, 726, 849, 928
TspRI CASTG 3 cut(s) 240, 260, 1046
VpaK11BI GGWCC 1 cut(s) 352
XapI RAATTY 3 cut(s) 306, 430, 518
XceI RCATGY 2 cut(s) 412, 419
XcmI CCANNNNNNNNNTGG 1 cut(s) 188
XmnI GAANNNNTTC 1 cut(s) 639
XspI CTAG 3 cut(s) 332, 492, 875
ZrmI AGTACT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.