Rmu_sc0036321.1_g000001

Protein of unknown function (DUF2781)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036321.1
OG0001495
Physical Location & Seq
Reverse (-)
2 .. 317
316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036321.1_g000001.1.cds

Sequence Viewer

Length: 316 bp
atggggtctcttgttaagctcattgatgctttgctcttcctcttgctcctcgcgatcgcttttgaaaccccattgattgaagggcaagcatgtctccctatcaccctatacccagattttctcgtcgaactccggagctggtacgcaggagaagttggtgactacctcatgactgagacgccggatttctacgtcgggatcatatgggttgagcttctttttcaatggcctctggtgcttgtgaatctttatggcattttagctgggaagcattggttcaacaccacgtgcttgagttatggcatttctctattca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2781

Protein Analysis

105

Amino Acids

11.92

Weight (kDa)

4.14

Isoelectric Point (pI)

26.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 53
AccIII TCCGGA 1 cut(s) 132
AclWI GGATC 1 cut(s) 206
AcvI CACGTG 1 cut(s) 288
AcyI GRCGYC 1 cut(s) 179
AdeI CACNNNGTG 1 cut(s) 288
AfaI GTAC 1 cut(s) 143
AgsI TTSAA 4 cut(s) 65, 80, 224, 280
AluBI AGCT 4 cut(s) 19, 138, 214, 263
AluI AGCT 4 cut(s) 19, 138, 214, 263
Alw26I GTCTC 3 cut(s) 12, 98, 170
AlwI GGATC 1 cut(s) 206
Aor13HI TCCGGA 1 cut(s) 132
AoxI GGCC 1 cut(s) 227
AsiSI GCGATCGC 1 cut(s) 57
AsuHPI GGTGA 2 cut(s) 94, 170
BbrPI CACGTG 1 cut(s) 288
BcoDI GTCTC 3 cut(s) 12, 98, 170
BmsI GCATC 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 313
BsaAI YACGTR 1 cut(s) 288
BsaHI GRCGYC 1 cut(s) 179
BsaI GGTCTC 1 cut(s) 12
BsaWI WCCGGW 1 cut(s) 132
BseAI TCCGGA 1 cut(s) 132
BseMII CTCAG 1 cut(s) 165
BseRI GAGGAG 1 cut(s) 38
BseYI CCCAGC 1 cut(s) 263
Bsh1236I CGCG 1 cut(s) 53
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 1 cut(s) 229
BsiEI CGRYCG 1 cut(s) 57
BsiSI CCGG 2 cut(s) 133, 182
BsmAI GTCTC 3 cut(s) 12, 98, 170
BsmBI CGTCTC 1 cut(s) 170
BsnI GGCC 1 cut(s) 229
Bso31I GGTCTC 1 cut(s) 12
Bsp13I TCCGGA 1 cut(s) 132
Bsp143I GATC 2 cut(s) 54, 198
Bsp68I TCGCGA 1 cut(s) 53
BspANI GGCC 1 cut(s) 229
BspCNI CTCAG 1 cut(s) 166
BspEI TCCGGA 1 cut(s) 132
BspFNI CGCG 1 cut(s) 53
BspHI TCATGA 1 cut(s) 168
BspPI GGATC 1 cut(s) 206
BspQI GCTCTTC 1 cut(s) 41
BspTNI GGTCTC 1 cut(s) 12
BssMI GATC 2 cut(s) 54, 198
BssNI GRCGYC 1 cut(s) 179
Bst6I CTCTTC 1 cut(s) 41
BstACI GRCGYC 1 cut(s) 179
BstBAI YACGTR 1 cut(s) 288
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 1 cut(s) 174
BstFNI CGCG 1 cut(s) 53
BstKTI GATC 2 cut(s) 57, 201
BstMAI GTCTC 3 cut(s) 12, 98, 170
BstMBI GATC 2 cut(s) 54, 198
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstNSI RCATGY 1 cut(s) 93
BstUI CGCG 1 cut(s) 53
BsuRI GGCC 1 cut(s) 229
BtuMI TCGCGA 1 cut(s) 53
Cac8I GCNNGC 1 cut(s) 87
CciI TCATGA 1 cut(s) 168
CseI GACGC 1 cut(s) 187
Csp6I GTAC 1 cut(s) 142
CviAII CATG 2 cut(s) 90, 169
CviJI RGCY 5 cut(s) 19, 138, 214, 229, 263
CviKI_1 RGCY 5 cut(s) 19, 138, 214, 229, 263
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 1 cut(s) 174
DpnI GATC 2 cut(s) 56, 200
DpnII GATC 2 cut(s) 54, 198
DraIII CACNNNGTG 1 cut(s) 288
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco31I GGTCTC 1 cut(s) 12
Eco72I CACGTG 1 cut(s) 288
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 2 cut(s) 93, 172
FaiI YATR 7 cut(s) 91, 109, 170, 203, 205, 252, 300
FatI CATG 2 cut(s) 89, 168
FauNDI CATATG 1 cut(s) 203
GsaI CCCAGC 1 cut(s) 267
HaeIII GGCC 1 cut(s) 229
HapII CCGG 2 cut(s) 133, 182
HgaI GACGC 1 cut(s) 187
Hin1I GRCGYC 1 cut(s) 179
Hin1II CATG 2 cut(s) 93, 172
HinfI GANTC 1 cut(s) 244
HpaII CCGG 2 cut(s) 133, 182
HphI GGTGA 2 cut(s) 94, 170
Hpy188III TCNNGA 4 cut(s) 52, 133, 169, 196
Hpy99I CGWCG 2 cut(s) 128, 197
HpyAV CCTTC 1 cut(s) 74
HpyCH4IV ACGT 2 cut(s) 192, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 2 cut(s) 192, 287
Hsp92I GRCGYC 1 cut(s) 179
Hsp92II CATG 2 cut(s) 93, 172
Kpn2I TCCGGA 1 cut(s) 132
Kzo9I GATC 2 cut(s) 54, 198
LguI GCTCTTC 1 cut(s) 41
LmnI GCTCC 2 cut(s) 51, 135
LpnPI CCDG 7 cut(s) 124, 126, 132, 146, 195, 218, 249
LweI GCATC 1 cut(s) 16
MaeII ACGT 2 cut(s) 192, 287
MaeIII GTNAC 1 cut(s) 158
MalI GATC 2 cut(s) 56, 200
MboI GATC 2 cut(s) 54, 198
MboII GAAGA 1 cut(s) 28
MnlI CCTC 4 cut(s) 50, 59, 176, 240
MroI TCCGGA 1 cut(s) 132
MseI TTAA 1 cut(s) 15
MspI CCGG 2 cut(s) 133, 182
MvnI CGCG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 235
NdeI CATATG 1 cut(s) 203
NdeII GATC 2 cut(s) 54, 198
NlaIII CATG 2 cut(s) 93, 172
NmuCI GTSAC 1 cut(s) 158
NruI TCGCGA 1 cut(s) 53
NspI RCATGY 1 cut(s) 93
PagI TCATGA 1 cut(s) 168
PciSI GCTCTTC 1 cut(s) 41
PfeI GAWTC 1 cut(s) 244
Ple19I CGATCG 1 cut(s) 57
PmaCI CACGTG 1 cut(s) 288
PmlI CACGTG 1 cut(s) 288
Ppu21I YACGTR 1 cut(s) 288
PspCI CACGTG 1 cut(s) 288
PspFI CCCAGC 1 cut(s) 263
PvuI CGATCG 1 cut(s) 57
RgaI GCGATCGC 1 cut(s) 57
RruI TCGCGA 1 cut(s) 53
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SapI GCTCTTC 1 cut(s) 41
SaqAI TTAA 1 cut(s) 15
Sau3AI GATC 2 cut(s) 54, 198
SetI ASST 7 cut(s) 21, 140, 168, 195, 216, 265, 290
SfaAI GCGATCGC 1 cut(s) 57
SfaNI GCATC 1 cut(s) 16
SgfI GCGATCGC 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 292
SmoI CTYRAG 1 cut(s) 292
TaiI ACGT 2 cut(s) 195, 290
TaqI TCGA 1 cut(s) 126
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TseFI GTSAC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 158
XceI RCATGY 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.