RchiOBHm_Chr2g0159681

Transmembrane protein 97-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001495
Physical Location & Seq
Forward (+)
75723709 .. 75724747
1039 bp
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UTR
Exon/CDS
Intron
PRQ52825

Sequence Viewer

Length: 459 bp
ATGGCAGTTTCGCCTATGGTGCACGCGCAGTTTGTTCTGCCTCTGAGCTTCTTCCCGGAGTGGATGGTGGAGCAGAAGAACTGGTACATGCGCGAGTTCGATGACTACTTTTATGTCGAGAAGCCTGATTTCTTTATTGGTCTGGTTTTGGTTGAGCTTGTGTTCCAGTGGCCTCTCGCCCTTGCCATCTTGTACGGGATGTTGGCTTCCAAGAATTGGTACGGTACCACTTGCTTGGTTATGGTGACTGCATTAGCGGGACTCATTGGATCAGACAAGGCATCTGGTAAGGTCTTAACATTGTACTACACTTTGGGGTGCGCTGTCCTGACCATACTTCTTGGGTTGATGCCACCATCAACTACTTCAAACAATGACAAAGCAAAAACAAAAAGGATTGGCGCGCGTTCCGAAGAAAATGATCTAGTACTCAGAAGATCAATTTTTTTCTTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2781

Protein Analysis

152

Amino Acids

17.25

Weight (kDa)

6.56

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EBP PF05241 22 - 85 8.6e-07 EXPERA (EXPanded EBP superfamily)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 224
AccB1I GGYRCC 1 cut(s) 224
AccB7I CCANNNNNTGG 1 cut(s) 216
AccII CGCG 4 cut(s) 26, 93, 404, 406
AciI CCGC 1 cut(s) 257
AclWI GGATC 1 cut(s) 277
AfaI GTAC 6 cut(s) 86, 194, 221, 226, 305, 429
AfiI CCNNNNNNNGG 1 cut(s) 216
AgsI TTSAA 1 cut(s) 369
AluBI AGCT 2 cut(s) 48, 157
AluI AGCT 2 cut(s) 48, 157
Alw21I GWGCWC 1 cut(s) 24
Alw44I GTGCAC 1 cut(s) 20
AlwI GGATC 1 cut(s) 277
AoxI GGCC 1 cut(s) 170
ApaLI GTGCAC 1 cut(s) 20
Asp718I GGTACC 1 cut(s) 224
AspLEI GCGC 5 cut(s) 28, 93, 323, 404, 406
AsuC2I CCSGG 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 256
BaeGI GKGCMC 1 cut(s) 24
BanI GGYRCC 1 cut(s) 224
BarI GAAGNNNNNNTAC 2 cut(s) 68, 100
Bbv12I GWGCWC 1 cut(s) 24
BccI CCATC 3 cut(s) 58, 194, 364
BcnI CCSGG 1 cut(s) 56
BfaI CTAG 1 cut(s) 425
BmcAI AGTACT 1 cut(s) 429
Bme1390I CCNGG 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 56
BmsI GCATC 2 cut(s) 290, 339
BpuMI CCSGG 1 cut(s) 56
Bsc4I CCNNNNNNNGG 1 cut(s) 216
Bse1I ACTGG 2 cut(s) 86, 166
BseGI GGATG 2 cut(s) 69, 204
BseLI CCNNNNNNNGG 1 cut(s) 216
BseMII CTCAG 2 cut(s) 35, 445
BseNI ACTGG 2 cut(s) 86, 166
BsePI GCGCGC 1 cut(s) 402
BseSI GKGCMC 1 cut(s) 24
Bsh1236I CGCG 4 cut(s) 26, 93, 404, 406
BshFI GGCC 1 cut(s) 172
BshNI GGYRCC 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 24
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 1 cut(s) 216
BsmFI GGGAC 1 cut(s) 273
BsnI GGCC 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 3 cut(s) 269, 421, 437
BspACI CCGC 1 cut(s) 257
BspANI GGCC 1 cut(s) 172
BspCNI CTCAG 2 cut(s) 36, 444
BspFNI CGCG 4 cut(s) 26, 93, 404, 406
BspLI GGNNCC 1 cut(s) 226
BspPI GGATC 1 cut(s) 277
BspT107I GGYRCC 1 cut(s) 224
BsrI ACTGG 2 cut(s) 86, 166
BssHII GCGCGC 1 cut(s) 402
BssMI GATC 3 cut(s) 269, 421, 437
Bst4CI ACNGT 1 cut(s) 224
BstC8I GCNNGC 2 cut(s) 24, 404
BstDEI CTNAG 2 cut(s) 44, 431
BstF5I GGATG 2 cut(s) 69, 204
BstFNI CGCG 4 cut(s) 26, 93, 404, 406
BstHHI GCGC 5 cut(s) 28, 93, 323, 404, 406
BstKTI GATC 3 cut(s) 272, 424, 440
BstMBI GATC 3 cut(s) 269, 421, 437
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstNSI RCATGY 1 cut(s) 91
BstSCI CCNGG 1 cut(s) 54
BstSLI GKGCMC 1 cut(s) 24
BstUI CGCG 4 cut(s) 26, 93, 404, 406
BstXI CCANNNNNNTGG 1 cut(s) 235
BsuRI GGCC 1 cut(s) 172
BtsCI GGATG 2 cut(s) 69, 204
BtsIMutI CAGTG 1 cut(s) 173
Cac8I GCNNGC 2 cut(s) 24, 404
CfoI GCGC 5 cut(s) 28, 93, 323, 404, 406
Csp6I GTAC 6 cut(s) 85, 193, 220, 225, 304, 428
CviAII CATG 1 cut(s) 88
CviJI RGCY 5 cut(s) 48, 124, 157, 172, 206
CviKI_1 RGCY 5 cut(s) 48, 124, 157, 172, 206
CviQI GTAC 6 cut(s) 85, 193, 220, 225, 304, 428
DdeI CTNAG 2 cut(s) 44, 431
DpnI GATC 3 cut(s) 271, 423, 439
DpnII GATC 3 cut(s) 269, 421, 437
FaeI CATG 1 cut(s) 91
FaiI YATR 5 cut(s) 17, 89, 114, 242, 335
FaqI GGGAC 1 cut(s) 273
FatI CATG 1 cut(s) 87
FauI CCCGC 1 cut(s) 250
FokI GGATG 2 cut(s) 76, 211
FspBI CTAG 1 cut(s) 425
GlaI GCGC 5 cut(s) 27, 92, 322, 403, 405
HaeIII GGCC 1 cut(s) 172
HapII CCGG 1 cut(s) 56
HhaI GCGC 5 cut(s) 28, 93, 323, 404, 406
Hin1II CATG 1 cut(s) 91
Hin6I GCGC 5 cut(s) 26, 91, 321, 402, 404
HinP1I GCGC 5 cut(s) 26, 91, 321, 402, 404
HinfI GANTC 1 cut(s) 261
HpaII CCGG 1 cut(s) 56
HphI GGTGA 1 cut(s) 256
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 4 cut(s) 45, 274, 412, 434
Hpy188III TCNNGA 2 cut(s) 118, 328
Hpy8I GTNNAC 1 cut(s) 22
HpyCH4III ACNGT 1 cut(s) 224
HpyCH4V TGCA 2 cut(s) 22, 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
HpyF3I CTNAG 2 cut(s) 44, 431
Hsp92II CATG 1 cut(s) 91
HspAI GCGC 5 cut(s) 26, 91, 321, 402, 404
KpnI GGTACC 1 cut(s) 228
Kzo9I GATC 3 cut(s) 269, 421, 437
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 7 cut(s) 67, 69, 128, 138, 179, 270, 341
LweI GCATC 2 cut(s) 290, 339
MaeI CTAG 1 cut(s) 425
MaeIII GTNAC 1 cut(s) 244
MalI GATC 3 cut(s) 271, 423, 439
MboI GATC 3 cut(s) 269, 421, 437
MboII GAAGA 4 cut(s) 43, 88, 425, 447
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 2 cut(s) 214, 441
MlyI GAGTC 1 cut(s) 255
MnlI CCTC 2 cut(s) 51, 183
MseI TTAA 1 cut(s) 296
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 56
MvnI CGCG 4 cut(s) 26, 93, 404, 406
MwoI GCNNNNNNNGC 1 cut(s) 19
NciI CCSGG 1 cut(s) 56
NdeII GATC 3 cut(s) 269, 421, 437
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 1 cut(s) 226
NmuCI GTSAC 1 cut(s) 244
NspI RCATGY 1 cut(s) 91
PauI GCGCGC 1 cut(s) 402
PflMI CCANNNNNTGG 1 cut(s) 216
PfoI TCCNGGA 1 cut(s) 54
PleI GAGTC 1 cut(s) 255
PpsI GAGTC 1 cut(s) 255
PspN4I GGNNCC 1 cut(s) 226
PteI GCGCGC 1 cut(s) 402
RsaI GTAC 6 cut(s) 86, 194, 221, 226, 305, 429
RsaNI GTAC 6 cut(s) 85, 193, 220, 225, 304, 428
SaqAI TTAA 1 cut(s) 296
Sau3AI GATC 3 cut(s) 269, 421, 437
ScaI AGTACT 1 cut(s) 429
SchI GAGTC 1 cut(s) 255
ScrFI CCNGG 1 cut(s) 56
SduI GDGCHC 1 cut(s) 24
SetI ASST 3 cut(s) 50, 159, 294
SfaNI GCATC 2 cut(s) 290, 339
Sse9I AATT 2 cut(s) 214, 441
SsiI CCGC 1 cut(s) 257
SspMI CTAG 1 cut(s) 425
StyD4I CCNGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 224
TaqI TCGA 2 cut(s) 99, 117
TasI AATT 2 cut(s) 214, 441
TatI WGTACW 2 cut(s) 303, 427
Tru1I TTAA 1 cut(s) 296
Tru9I TTAA 1 cut(s) 296
TscAI CASTG 1 cut(s) 173
TseFI GTSAC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 244
TspRI CASTG 1 cut(s) 173
Van91I CCANNNNNTGG 1 cut(s) 216
VneI GTGCAC 1 cut(s) 20
XceI RCATGY 1 cut(s) 91
XspI CTAG 1 cut(s) 425
ZrmI AGTACT 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.