Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001380

Physical Location & Seq

Genomic Coordinates Reverse (-)

672344 .. 675935

Gene Structure 3592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026125

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGAAGGGATTGACGTTGGCATGGAGATGGTGGTGGTTCCTGGACACGTGACAACACAGGTGACTACTGAGATGCATGATGGGTTGCATGGACTTGGGGAAGCTCATGCGTCACATCTTGACGCTTCAATGGTGCCGTCCAATCCGGTGCCTCGTGTGGTTGCCCTGGACAATAAGAAGGTCGAAAAGAAACAGTTTCTGAGTGTGAAGGTTATGGACGAGGCTGATGTAGATGGCGTGGGTGAGGCTGGACCCATGTTGATACATTCTGAAGTGGAGAGTGCAATGAAGAAAGTCCAATTTCACCGTATCCACCTATTGAGGAACAGAGATTCATTGAAACAGAATCTCATCACCGGAGTCACCAAGGGGTACCGGTACAAGATGAGGTTCGTGTACGCTCATTTTCCCATCAACGCTTCGATCACTAATGGAGCCAAGTCTATTGAGATCAGGAACTTTCTCGGTGAGAAGAAGGTGAGAAAGGTGGATATGCTTGATGGTGTTTCTATCCTCCGATCTGAAAAGGTGAAGGATGAGCTGATATTGGATGGCAATGATATTGAACTTGTTTCTCGGTCTTGTGCTCTGATCAACCAGAAATGCCATGTCAAGAACAAGGATATCAGGAAGTTTCTTGATGGTATCTATGTTAGCGAGAGGGCAACCATCAGTACCGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009955 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048856 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

229

Amino Acids

25.46

Weight (kDa)

7.17

Isoelectric Point (pI)

31.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6	PF00347	146 - 215	5e-11	Ribosomal protein L6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33120 AT1G33140 AT4G10450 AT4G10450
fragaria_vesca	FvH4_5g10230 FvH4_7g33110
malus_domestica	MD01G1230300.v1.1 MD07G1302000.v1.1 MD16G1260300.v1.1
prunus_persica	Prupe.2G321000_v2.0.a1 Prupe.5G136400_v2.0.a1
pyrus_communis	pycom01g23830 pycom07g09170 pycom07g27520 pycom12g07060
rosa_chinensis	RchiOBHm_Chr1g0334541 RchiOBHm_Chr1g0334651 RchiOBHm_Chr1g0383161 RchiOBHm_Chr2g0169651 RchiOBHm_Chr3g0462551 RchiOBHm_Chr7g0187991
rosa_laevigata	RLG00000004736 RLG00000026125
rosa_multiflora	Rmu_sc0003624.1_g000019 Rmu_sc0005044.1_g000024 Rmu_sc0008563.1_g000005 Rmu_sc0013280.1_g000007 Rmu_sc0023940.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081920 Rroxscaffold_3G00266830 Rroxscaffold_4G00277530
rosa_rugosa	Rorug01G0126100 Rorug01G0439300
rosa_samantha	Rh1AG139700 Rh1AG464900 Rh1BG422200 Rh1CG131600 Rh1CG435500 Rh1DG143700 Rh1DG153800 Rh1DG454900 Rh3AG115500 Rh3BG118900 Rh3CG122300 Rh7AG091500 Rh7BG093000 Rh7CG092300 Rh7DG093700
rosa_wichuraiana	Rw1G009540 Rw1G009550 Rw2G050900 Rw3G009780 Rw7G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	372
AccB1I	GGYRCC	3 cut(s)	133, 148, 372
AcuI	CTGAAG	1 cut(s)	291
AcvI	CACGTG	1 cut(s)	49
AfaI	GTAC	4 cut(s)	374, 380, 398, 676
AflIII	ACRYGT	1 cut(s)	46
AgeI	ACCGGT	1 cut(s)	375
AgsI	TTSAA	3 cut(s)	129, 340, 566
AjnI	CCWGG	2 cut(s)	40, 165
AluBI	AGCT	2 cut(s)	104, 541
AluI	AGCT	2 cut(s)	104, 541
Alw21I	GWGCWC	1 cut(s)	589
AlwNI	CAGNNNCTG	1 cut(s)	199
AsiGI	ACCGGT	1 cut(s)	375
Asp718I	GGTACC	1 cut(s)	372
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	8 cut(s)	73, 254, 296, 346, 355, 479, 490, 541
AvaII	GGWCC	1 cut(s)	251
BanI	GGYRCC	3 cut(s)	133, 148, 372
BauI	CACGAG	1 cut(s)	153
BbrPI	CACGTG	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	589
BccI	CCATC	8 cut(s)	22, 74, 227, 419, 494, 545, 635, 677
BceAI	ACGGC	1 cut(s)	121
BciT130I	CCWGG	2 cut(s)	42, 167
BciVI	GTATCC	1 cut(s)	320
BclI	TGATCA	1 cut(s)	591
BfuI	GTATCC	1 cut(s)	320
Bme1390I	CCNGG	2 cut(s)	42, 167
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	6 cut(s)	39, 135, 150, 253, 374, 436
BmrFI	CCNGG	2 cut(s)	42, 167
BmsI	GCATC	1 cut(s)	63
BsaAI	YACGTR	1 cut(s)	49
BsaJI	CCNNGG	3 cut(s)	165, 366, 678
BsaWI	WCCGGW	3 cut(s)	145, 356, 375
Bse118I	RCCGGY	1 cut(s)	375
Bse3DI	GCAATG	2 cut(s)	291, 562
BseBI	CCWGG	2 cut(s)	42, 167
BseDI	CCNNGG	3 cut(s)	165, 366, 678
BseGI	GGATG	2 cut(s)	541, 556
BseMI	GCAATG	2 cut(s)	291, 562
BseMII	CTCAG	2 cut(s)	60, 191
BshNI	GGYRCC	3 cut(s)	133, 148, 372
BshTI	ACCGGT	1 cut(s)	375
BsiHKAI	GWGCWC	1 cut(s)	589
BsiSI	CCGG	3 cut(s)	146, 357, 376
Bsp1286I	GDGCHC	1 cut(s)	589
Bsp143I	GATC	4 cut(s)	423, 450, 518, 591
BspCNI	CTCAG	2 cut(s)	61, 192
BspLI	GGNNCC	6 cut(s)	39, 135, 150, 253, 374, 436
BspT107I	GGYRCC	3 cut(s)	133, 148, 372
BsrDI	GCAATG	2 cut(s)	291, 562
BsrFI	RCCGGY	1 cut(s)	375
BssAI	RCCGGY	1 cut(s)	375
BssECI	CCNNGG	3 cut(s)	165, 366, 678
BssMI	GATC	4 cut(s)	423, 450, 518, 591
BssSI	CACGAG	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	366
Bst2BI	CACGAG	1 cut(s)	153
Bst2UI	CCWGG	2 cut(s)	42, 167
Bst4CI	ACNGT	2 cut(s)	195, 308
BstBAI	YACGTR	1 cut(s)	49
BstDEI	CTNAG	2 cut(s)	69, 200
BstF5I	GGATG	2 cut(s)	541, 556
BstKTI	GATC	4 cut(s)	426, 453, 521, 594
BstMBI	GATC	4 cut(s)	423, 450, 518, 591
BstNI	CCWGG	2 cut(s)	42, 167
BstSCI	CCNGG	2 cut(s)	40, 165
BsuI	GTATCC	1 cut(s)	320
BtsCI	GGATG	2 cut(s)	541, 556
CaiI	CAGNNNCTG	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	375
Cfr13I	GGNCC	1 cut(s)	251
CseI	GACGC	2 cut(s)	99, 131
Csp6I	GTAC	4 cut(s)	373, 379, 397, 675
CspAI	ACCGGT	1 cut(s)	375
CviAII	CATG	6 cut(s)	22, 77, 89, 107, 256, 608
CviJI	RGCY	5 cut(s)	104, 224, 248, 437, 541
CviKI_1	RGCY	5 cut(s)	104, 224, 248, 437, 541
CviQI	GTAC	4 cut(s)	373, 379, 397, 675
DdeI	CTNAG	2 cut(s)	69, 200
DpnI	GATC	4 cut(s)	425, 452, 520, 593
DpnII	GATC	4 cut(s)	423, 450, 518, 591
Eco130I	CCWWGG	1 cut(s)	366
Eco32I	GATATC	1 cut(s)	625
Eco47I	GGWCC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	291
Eco72I	CACGTG	1 cut(s)	49
EcoRII	CCWGG	2 cut(s)	40, 165
EcoRV	GATATC	1 cut(s)	625
EcoT14I	CCWWGG	1 cut(s)	366
EcoT22I	ATGCAT	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	6 cut(s)	25, 80, 92, 110, 259, 611
FaiI	YATR	9 cut(s)	23, 78, 90, 108, 215, 257, 494, 609, 651
FatI	CATG	6 cut(s)	21, 76, 88, 106, 255, 607
FbaI	TGATCA	1 cut(s)	591
FokI	GGATG	2 cut(s)	548, 563
HapII	CCGG	3 cut(s)	146, 357, 376
HgaI	GACGC	2 cut(s)	99, 131
Hin1II	CATG	6 cut(s)	25, 80, 92, 110, 259, 611
HinfI	GANTC	3 cut(s)	332, 346, 360
HpaII	CCGG	3 cut(s)	146, 357, 376
HphI	GGTGA	8 cut(s)	73, 254, 296, 346, 355, 479, 490, 541
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	5 cut(s)	201, 271, 518, 523, 591
Hpy188III	TCNNGA	5 cut(s)	119, 454, 613, 628, 638
Hpy8I	GTNNAC	1 cut(s)	397
HpyAV	CCTTC	4 cut(s)	172, 202, 469, 526
HpyCH4III	ACNGT	2 cut(s)	195, 308
HpyCH4IV	ACGT	2 cut(s)	15, 48
HpyCH4V	TGCA	3 cut(s)	76, 88, 284
HpyF3I	CTNAG	2 cut(s)	69, 200
HpySE526I	ACGT	2 cut(s)	15, 48
Hsp92II	CATG	6 cut(s)	25, 80, 92, 110, 259, 611
KpnI	GGTACC	1 cut(s)	376
Ksp22I	TGATCA	1 cut(s)	591
Kzo9I	GATC	4 cut(s)	423, 450, 518, 591
LmnI	GCTCC	1 cut(s)	434
LweI	GCATC	1 cut(s)	63
MaeII	ACGT	2 cut(s)	15, 48
MaeIII	GTNAC	4 cut(s)	49, 61, 111, 361
MalI	GATC	4 cut(s)	425, 452, 520, 593
MboI	GATC	4 cut(s)	423, 450, 518, 591
MboII	GAAGA	2 cut(s)	301, 484
MhlI	GDGCHC	1 cut(s)	589
MluCI	AATT	1 cut(s)	299
MlyI	GAGTC	1 cut(s)	369
MnlI	CCTC	8 cut(s)	162, 214, 238, 315, 381, 524, 654, 673
Mph1103I	ATGCAT	1 cut(s)	78
MslI	CAYNNNNRTG	1 cut(s)	26
MspI	CCGG	3 cut(s)	146, 357, 376
MspR9I	CCNGG	2 cut(s)	42, 167
MvaI	CCWGG	2 cut(s)	42, 167
NdeII	GATC	4 cut(s)	423, 450, 518, 591
NlaIII	CATG	6 cut(s)	25, 80, 92, 110, 259, 611
NlaIV	GGNNCC	6 cut(s)	39, 135, 150, 253, 374, 436
NmuCI	GTSAC	4 cut(s)	49, 61, 111, 361
NsiI	ATGCAT	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	332, 346
PfoI	TCCNGGA	1 cut(s)	40
PinAI	ACCGGT	1 cut(s)	375
PleI	GAGTC	1 cut(s)	368
PmaCI	CACGTG	1 cut(s)	49
PmlI	CACGTG	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	368
Ppu21I	YACGTR	1 cut(s)	49
Psp6I	CCWGG	2 cut(s)	40, 165
PspCI	CACGTG	1 cut(s)	49
PspGI	CCWGG	2 cut(s)	40, 165
PspN4I	GGNNCC	6 cut(s)	39, 135, 150, 253, 374, 436
PspPI	GGNCC	1 cut(s)	251
PstNI	CAGNNNCTG	1 cut(s)	199
RsaI	GTAC	4 cut(s)	374, 380, 398, 676
RsaNI	GTAC	4 cut(s)	373, 379, 397, 675
RseI	CAYNNNNRTG	1 cut(s)	26
Sau3AI	GATC	4 cut(s)	423, 450, 518, 591
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	1 cut(s)	369
ScrFI	CCNGG	2 cut(s)	42, 167
SduI	GDGCHC	1 cut(s)	589
SfaNI	GCATC	1 cut(s)	63
SinI	GGWCC	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	26
Sse9I	AATT	1 cut(s)	299
StyD4I	CCNGG	2 cut(s)	40, 165
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	2 cut(s)	195, 308
TaiI	ACGT	2 cut(s)	18, 51
TaqI	TCGA	2 cut(s)	183, 422
TaqII	GACCGA	1 cut(s)	567
TasI	AATT	1 cut(s)	299
TfiI	GAWTC	2 cut(s)	332, 346
TseFI	GTSAC	4 cut(s)	49, 61, 111, 361
Tsp45I	GTSAC	4 cut(s)	49, 61, 111, 361
TspDTI	ATGAA	2 cut(s)	302, 324
VpaK11BI	GGWCC	1 cut(s)	251
Zsp2I	ATGCAT	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.