Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001380

Physical Location & Seq

Genomic Coordinates Reverse (-)

4872514 .. 4873417

Gene Structure 904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00081920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGCTCGACGGCGTGACGATCTTGCGATCGGAGAATGTGAAGGATGAGCTGGTTTTGGATGGGAATGACATCGATTTGGTTTCAAGGTCGGCGGCATTGATCAACCGTAAGTGTCATGTGAAGAAGAAGGACATCAAGAAGTTTCTAAATGGGATCTACGTTAGCGAGAGGAGCACCATTGCCACCGAGATGGATGAAGAAGGATCGATTAGTCCAGTCGGTTACTTGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009955 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048856 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

77

Amino Acids

8.55

Weight (kDa)

5.28

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6	PF00347	2 - 51	3.2e-06	Ribosomal protein L6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33120 AT1G33140 AT4G10450 AT4G10450
fragaria_vesca	FvH4_5g10230 FvH4_7g33110
malus_domestica	MD01G1230300.v1.1 MD07G1302000.v1.1 MD16G1260300.v1.1
prunus_persica	Prupe.2G321000_v2.0.a1 Prupe.5G136400_v2.0.a1
pyrus_communis	pycom01g23830 pycom07g09170 pycom07g27520 pycom12g07060
rosa_chinensis	RchiOBHm_Chr1g0334541 RchiOBHm_Chr1g0334651 RchiOBHm_Chr1g0383161 RchiOBHm_Chr2g0169651 RchiOBHm_Chr3g0462551 RchiOBHm_Chr7g0187991
rosa_laevigata	RLG00000004736 RLG00000026125
rosa_multiflora	Rmu_sc0003624.1_g000019 Rmu_sc0005044.1_g000024 Rmu_sc0008563.1_g000005 Rmu_sc0013280.1_g000007 Rmu_sc0023940.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081920 Rroxscaffold_3G00266830 Rroxscaffold_4G00277530
rosa_rugosa	Rorug01G0126100 Rorug01G0439300
rosa_samantha	Rh1AG139700 Rh1AG464900 Rh1BG422200 Rh1CG131600 Rh1CG435500 Rh1DG143700 Rh1DG153800 Rh1DG454900 Rh3AG115500 Rh3BG118900 Rh3CG122300 Rh7AG091500 Rh7BG093000 Rh7CG092300 Rh7DG093700
rosa_wichuraiana	Rw1G009540 Rw1G009550 Rw2G050900 Rw3G009780 Rw7G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	92
AclWI	GGATC	2 cut(s)	161, 211
AgsI	TTSAA	1 cut(s)	84
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
Alw21I	GWGCWC	1 cut(s)	176
AlwI	GGATC	2 cut(s)	161, 211
Bbv12I	GWGCWC	1 cut(s)	176
BccI	CCATC	2 cut(s)	53, 184
BceAI	ACGGC	1 cut(s)	25
BclI	TGATCA	1 cut(s)	99
BfaI	CTAG	1 cut(s)	232
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
Bsa29I	ATCGAT	2 cut(s)	72, 206
Bse1I	ACTGG	1 cut(s)	215
Bse3DI	GCAATG	1 cut(s)	177
BseCI	ATCGAT	2 cut(s)	72, 206
BseGI	GGATG	3 cut(s)	49, 64, 199
BseMI	GCAATG	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	215
BseRI	GAGGAG	1 cut(s)	184
Bsh1285I	CGRYCG	1 cut(s)	29
BshVI	ATCGAT	2 cut(s)	72, 206
BsiEI	CGRYCG	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	5 cut(s)	18, 26, 99, 153, 203
BspACI	CCGC	1 cut(s)	92
BspDI	ATCGAT	2 cut(s)	72, 206
BspPI	GGATC	2 cut(s)	161, 211
BsrDI	GCAATG	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	215
BssMI	GATC	5 cut(s)	18, 26, 99, 153, 203
Bst4CI	ACNGT	1 cut(s)	107
BstF5I	GGATG	3 cut(s)	49, 64, 199
BstKTI	GATC	5 cut(s)	21, 29, 102, 156, 206
BstMBI	GATC	5 cut(s)	18, 26, 99, 153, 203
BstMCI	CGRYCG	1 cut(s)	29
BstMWI	GCNNNNNNNGC	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	153
BstXI	CCANNNNNNTGG	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	153
Bsu15I	ATCGAT	2 cut(s)	72, 206
BsuTUI	ATCGAT	2 cut(s)	72, 206
BtsCI	GGATG	3 cut(s)	49, 64, 199
ClaI	ATCGAT	2 cut(s)	72, 206
CviAII	CATG	1 cut(s)	116
CviJI	RGCY	1 cut(s)	49
CviKI_1	RGCY	1 cut(s)	49
DpnI	GATC	5 cut(s)	20, 28, 101, 155, 205
DpnII	GATC	5 cut(s)	18, 26, 99, 153, 203
FaeI	CATG	1 cut(s)	119
FaiI	YATR	1 cut(s)	117
FatI	CATG	1 cut(s)	115
FbaI	TGATCA	1 cut(s)	99
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	3 cut(s)	56, 71, 206
Fsp4HI	GCNGC	1 cut(s)	93
FspBI	CTAG	1 cut(s)	232
GluI	GCNGC	1 cut(s)	93
Hin1II	CATG	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	1 cut(s)	136
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	3 cut(s)	34, 121, 194
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4IV	ACGT	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	1 cut(s)	171
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	119
Ksp22I	TGATCA	1 cut(s)	99
Kzo9I	GATC	5 cut(s)	18, 26, 99, 153, 203
LmnI	GCTCC	1 cut(s)	171
LpnPI	CCDG	2 cut(s)	35, 228
MaeI	CTAG	1 cut(s)	232
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	2 cut(s)	13, 221
MalI	GATC	5 cut(s)	20, 28, 101, 155, 205
MboI	GATC	5 cut(s)	18, 26, 99, 153, 203
MboII	GAAGA	3 cut(s)	133, 136, 209
MflI	RGATCY	1 cut(s)	153
MhlI	GDGCHC	1 cut(s)	176
MnlI	CCTC	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	171
NdeII	GATC	5 cut(s)	18, 26, 99, 153, 203
NlaIII	CATG	1 cut(s)	119
NmuCI	GTSAC	1 cut(s)	13
PkrI	GCNGC	1 cut(s)	94
Ple19I	CGATCG	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	153
PvuI	CGATCG	1 cut(s)	29
RseI	CAYNNNNRTG	1 cut(s)	188
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	5 cut(s)	18, 26, 99, 153, 203
SduI	GDGCHC	1 cut(s)	176
SetI	ASST	4 cut(s)	51, 89, 162, 233
SmiMI	CAYNNNNRTG	1 cut(s)	188
SsiI	CCGC	1 cut(s)	92
SspMI	CTAG	1 cut(s)	232
TaaI	ACNGT	1 cut(s)	107
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	3 cut(s)	6, 72, 206
TauI	GCSGC	1 cut(s)	95
TseFI	GTSAC	1 cut(s)	13
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	1 cut(s)	210
XspI	CTAG	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.