Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013280.1

Orthogroup ID

OG0001380

Physical Location & Seq

Genomic Coordinates Reverse (-)

27370 .. 27660

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013280.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atgtcgaaacagtttaaaatgaagacgattttggcctcgaaggtcatgggatatcctggatggcgtcaccatcaaggtgaaggcaaaggtcatcgaggtcgaaggtccctgcgggaagctcacctcaacttcaagctagtcaccgatgactccaccggtgagaagaagctcaagatcgaggcctggttcagcaccagcaagactagtgcccccatctgcacctccctcagccatgtcagcaacctcatcaccgacatcaccaagggctaccgctatgagataattagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

96

Amino Acids

10.98

Weight (kDa)

10.12

Isoelectric Point (pI)

30.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33120 AT1G33140 AT4G10450 AT4G10450
fragaria_vesca	FvH4_5g10230 FvH4_7g33110
malus_domestica	MD01G1230300.v1.1 MD07G1302000.v1.1 MD16G1260300.v1.1
prunus_persica	Prupe.2G321000_v2.0.a1 Prupe.5G136400_v2.0.a1
pyrus_communis	pycom01g23830 pycom07g09170 pycom07g27520 pycom12g07060
rosa_chinensis	RchiOBHm_Chr1g0334541 RchiOBHm_Chr1g0334651 RchiOBHm_Chr1g0383161 RchiOBHm_Chr2g0169651 RchiOBHm_Chr3g0462551 RchiOBHm_Chr7g0187991
rosa_laevigata	RLG00000004736 RLG00000026125
rosa_multiflora	Rmu_sc0003624.1_g000019 Rmu_sc0005044.1_g000024 Rmu_sc0008563.1_g000005 Rmu_sc0013280.1_g000007 Rmu_sc0023940.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081920 Rroxscaffold_3G00266830 Rroxscaffold_4G00277530
rosa_rugosa	Rorug01G0126100 Rorug01G0439300
rosa_samantha	Rh1AG139700 Rh1AG464900 Rh1BG422200 Rh1CG131600 Rh1CG435500 Rh1DG143700 Rh1DG153800 Rh1DG454900 Rh3AG115500 Rh3BG118900 Rh3CG122300 Rh7AG091500 Rh7BG093000 Rh7CG092300 Rh7DG093700
rosa_wichuraiana	Rw1G009540 Rw1G009550 Rw2G050900 Rw3G009780 Rw7G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	112, 271
AcyI	GRCGYC	1 cut(s)	64
AgeI	ACCGGT	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	133
AhlI	ACTAGT	1 cut(s)	203
AjnI	CCWGG	2 cut(s)	55, 182
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	3 cut(s)	119, 136, 169
AluI	AGCT	3 cut(s)	119, 136, 169
AoxI	GGCC	2 cut(s)	33, 180
AsiGI	ACCGGT	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	105
AsuHPI	GGTGA	7 cut(s)	59, 89, 113, 133, 170, 241, 250
AvaII	GGWCC	1 cut(s)	105
BaeGI	GKGCMC	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	29
BbvCI	CCTCAGC	1 cut(s)	227
BccI	CCATC	3 cut(s)	54, 78, 221
BciT130I	CCWGG	2 cut(s)	57, 184
BcuI	ACTAGT	1 cut(s)	203
BfaI	CTAG	2 cut(s)	137, 204
Bme1390I	CCNGG	2 cut(s)	57, 184
Bme18I	GGWCC	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	1 cut(s)	107
BmrFI	CCNGG	2 cut(s)	57, 184
BpiI	GAAGAC	1 cut(s)	29
Bpu10I	CCTNAGC	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	261
BsaWI	WCCGGW	1 cut(s)	155
Bse118I	RCCGGY	1 cut(s)	155
BseBI	CCWGG	2 cut(s)	57, 184
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	1 cut(s)	65
BseMII	CTCAG	1 cut(s)	241
BseSI	GKGCMC	1 cut(s)	211
BsgI	GTGCAG	1 cut(s)	202
BshFI	GGCC	2 cut(s)	35, 182
BshTI	ACCGGT	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	91
BsnI	GGCC	2 cut(s)	35, 182
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	1 cut(s)	174
BspACI	CCGC	2 cut(s)	112, 271
BspANI	GGCC	2 cut(s)	35, 182
BspCNI	CTCAG	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	1 cut(s)	174
BssNI	GRCGYC	1 cut(s)	64
BssT1I	CCWWGG	1 cut(s)	261
Bst2UI	CCWGG	2 cut(s)	57, 184
Bst4CI	ACNGT	1 cut(s)	12
BstACI	GRCGYC	1 cut(s)	64
BstDEI	CTNAG	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	65
BstKTI	GATC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstNI	CCWGG	2 cut(s)	57, 184
BstSCI	CCNGG	2 cut(s)	55, 182
BstSLI	GKGCMC	1 cut(s)	211
BstV2I	GAAGAC	1 cut(s)	29
BsuRI	GGCC	2 cut(s)	35, 182
BtsCI	GGATG	1 cut(s)	65
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	105
CseI	GACGC	1 cut(s)	53
CspAI	ACCGGT	1 cut(s)	155
CviAII	CATG	2 cut(s)	46, 233
CviJI	RGCY	7 cut(s)	35, 119, 136, 169, 182, 231, 267
CviKI_1	RGCY	7 cut(s)	35, 119, 136, 169, 182, 231, 267
DdeI	CTNAG	1 cut(s)	227
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
DraI	TTTAAA	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	261
Eco147I	AGGCCT	1 cut(s)	182
Eco32I	GATATC	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	105
EcoO109I	RGGNCCY	1 cut(s)	105
EcoRII	CCWGG	2 cut(s)	55, 182
EcoRV	GATATC	1 cut(s)	53
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	2 cut(s)	49, 236
FaiI	YATR	3 cut(s)	47, 234, 276
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	2 cut(s)	45, 232
FauI	CCCGC	1 cut(s)	105
FokI	GGATG	1 cut(s)	72
FspBI	CTAG	2 cut(s)	137, 204
HaeIII	GGCC	2 cut(s)	35, 182
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	1 cut(s)	53
Hin1I	GRCGYC	1 cut(s)	64
Hin1II	CATG	2 cut(s)	49, 236
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	7 cut(s)	59, 89, 113, 133, 170, 241, 250
Hpy188III	TCNNGA	1 cut(s)	172
HpyAV	CCTTC	3 cut(s)	34, 74, 96
HpyCH4III	ACNGT	1 cut(s)	12
HpyCH4V	TGCA	1 cut(s)	219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
HpyF3I	CTNAG	1 cut(s)	227
Hsp92I	GRCGYC	1 cut(s)	64
Hsp92II	CATG	2 cut(s)	49, 236
Kzo9I	GATC	1 cut(s)	174
LpnPI	CCDG	7 cut(s)	42, 69, 122, 169, 169, 196, 208
MaeI	CTAG	2 cut(s)	137, 204
MaeIII	GTNAC	2 cut(s)	65, 139
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	2 cut(s)	34, 175
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	1 cut(s)	282
MlyI	GAGTC	1 cut(s)	143
MnlI	CCTC	7 cut(s)	46, 89, 134, 172, 232, 236, 254
MseI	TTAA	1 cut(s)	15
MslI	CAYNNNNRTG	1 cut(s)	75
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	2 cut(s)	57, 184
MvaI	CCWGG	2 cut(s)	57, 184
MwoI	GCNNNNNNNGC	1 cut(s)	237
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	2 cut(s)	49, 236
NlaIV	GGNNCC	1 cut(s)	107
NmuCI	GTSAC	2 cut(s)	65, 139
PceI	AGGCCT	1 cut(s)	182
PfoI	TCCNGGA	1 cut(s)	55
PinAI	ACCGGT	1 cut(s)	155
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PpuMI	RGGWCCY	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	105
Psp6I	CCWGG	2 cut(s)	55, 182
PspGI	CCWGG	2 cut(s)	55, 182
PspN4I	GGNNCC	1 cut(s)	107
PspPI	GGNCC	1 cut(s)	105
PspPPI	RGGWCCY	1 cut(s)	105
RseI	CAYNNNNRTG	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	15
Sau3AI	GATC	1 cut(s)	174
Sau96I	GGNCC	1 cut(s)	105
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	2 cut(s)	57, 184
SduI	GDGCHC	1 cut(s)	211
SgrAI	CRCCGGYG	1 cut(s)	155
SinI	GGWCC	1 cut(s)	105
SmiMI	CAYNNNNRTG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SpeI	ACTAGT	1 cut(s)	203
Sse9I	AATT	1 cut(s)	282
SseBI	AGGCCT	1 cut(s)	182
SsiI	CCGC	2 cut(s)	112, 271
SspMI	CTAG	2 cut(s)	137, 204
StuI	AGGCCT	1 cut(s)	182
StyD4I	CCNGG	2 cut(s)	55, 182
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	12
TaqI	TCGA	5 cut(s)	5, 38, 94, 100, 177
TasI	AATT	1 cut(s)	282
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TseFI	GTSAC	2 cut(s)	65, 139
Tsp45I	GTSAC	2 cut(s)	65, 139
TspDTI	ATGAA	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	105
XspI	CTAG	2 cut(s)	137, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.