Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001495

Physical Location & Seq

Genomic Coordinates Reverse (-)

7852112 .. 7853130

Gene Structure 1019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1107600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGGTGTTCTTGTCAAGCTTATTGATGCGTTACTCTTTCTCTTGCTCCTGGCGATCGCTTTCACAACGCCATTGATTGAAGCGCAAGCATGCCTCCCTCGCAATCTCTACCCGGACATTCTCGTGGACCTCAGGAATTGGTACACTCGTGAGTCCGGCGACTATCTCATGACCGAAATGCCTGATTTCTACGTCGGGATCATGTGGGTTGAGCTTGTTTTCCAGTGGCCTCTCGTGATAGTTAACCTTTACGGTATCTTGGCTGGAAAGCCTTGGTTCAACATTACGTGCTTCAGCTATGGAATATTTCTTTTCACTTCCATGGTGCCAATATTTGCAGAATTGACGTGGTCAGGAAGGGCACATGATAAGCTACTGACGGTGTACTATTGTTTCTTGAGTTTGGGAGTTTTAGCCATACTTCGTGGGCTGCTACCCAACTCATCAACCAAGCATGCTGTAACCATTGGCAAGAGACCCGCTTCAGGCAGGAAGAAGAGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2781

Protein Analysis

169

Amino Acids

19.08

Weight (kDa)

9.03

Isoelectric Point (pI)

31.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EBP	PF05241	41 - 120	2.7e-11	EXPERA (EXPanded EBP superfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05210 AT2G32380
fragaria_vesca	FvH4_6g43330 FvH4_6g43370 FvH4_6g43380 FvH4_7g06210
malus_domestica	MD09G1107600.v1.1 MD17G1095200.v1.1 MD17G1095300.v1.1 MD17G1095500.v1.1 MD17G1095800.v1.1
prunus_persica	Prupe.3G218100_v2.0.a1 Prupe.3G218400_v2.0.a1 Prupe.3G218400_v2.0.a1
pyrus_communis	pycom09g02970 pycom17g09170 pycom17g09180 pycom17g09200 pycom17g09210
rosa_chinensis	RchiOBHm_Chr2g0159661 RchiOBHm_Chr2g0159681 RchiOBHm_Chr2g0159721
rosa_laevigata	RLG00000021171 RLG00000021173 RLG00000021174 RLG00000021176
rosa_multiflora	Rmu_sc0004966.1_g000004 Rmu_sc0011502.1_g000006 Rmu_sc0036321.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090280 Rroxscaffold_2G00090290 Rroxscaffold_2G00090310 Rroxscaffold_2G00090320 Rroxscaffold_2G00090340
rosa_rugosa	Rorug02G0477600 Rorug02G0477800 Rorug02G0478000
rosa_samantha	Rh2AG544500 Rh2AG544700 Rh2AG544800 Rh2BG557300 Rh2BG557600 Rh2CG527600 Rh2CG527800 Rh2CG527900 Rh2DG566400 Rh2DG566600 Rh2DG567100 Rh4CG047800
rosa_wichuraiana	Rw2G045030 Rw2G045050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	325
AciI	CCGC	1 cut(s)	480
AclWI	GGATC	1 cut(s)	206
AcuI	CTGAAG	2 cut(s)	277, 468
AfaI	GTAC	2 cut(s)	143, 386
AfiI	CCNNNNNNNGG	1 cut(s)	485
AgsI	TTSAA	2 cut(s)	80, 280
AjiI	CACGTC	1 cut(s)	348
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	4 cut(s)	19, 214, 297, 373
AluI	AGCT	4 cut(s)	19, 214, 297, 373
Alw26I	GTCTC	1 cut(s)	469
AlwI	GGATC	1 cut(s)	206
AoxI	GGCC	1 cut(s)	227
ApeKI	GCWGC	1 cut(s)	430
AsiSI	GCGATCGC	1 cut(s)	57
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	127
AsuC2I	CCSGG	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	127
AxyI	CCTNAGG	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	364
BaeI	ACNNNNGTAYC	2 cut(s)	133, 166
BanI	GGYRCC	1 cut(s)	325
BauI	CACGAG	3 cut(s)	122, 147, 233
BbvI	GCAGC	1 cut(s)	417
BciT130I	CCWGG	1 cut(s)	50
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	469
BisI	GCNGC	1 cut(s)	431
BlsI	GCNGC	1 cut(s)	432
Bme1390I	CCNGG	2 cut(s)	50, 113
Bme18I	GGWCC	1 cut(s)	127
BmgBI	CACGTC	1 cut(s)	348
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	1 cut(s)	327
BmrFI	CCNGG	2 cut(s)	50, 113
BmsI	GCATC	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	418
BpuMI	CCSGG	1 cut(s)	113
BsaAI	YACGTR	1 cut(s)	288
BsaI	GGTCTC	1 cut(s)	469
BsaJI	CCNNGG	2 cut(s)	272, 321
Bsc4I	CCNNNNNNNGG	1 cut(s)	485
Bse1I	ACTGG	1 cut(s)	223
Bse21I	CCTNAGG	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	272, 321
BseLI	CCNNNNNNNGG	1 cut(s)	485
BseMII	CTCAG	1 cut(s)	145
BseNI	ACTGG	1 cut(s)	223
BseSI	GKGCMC	1 cut(s)	364
BseXI	GCAGC	1 cut(s)	417
Bsh1285I	CGRYCG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	229
BshNI	GGYRCC	1 cut(s)	325
BsiEI	CGRYCG	1 cut(s)	57
BsiSI	CCGG	2 cut(s)	113, 156
BslI	CCNNNNNNNGG	1 cut(s)	485
BsmAI	GTCTC	1 cut(s)	469
BsnI	GGCC	1 cut(s)	229
Bso31I	GGTCTC	1 cut(s)	469
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	2 cut(s)	54, 198
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	1 cut(s)	480
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	1 cut(s)	144
BspHI	TCATGA	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	327
BspPI	GGATC	1 cut(s)	206
BspT107I	GGYRCC	1 cut(s)	325
BspTNI	GGTCTC	1 cut(s)	469
BsrI	ACTGG	1 cut(s)	223
BssECI	CCNNGG	2 cut(s)	272, 321
BssMI	GATC	2 cut(s)	54, 198
BssSI	CACGAG	3 cut(s)	122, 147, 233
BssT1I	CCWWGG	2 cut(s)	272, 321
Bst2BI	CACGAG	3 cut(s)	122, 147, 233
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	2 cut(s)	254, 382
Bst6I	CTCTTC	1 cut(s)	491
BstBAI	YACGTR	1 cut(s)	288
BstC8I	GCNNGC	3 cut(s)	87, 91, 456
BstDEI	CTNAG	1 cut(s)	131
BstDSI	CCRYGG	1 cut(s)	321
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	2 cut(s)	57, 201
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	2 cut(s)	54, 198
BstMCI	CGRYCG	1 cut(s)	57
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstNI	CCWGG	1 cut(s)	50
BstNSI	RCATGY	2 cut(s)	93, 458
BstSCI	CCNGG	2 cut(s)	48, 111
BstSLI	GKGCMC	1 cut(s)	364
BstV1I	GCAGC	1 cut(s)	417
Bsu36I	CCTNAGG	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	229
BtgI	CCRYGG	1 cut(s)	321
BtrI	CACGTC	1 cut(s)	348
BtsIMutI	CAGTG	1 cut(s)	230
Cac8I	GCNNGC	3 cut(s)	87, 91, 456
CciI	TCATGA	1 cut(s)	168
CfoI	GCGC	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	127
Csp6I	GTAC	2 cut(s)	142, 385
CviAII	CATG	6 cut(s)	90, 169, 202, 322, 365, 455
CviJI	RGCY	9 cut(s)	19, 214, 229, 263, 271, 297, 373, 416, 430
CviKI_1	RGCY	9 cut(s)	19, 214, 229, 263, 271, 297, 373, 416, 430
CviQI	GTAC	2 cut(s)	142, 385
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	2 cut(s)	56, 200
DpnII	GATC	2 cut(s)	54, 198
Eam1104I	CTCTTC	1 cut(s)	491
EarI	CTCTTC	1 cut(s)	491
Eco130I	CCWWGG	2 cut(s)	272, 321
Eco31I	GGTCTC	1 cut(s)	469
Eco47I	GGWCC	1 cut(s)	127
Eco57I	CTGAAG	2 cut(s)	277, 468
Eco81I	CCTNAGG	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	48
EcoT14I	CCWWGG	2 cut(s)	272, 321
ErhI	CCWWGG	2 cut(s)	272, 321
FaeI	CATG	6 cut(s)	93, 172, 205, 325, 368, 458
FaiI	YATR	8 cut(s)	91, 170, 203, 300, 323, 366, 419, 456
FatI	CATG	6 cut(s)	89, 168, 201, 321, 364, 454
FauI	CCCGC	1 cut(s)	487
Fnu4HI	GCNGC	1 cut(s)	431
Fsp4HI	GCNGC	1 cut(s)	431
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	1 cut(s)	431
HaeIII	GGCC	1 cut(s)	229
HapII	CCGG	2 cut(s)	113, 156
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	6 cut(s)	93, 172, 205, 325, 368, 458
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	1 cut(s)	152
HpaI	GTTAAC	1 cut(s)	244
HpaII	CCGG	2 cut(s)	113, 156
Hpy166II	GTNNAC	4 cut(s)	127, 144, 244, 385
Hpy188III	TCNNGA	7 cut(s)	133, 149, 169, 196, 235, 354, 397
Hpy8I	GTNNAC	4 cut(s)	127, 144, 244, 385
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	1 cut(s)	351
HpyCH4III	ACNGT	2 cut(s)	254, 382
HpyCH4IV	ACGT	3 cut(s)	192, 287, 347
HpyCH4V	TGCA	1 cut(s)	338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	1 cut(s)	131
HpySE526I	ACGT	3 cut(s)	192, 287, 347
Hsp92II	CATG	6 cut(s)	93, 172, 205, 325, 368, 458
HspAI	GCGC	1 cut(s)	83
KspAI	GTTAAC	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	54, 198
LmnI	GCTCC	1 cut(s)	51
Lsp1109I	GCAGC	1 cut(s)	417
LweI	GCATC	1 cut(s)	16
MaeII	ACGT	3 cut(s)	192, 287, 347
MaeIII	GTNAC	2 cut(s)	30, 460
MalI	GATC	2 cut(s)	56, 200
MboI	GATC	2 cut(s)	54, 198
MboII	GAAGA	1 cut(s)	505
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	2 cut(s)	136, 341
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	4 cut(s)	104, 108, 140, 240
MseI	TTAA	2 cut(s)	243, 505
MslI	CAYNNNNRTG	2 cut(s)	122, 320
MspI	CCGG	2 cut(s)	113, 156
MspR9I	CCNGG	2 cut(s)	50, 113
MvaI	CCWGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	1 cut(s)	99
NciI	CCSGG	1 cut(s)	113
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	2 cut(s)	54, 198
NlaIII	CATG	6 cut(s)	93, 172, 205, 325, 368, 458
NlaIV	GGNNCC	1 cut(s)	327
NspI	RCATGY	2 cut(s)	93, 458
PaeI	GCATGC	2 cut(s)	93, 458
PagI	TCATGA	1 cut(s)	168
PflFI	GACNNNGTC	1 cut(s)	349
PkrI	GCNGC	1 cut(s)	432
Ple19I	CGATCG	1 cut(s)	57
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
Ppu21I	YACGTR	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	327
PspPI	GGNCC	1 cut(s)	127
PsyI	GACNNNGTC	1 cut(s)	349
PvuI	CGATCG	1 cut(s)	57
RgaI	GCGATCGC	1 cut(s)	57
RsaI	GTAC	2 cut(s)	143, 386
RsaNI	GTAC	2 cut(s)	142, 385
RseI	CAYNNNNRTG	2 cut(s)	122, 320
SaqAI	TTAA	2 cut(s)	243, 505
SatI	GCNGC	1 cut(s)	431
Sau3AI	GATC	2 cut(s)	54, 198
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	2 cut(s)	50, 113
SduI	GDGCHC	1 cut(s)	364
SetI	ASST	9 cut(s)	21, 132, 195, 216, 249, 290, 299, 350, 375
SfaAI	GCGATCGC	1 cut(s)	57
SfaNI	GCATC	1 cut(s)	16
SgfI	GCGATCGC	1 cut(s)	57
SinI	GGWCC	1 cut(s)	127
SmiMI	CAYNNNNRTG	2 cut(s)	122, 320
SmlI	CTYRAG	1 cut(s)	397
SmoI	CTYRAG	1 cut(s)	397
SphI	GCATGC	2 cut(s)	93, 458
Sse9I	AATT	2 cut(s)	136, 341
SsiI	CCGC	1 cut(s)	480
SspI	AATATT	2 cut(s)	306, 333
StyD4I	CCNGG	2 cut(s)	48, 111
StyI	CCWWGG	2 cut(s)	272, 321
TaaI	ACNGT	2 cut(s)	254, 382
TaiI	ACGT	3 cut(s)	195, 290, 350
TaqII	GACCGA	1 cut(s)	188
TasI	AATT	2 cut(s)	136, 341
TatI	WGTACW	1 cut(s)	384
Tru1I	TTAA	2 cut(s)	243, 505
Tru9I	TTAA	2 cut(s)	243, 505
TscAI	CASTG	1 cut(s)	230
TseI	GCWGC	1 cut(s)	430
TspRI	CASTG	1 cut(s)	230
Tth111I	GACNNNGTC	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	127
XceI	RCATGY	2 cut(s)	93, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.