Rh2CG527800

Transmembrane protein 97-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001495
Physical Location & Seq
Forward (+)
70266776 .. 70294771
27996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG527800.1

Sequence Viewer

Length: 486 bp
ATGGCAGTTTTGCCTATGGTGCACGCGCAGTTTGTTCTGCCTCTGAGCTTCTTCCCGGAGTGGATGGTGGAGCAGAAGAACTGGTACATGCGCGAGTTCGATGACTACTTTTATGTCGAGAAGCCTGATTTCTTTATTGGTCTGGTTTTGGTTGAGCTTGTGTTCCCGTGGCCTCTCGCCCTTGCCATCTTGTACGGGATGTTGGCTTCCAAGAATTGCTACTTCTGCCTCCAAGCCTCTTTCCGGAGTGGATGGTGGAGTACAAGGTACGTCGGCGAGTTCGATGACTATTGCTTTGTGGAGAAGCCTCATTTCATCGTTGGTCTTGTCTTGGTTGAACTCAGTGGCCTCTTGCCCTTGCTAACTTGTATGGCATGTTGGCTGGAAAGTCTTGGTACAACACCACCTGCTTGGTCCATGGCGCCACTTACTTCACCAATCACCACCATGGTAAAGAATTTGCTTGATTTATCTCTTCATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2781

Protein Analysis

161

Amino Acids

18.61

Weight (kDa)

4.73

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 415
Acc36I ACCTGC 1 cut(s) 415
AccB1I GGYRCC 1 cut(s) 421
AccII CGCG 2 cut(s) 26, 93
AccIII TCCGGA 1 cut(s) 243
AcsI RAATTY 1 cut(s) 457
AcyI GRCGYC 1 cut(s) 422
AfaI GTAC 5 cut(s) 86, 194, 262, 269, 397
AfiI CCNNNNNNNGG 1 cut(s) 243
AgsI TTSAA 1 cut(s) 338
AluBI AGCT 2 cut(s) 48, 157
AluI AGCT 2 cut(s) 48, 157
Alw21I GWGCWC 1 cut(s) 24
Alw44I GTGCAC 1 cut(s) 20
Aor13HI TCCGGA 1 cut(s) 243
AoxI GGCC 2 cut(s) 170, 346
ApaLI GTGCAC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 457
ArsI GACNNNNNNTTYG 2 cut(s) 278, 310
AspLEI GCGC 3 cut(s) 28, 93, 424
AspS9I GGNCC 1 cut(s) 414
AsuC2I CCSGG 1 cut(s) 56
AsuHPI GGTGA 2 cut(s) 426, 433
AvaII GGWCC 1 cut(s) 414
BaeGI GKGCMC 1 cut(s) 24
BanI GGYRCC 1 cut(s) 421
BarI GAAGNNNNNNTAC 2 cut(s) 68, 100
Bbv12I GWGCWC 1 cut(s) 24
BccI CCATC 3 cut(s) 58, 194, 246
BcnI CCSGG 1 cut(s) 56
BfoI RGCGCY 1 cut(s) 425
BfuAI ACCTGC 1 cut(s) 415
Bme1390I CCNGG 1 cut(s) 56
Bme18I GGWCC 1 cut(s) 414
BmgT120I GGNCC 1 cut(s) 414
BmiI GGNNCC 1 cut(s) 423
BmrFI CCNGG 1 cut(s) 56
BpuMI CCSGG 1 cut(s) 56
BsaHI GRCGYC 1 cut(s) 422
BsaJI CCNNGG 3 cut(s) 167, 417, 447
BsaWI WCCGGW 1 cut(s) 243
Bsc4I CCNNNNNNNGG 1 cut(s) 243
Bse1I ACTGG 1 cut(s) 86
BseAI TCCGGA 1 cut(s) 243
BseDI CCNNGG 3 cut(s) 167, 417, 447
BseGI GGATG 3 cut(s) 69, 204, 257
BseLI CCNNNNNNNGG 1 cut(s) 243
BseMII CTCAG 2 cut(s) 35, 355
BseNI ACTGG 1 cut(s) 86
BseSI GKGCMC 1 cut(s) 24
Bsh1236I CGCG 2 cut(s) 26, 93
BshFI GGCC 2 cut(s) 172, 348
BshNI GGYRCC 1 cut(s) 421
BsiHKAI GWGCWC 1 cut(s) 24
BsiSI CCGG 2 cut(s) 56, 244
BslI CCNNNNNNNGG 1 cut(s) 243
BsnI GGCC 2 cut(s) 172, 348
Bsp1286I GDGCHC 1 cut(s) 24
Bsp13I TCCGGA 1 cut(s) 243
Bsp19I CCATGG 2 cut(s) 417, 447
BspANI GGCC 2 cut(s) 172, 348
BspCNI CTCAG 2 cut(s) 36, 354
BspEI TCCGGA 1 cut(s) 243
BspFNI CGCG 2 cut(s) 26, 93
BspLI GGNNCC 1 cut(s) 423
BspMI ACCTGC 1 cut(s) 415
BspT107I GGYRCC 1 cut(s) 421
BsrI ACTGG 1 cut(s) 86
BssECI CCNNGG 3 cut(s) 167, 417, 447
BssNI GRCGYC 1 cut(s) 422
BssT1I CCWWGG 2 cut(s) 417, 447
Bst6I CTCTTC 1 cut(s) 480
BstACI GRCGYC 1 cut(s) 422
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 2 cut(s) 44, 341
BstDSI CCRYGG 3 cut(s) 167, 417, 447
BstF5I GGATG 3 cut(s) 69, 204, 257
BstFNI CGCG 2 cut(s) 26, 93
BstH2I RGCGCY 1 cut(s) 425
BstHHI GCGC 3 cut(s) 28, 93, 424
BstMWI GCNNNNNNNGC 2 cut(s) 19, 225
BstNSI RCATGY 2 cut(s) 91, 378
BstSCI CCNGG 1 cut(s) 54
BstSLI GKGCMC 1 cut(s) 24
BstUI CGCG 2 cut(s) 26, 93
BstXI CCANNNNNNTGG 1 cut(s) 411
BsuRI GGCC 2 cut(s) 172, 348
BtgI CCRYGG 3 cut(s) 167, 417, 447
BtsCI GGATG 3 cut(s) 69, 204, 257
BtsIMutI CAGTG 1 cut(s) 349
BveI ACCTGC 1 cut(s) 415
Cac8I GCNNGC 1 cut(s) 24
CfoI GCGC 3 cut(s) 28, 93, 424
Cfr13I GGNCC 1 cut(s) 414
Csp6I GTAC 5 cut(s) 85, 193, 261, 268, 396
CviAII CATG 4 cut(s) 88, 375, 418, 448
CviJI RGCY 9 cut(s) 48, 124, 157, 172, 206, 236, 307, 348, 382
CviKI_1 RGCY 9 cut(s) 48, 124, 157, 172, 206, 236, 307, 348, 382
CviQI GTAC 5 cut(s) 85, 193, 261, 268, 396
DdeI CTNAG 2 cut(s) 44, 341
DinI GGCGCC 1 cut(s) 423
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Eco130I CCWWGG 2 cut(s) 417, 447
Eco47I GGWCC 1 cut(s) 414
EcoT14I CCWWGG 2 cut(s) 417, 447
EgeI GGCGCC 1 cut(s) 423
EheI GGCGCC 1 cut(s) 423
ErhI CCWWGG 2 cut(s) 417, 447
FaeI CATG 4 cut(s) 91, 378, 421, 451
FatI CATG 4 cut(s) 87, 374, 417, 447
FokI GGATG 3 cut(s) 76, 211, 264
GlaI GCGC 3 cut(s) 27, 92, 423
HaeII RGCGCY 1 cut(s) 425
HaeIII GGCC 2 cut(s) 172, 348
HapII CCGG 2 cut(s) 56, 244
HhaI GCGC 3 cut(s) 28, 93, 424
Hin1I GRCGYC 1 cut(s) 422
Hin1II CATG 4 cut(s) 91, 378, 421, 451
Hin6I GCGC 3 cut(s) 26, 91, 422
HinP1I GCGC 3 cut(s) 26, 91, 422
HpaII CCGG 2 cut(s) 56, 244
HphI GGTGA 2 cut(s) 426, 433
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 2 cut(s) 118, 244
Hpy8I GTNNAC 1 cut(s) 22
Hpy99I CGWCG 1 cut(s) 275
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 1 cut(s) 22
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 225
HpyF3I CTNAG 2 cut(s) 44, 341
HpySE526I ACGT 1 cut(s) 270
Hsp92I GRCGYC 1 cut(s) 422
Hsp92II CATG 4 cut(s) 91, 378, 421, 451
HspAI GCGC 3 cut(s) 26, 91, 422
KasI GGCGCC 1 cut(s) 421
Kpn2I TCCGGA 1 cut(s) 243
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 7 cut(s) 67, 69, 128, 138, 257, 368, 420
MaeII ACGT 1 cut(s) 270
MboII GAAGA 3 cut(s) 43, 88, 467
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 2 cut(s) 214, 457
Mly113I GGCGCC 1 cut(s) 422
MnlI CCTC 6 cut(s) 51, 183, 239, 247, 318, 359
MroI TCCGGA 1 cut(s) 243
MslI CAYNNNNRTG 1 cut(s) 446
MspI CCGG 2 cut(s) 56, 244
MspR9I CCNGG 1 cut(s) 56
MvnI CGCG 2 cut(s) 26, 93
MwoI GCNNNNNNNGC 2 cut(s) 19, 225
NarI GGCGCC 1 cut(s) 422
NciI CCSGG 1 cut(s) 56
NcoI CCATGG 2 cut(s) 417, 447
NlaIII CATG 4 cut(s) 91, 378, 421, 451
NlaIV GGNNCC 1 cut(s) 423
NspI RCATGY 2 cut(s) 91, 378
PaqCI CACCTGC 1 cut(s) 415
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PfoI TCCNGGA 1 cut(s) 54
PluTI GGCGCC 1 cut(s) 425
PspN4I GGNNCC 1 cut(s) 423
PspPI GGNCC 1 cut(s) 414
RsaI GTAC 5 cut(s) 86, 194, 262, 269, 397
RsaNI GTAC 5 cut(s) 85, 193, 261, 268, 396
RseI CAYNNNNRTG 1 cut(s) 446
Sau96I GGNCC 1 cut(s) 414
ScrFI CCNGG 1 cut(s) 56
SduI GDGCHC 1 cut(s) 24
SetI ASST 5 cut(s) 50, 159, 269, 273, 409
SfoI GGCGCC 1 cut(s) 423
SinI GGWCC 1 cut(s) 414
SmiMI CAYNNNNRTG 1 cut(s) 446
Sse9I AATT 2 cut(s) 214, 457
SspDI GGCGCC 1 cut(s) 421
StyD4I CCNGG 1 cut(s) 54
StyI CCWWGG 2 cut(s) 417, 447
TaiI ACGT 1 cut(s) 273
TaqI TCGA 3 cut(s) 99, 117, 282
TasI AATT 2 cut(s) 214, 457
TatI WGTACW 1 cut(s) 260
TscAI CASTG 1 cut(s) 349
TspDTI ATGAA 2 cut(s) 304, 467
TspRI CASTG 1 cut(s) 349
VneI GTGCAC 1 cut(s) 20
VpaK11BI GGWCC 1 cut(s) 414
XapI RAATTY 1 cut(s) 457
XceI RCATGY 2 cut(s) 91, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.