Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001380

Physical Location & Seq

Genomic Coordinates Forward (+)

12010879 .. 12012547

Gene Structure 1669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G33120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAAGACGATTCTTTCTTCCGAAACGATGGACATCCCCGACAGTGTTACCATCAAGGTTCACGCTAAAGTGATCGAAGTCGAAGGACCTCGCGGGAAGCTTGTTCGCGATTTCAAGCATCTCAACCTCGATTTCCAGCTGATCAAGGATCCAGAGACTGGAAAGAAGAAGCTTAAGATCGATTCGTGGTTTGGAACACGCAAAACCAGCGCCTCCATCAGAACCGCTCTTAGCCACGTCGATAACTTGATCTCCGGTGTTACCAGAGGTTTCCGTTACAAGATGAGGTTCGTGTACGCCCATTTTCCCATCAACGCCTCCATCGGCGGTGACGGAAAGTCTATCGAGATCCGTAACTTCCTTGGCGAGAAGAAGGTGAGGAAGGTAGAGATGTTGGATGGTGTAACCATTGTTCGATCTGAGAAGGTGAAGGATGAGATTGTTCTTGACGGTAACGATATCGAGCTTGTTTCAAGGTCGTGCGCTCTGATCAACCAGAAATGTCACGTGAAGAAGAAGGATATCAGGAAGTTCCTTGACGGTATCTATGTTAGCGAGAAAAGCAAGATCGTAGAGGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009955 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048856 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

194

Amino Acids

22.02

Weight (kDa)

9.48

Isoelectric Point (pI)

24.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6	PF00347	12 - 90	1e-06	Ribosomal protein L6
Ribosomal_L6	PF00347	102 - 181	4.4e-14	Ribosomal protein L6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33120 AT1G33140 AT4G10450 AT4G10450
fragaria_vesca	FvH4_5g10230 FvH4_7g33110
malus_domestica	MD01G1230300.v1.1 MD07G1302000.v1.1 MD16G1260300.v1.1
prunus_persica	Prupe.2G321000_v2.0.a1 Prupe.5G136400_v2.0.a1
pyrus_communis	pycom01g23830 pycom07g09170 pycom07g27520 pycom12g07060
rosa_chinensis	RchiOBHm_Chr1g0334541 RchiOBHm_Chr1g0334651 RchiOBHm_Chr1g0383161 RchiOBHm_Chr2g0169651 RchiOBHm_Chr3g0462551 RchiOBHm_Chr7g0187991
rosa_laevigata	RLG00000004736 RLG00000026125
rosa_multiflora	Rmu_sc0003624.1_g000019 Rmu_sc0005044.1_g000024 Rmu_sc0008563.1_g000005 Rmu_sc0013280.1_g000007 Rmu_sc0023940.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081920 Rroxscaffold_3G00266830 Rroxscaffold_4G00277530
rosa_rugosa	Rorug01G0126100 Rorug01G0439300
rosa_samantha	Rh1AG139700 Rh1AG464900 Rh1BG422200 Rh1CG131600 Rh1CG435500 Rh1DG143700 Rh1DG153800 Rh1DG454900 Rh3AG115500 Rh3BG118900 Rh3CG122300 Rh7AG091500 Rh7BG093000 Rh7CG092300 Rh7DG093700
rosa_wichuraiana	Rw1G009540 Rw1G009550 Rw2G050900 Rw3G009780 Rw7G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	158
AccBSI	CCGCTC	1 cut(s)	227
AccII	CGCG	2 cut(s)	93, 108
AciI	CCGC	3 cut(s)	93, 225, 327
AclWI	GGATC	3 cut(s)	143, 156, 343
AcvI	CACGTG	1 cut(s)	508
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	1 cut(s)	158
AflII	CTTAAG	1 cut(s)	173
AgsI	TTSAA	2 cut(s)	115, 474
AhdI	GACNNNNNGTC	1 cut(s)	337
AjiI	CACGTC	1 cut(s)	238
AluBI	AGCT	4 cut(s)	100, 139, 172, 466
AluI	AGCT	4 cut(s)	100, 139, 172, 466
Alw26I	GTCTC	1 cut(s)	149
AlwI	GGATC	3 cut(s)	143, 156, 343
AlwNI	CAGNNNCTG	1 cut(s)	158
AspLEI	GCGC	2 cut(s)	212, 485
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	3 cut(s)	341, 388, 439
AvaII	GGWCC	1 cut(s)	86
BamHI	GGATCC	1 cut(s)	148
BbrPI	CACGTG	1 cut(s)	508
BbsI	GAAGAC	1 cut(s)	11
BccI	CCATC	6 cut(s)	22, 59, 224, 317, 329, 392
BclI	TGATCA	2 cut(s)	141, 489
BcoDI	GTCTC	1 cut(s)	149
BfoI	RGCGCY	1 cut(s)	213
BfrI	CTTAAG	1 cut(s)	173
Bme18I	GGWCC	1 cut(s)	86
BmeRI	GACNNNNNGTC	1 cut(s)	337
BmgBI	CACGTC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	150
BmsI	GCATC	1 cut(s)	127
BpiI	GAAGAC	1 cut(s)	11
Bsa29I	ATCGAT	1 cut(s)	180
BsaAI	YACGTR	1 cut(s)	508
BsaBI	GATNNNNATC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	361
BsaWI	WCCGGW	1 cut(s)	254
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	163
Bse8I	GATNNNNATC	1 cut(s)	32
BseCI	ATCGAT	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	3 cut(s)	33, 403, 439
BseJI	GATNNNNATC	1 cut(s)	32
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	1 cut(s)	163
Bsh1236I	CGCG	2 cut(s)	93, 108
BshVI	ATCGAT	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	149
Bsp143I	GATC	9 cut(s)	72, 141, 148, 177, 249, 348, 416, 489, 567
Bsp68I	TCGCGA	1 cut(s)	108
BspACI	CCGC	3 cut(s)	93, 225, 327
BspCNI	CTCAG	1 cut(s)	412
BspDI	ATCGAT	1 cut(s)	180
BspFNI	CGCG	2 cut(s)	93, 108
BspLI	GGNNCC	1 cut(s)	150
BspPI	GGATC	3 cut(s)	143, 156, 343
BspTI	CTTAAG	1 cut(s)	173
BsrBI	CCGCTC	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	163
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	9 cut(s)	72, 141, 148, 177, 249, 348, 416, 489, 567
BssT1I	CCWWGG	1 cut(s)	361
Bst4CI	ACNGT	3 cut(s)	44, 452, 542
BstAFI	CTTAAG	1 cut(s)	173
BstBAI	YACGTR	1 cut(s)	508
BstDEI	CTNAG	2 cut(s)	230, 420
BstF5I	GGATG	3 cut(s)	33, 403, 439
BstFNI	CGCG	2 cut(s)	93, 108
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	2 cut(s)	212, 485
BstKTI	GATC	9 cut(s)	75, 144, 151, 180, 252, 351, 419, 492, 570
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	9 cut(s)	72, 141, 148, 177, 249, 348, 416, 489, 567
BstMWI	GCNNNNNNNGC	2 cut(s)	207, 561
BstUI	CGCG	2 cut(s)	93, 108
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	2 cut(s)	148, 348
BstYI	RGATCY	2 cut(s)	148, 348
Bsu15I	ATCGAT	1 cut(s)	180
BsuTUI	ATCGAT	1 cut(s)	180
BtrI	CACGTC	1 cut(s)	238
BtsCI	GGATG	3 cut(s)	33, 403, 439
BtsIMutI	CAGTG	1 cut(s)	49
BtuMI	TCGCGA	1 cut(s)	108
CaiI	CAGNNNCTG	1 cut(s)	158
CfoI	GCGC	2 cut(s)	212, 485
Cfr13I	GGNCC	1 cut(s)	86
ClaI	ATCGAT	1 cut(s)	180
Csp6I	GTAC	1 cut(s)	295
CviJI	RGCY	5 cut(s)	100, 139, 172, 234, 466
CviKI_1	RGCY	5 cut(s)	100, 139, 172, 234, 466
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	2 cut(s)	230, 420
DpnI	GATC	9 cut(s)	74, 143, 150, 179, 251, 350, 418, 491, 569
DpnII	GATC	9 cut(s)	72, 141, 148, 177, 249, 348, 416, 489, 567
DriI	GACNNNNNGTC	1 cut(s)	337
Eam1105I	GACNNNNNGTC	1 cut(s)	337
Eco130I	CCWWGG	1 cut(s)	361
Eco32I	GATATC	2 cut(s)	460, 523
Eco47I	GGWCC	1 cut(s)	86
Eco72I	CACGTG	1 cut(s)	508
EcoO109I	RGGNCCY	1 cut(s)	86
EcoRV	GATATC	2 cut(s)	460, 523
EcoT14I	CCWWGG	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	361
FaiI	YATR	1 cut(s)	549
FauI	CCCGC	1 cut(s)	86
FbaI	TGATCA	2 cut(s)	141, 489
FokI	GGATG	3 cut(s)	20, 410, 446
GlaI	GCGC	2 cut(s)	211, 484
HaeII	RGCGCY	1 cut(s)	213
HapII	CCGG	1 cut(s)	255
HhaI	GCGC	2 cut(s)	212, 485
Hin6I	GCGC	2 cut(s)	210, 483
HinP1I	GCGC	2 cut(s)	210, 483
HindIII	AAGCTT	2 cut(s)	98, 170
HinfI	GANTC	2 cut(s)	10, 182
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	3 cut(s)	341, 388, 439
Hpy166II	GTNNAC	2 cut(s)	61, 295
Hpy188I	TCNGA	4 cut(s)	22, 221, 421, 489
Hpy188III	TCNNGA	5 cut(s)	107, 152, 346, 446, 526
Hpy8I	GTNNAC	2 cut(s)	61, 295
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	6 cut(s)	77, 367, 376, 418, 424, 511
HpyCH4III	ACNGT	3 cut(s)	44, 452, 542
HpyCH4IV	ACGT	2 cut(s)	237, 507
HpyF10VI	GCNNNNNNNGC	2 cut(s)	207, 561
HpyF3I	CTNAG	2 cut(s)	230, 420
HpySE526I	ACGT	2 cut(s)	237, 507
HspAI	GCGC	2 cut(s)	210, 483
Ksp22I	TGATCA	2 cut(s)	141, 489
Kzo9I	GATC	9 cut(s)	72, 141, 148, 177, 249, 348, 416, 489, 567
LpnPI	CCDG	8 cut(s)	144, 149, 165, 220, 268, 277, 509, 511
LweI	GCATC	1 cut(s)	127
MaeII	ACGT	2 cut(s)	237, 507
MaeIII	GTNAC	8 cut(s)	46, 259, 275, 329, 353, 403, 452, 503
MalI	GATC	9 cut(s)	74, 143, 150, 179, 251, 350, 418, 491, 569
MbiI	CCGCTC	1 cut(s)	227
MboI	GATC	9 cut(s)	72, 141, 148, 177, 249, 348, 416, 489, 567
MboII	GAAGA	6 cut(s)	9, 16, 178, 382, 523, 526
MflI	RGATCY	2 cut(s)	148, 348
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	8 cut(s)	99, 137, 223, 260, 279, 328, 372, 568
MseI	TTAA	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	139
MspCI	CTTAAG	1 cut(s)	173
MspI	CCGG	1 cut(s)	255
MvnI	CGCG	2 cut(s)	93, 108
MwoI	GCNNNNNNNGC	2 cut(s)	207, 561
NdeII	GATC	9 cut(s)	72, 141, 148, 177, 249, 348, 416, 489, 567
NlaIV	GGNNCC	1 cut(s)	150
NmuCI	GTSAC	2 cut(s)	329, 503
NruI	TCGCGA	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	10, 182
PflMI	CCANNNNNTGG	1 cut(s)	158
PmaCI	CACGTG	1 cut(s)	508
PmlI	CACGTG	1 cut(s)	508
Ppu21I	YACGTR	1 cut(s)	508
PpuMI	RGGWCCY	1 cut(s)	86
Psp5II	RGGWCCY	1 cut(s)	86
PspCI	CACGTG	1 cut(s)	508
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	86
PspPPI	RGGWCCY	1 cut(s)	86
PsrI	GAACNNNNNNTAC	2 cut(s)	396, 428
PstNI	CAGNNNCTG	1 cut(s)	158
PsuI	RGATCY	2 cut(s)	148, 348
PvuII	CAGCTG	1 cut(s)	139
RruI	TCGCGA	1 cut(s)	108
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SaqAI	TTAA	1 cut(s)	174
Sau3AI	GATC	9 cut(s)	72, 141, 148, 177, 249, 348, 416, 489, 567
Sau96I	GGNCC	1 cut(s)	86
SfaNI	GCATC	1 cut(s)	127
SinI	GGWCC	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SsiI	CCGC	3 cut(s)	93, 225, 327
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	3 cut(s)	44, 452, 542
TaiI	ACGT	2 cut(s)	240, 510
TaqI	TCGA	8 cut(s)	75, 81, 129, 180, 240, 345, 415, 462
TfiI	GAWTC	2 cut(s)	10, 182
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	1 cut(s)	49
TseFI	GTSAC	2 cut(s)	329, 503
Tsp45I	GTSAC	2 cut(s)	329, 503
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	3 cut(s)	263, 341, 348
TspRI	CASTG	1 cut(s)	49
Van91I	CCANNNNNTGG	1 cut(s)	158
Vha464I	CTTAAG	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.