Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001380

Physical Location & Seq

Genomic Coordinates Forward (+)

31973911 .. 31975780

Gene Structure 1870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1230300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAAGACCATCCTCTCCTCCGAGACCATGGACATCCCCGACGGTGTCAAGATCAAGGTCCACGCTAAGATGATCGAGGTCGAAGGTCCTCGCGGGAAGCTCATCCGCAACTTCAAGCACTTGAACTTGGACTTTCAGCTCGTCACCGACGAGGAGACCGGAAAGCGGAAGCTGAAGGTCGAGGCCTGGTTCGGCACCCGCAAAACCAGCGCCGCCATCCGCACCGCCCTCTCCCACGTCGGAAATCTCATCACCGGAGTCACCAAGGGGTACCGCTACAAGATGCGTTTCGTGTATGCTCATTTTCCCATCAATGCCTCCATCACTAATGAGGCCAAGGCGATCGAGATCCGTAACTTTTTGGGTGAAAAGAAGGTGAGAAAGGTGGATATGCTTGATGGTGTTTCCATCACCCGATCTGAGAAGGTCAAGGATGAGCTGATCTTGGATGGAAATGATATCGAGCTTGTTTCTCGGTCTTGTGCCCTGATCAACCAGAAATGCCATGTCAAGAACAAGGATATCAGGAAGTTTCTTGATGGTATCTATGTGAGCGAGAGGGGAACCATCCTTACAGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009955 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048856 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

195

Amino Acids

22.02

Weight (kDa)

9.52

Isoelectric Point (pI)

24.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6	PF00347	12 - 90	5.9e-09	Ribosomal protein L6
Ribosomal_L6	PF00347	103 - 181	2.9e-12	Ribosomal protein L6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33120 AT1G33140 AT4G10450 AT4G10450
fragaria_vesca	FvH4_5g10230 FvH4_7g33110
malus_domestica	MD01G1230300.v1.1 MD07G1302000.v1.1 MD16G1260300.v1.1
prunus_persica	Prupe.2G321000_v2.0.a1 Prupe.5G136400_v2.0.a1
pyrus_communis	pycom01g23830 pycom07g09170 pycom07g27520 pycom12g07060
rosa_chinensis	RchiOBHm_Chr1g0334541 RchiOBHm_Chr1g0334651 RchiOBHm_Chr1g0383161 RchiOBHm_Chr2g0169651 RchiOBHm_Chr3g0462551 RchiOBHm_Chr7g0187991
rosa_laevigata	RLG00000004736 RLG00000026125
rosa_multiflora	Rmu_sc0003624.1_g000019 Rmu_sc0005044.1_g000024 Rmu_sc0008563.1_g000005 Rmu_sc0013280.1_g000007 Rmu_sc0023940.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081920 Rroxscaffold_3G00266830 Rroxscaffold_4G00277530
rosa_rugosa	Rorug01G0126100 Rorug01G0439300
rosa_samantha	Rh1AG139700 Rh1AG464900 Rh1BG422200 Rh1CG131600 Rh1CG435500 Rh1DG143700 Rh1DG153800 Rh1DG454900 Rh3AG115500 Rh3BG118900 Rh3CG122300 Rh7AG091500 Rh7BG093000 Rh7CG092300 Rh7DG093700
rosa_wichuraiana	Rw1G009540 Rw1G009550 Rw2G050900 Rw3G009780 Rw7G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	270
AccB1I	GGYRCC	2 cut(s)	194, 270
AccII	CGCG	1 cut(s)	93
AciI	CCGC	8 cut(s)	93, 106, 166, 199, 213, 220, 225, 274
AclWI	GGATC	1 cut(s)	343
AcuI	CTGAAG	1 cut(s)	194
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	165
AgsI	TTSAA	2 cut(s)	115, 124
AjiI	CACGTC	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	185
AluBI	AGCT	5 cut(s)	100, 139, 172, 439, 466
AluI	AGCT	5 cut(s)	100, 139, 172, 439, 466
Alw26I	GTCTC	2 cut(s)	17, 149
AlwI	GGATC	1 cut(s)	343
AoxI	GGCC	2 cut(s)	183, 333
Asp718I	GGTACC	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	2 cut(s)	58, 86
AsuHPI	GGTGA	6 cut(s)	136, 244, 253, 377, 388, 403
AvaII	GGWCC	2 cut(s)	58, 86
BaeGI	GKGCMC	1 cut(s)	487
BanI	GGYRCC	2 cut(s)	194, 270
BbsI	GAAGAC	1 cut(s)	11
BccI	CCATC	9 cut(s)	17, 224, 317, 329, 392, 416, 443, 533, 575
BciT130I	CCWGG	1 cut(s)	187
BclI	TGATCA	1 cut(s)	489
BcoDI	GTCTC	2 cut(s)	17, 149
BfoI	RGCGCY	1 cut(s)	213
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	1 cut(s)	187
Bme18I	GGWCC	2 cut(s)	58, 86
BmgBI	CACGTC	1 cut(s)	238
BmgT120I	GGNCC	2 cut(s)	58, 86
BmiI	GGNNCC	3 cut(s)	196, 272, 565
BmrFI	CCNGG	1 cut(s)	187
BmsI	GCATC	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	11
BsaBI	GATNNNNATC	1 cut(s)	347
BsaI	GGTCTC	2 cut(s)	17, 149
BsaJI	CCNNGG	3 cut(s)	27, 264, 336
BsaWI	WCCGGW	2 cut(s)	158, 254
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse8I	GATNNNNATC	1 cut(s)	347
BseBI	CCWGG	1 cut(s)	187
BseDI	CCNNGG	3 cut(s)	27, 264, 336
BseGI	GGATG	7 cut(s)	9, 33, 102, 216, 439, 454, 567
BseJI	GATNNNNATC	1 cut(s)	347
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	411
BseRI	GAGGAG	2 cut(s)	7, 167
BseSI	GKGCMC	1 cut(s)	487
Bsh1236I	CGCG	1 cut(s)	93
Bsh1285I	CGRYCG	1 cut(s)	345
BshFI	GGCC	2 cut(s)	185, 335
BshNI	GGYRCC	2 cut(s)	194, 270
BsiEI	CGRYCG	1 cut(s)	345
BsiSI	CCGG	2 cut(s)	159, 255
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmAI	GTCTC	2 cut(s)	17, 149
BsnI	GGCC	2 cut(s)	185, 335
Bso31I	GGTCTC	2 cut(s)	17, 149
Bsp1286I	GDGCHC	1 cut(s)	487
Bsp143I	GATC	7 cut(s)	51, 72, 342, 348, 416, 441, 489
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	8 cut(s)	93, 106, 166, 199, 213, 220, 225, 274
BspANI	GGCC	2 cut(s)	185, 335
BspCNI	CTCAG	1 cut(s)	412
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	3 cut(s)	196, 272, 565
BspPI	GGATC	1 cut(s)	343
BspT107I	GGYRCC	2 cut(s)	194, 270
BspTNI	GGTCTC	2 cut(s)	17, 149
BssECI	CCNNGG	3 cut(s)	27, 264, 336
BssMI	GATC	7 cut(s)	51, 72, 342, 348, 416, 441, 489
BssT1I	CCWWGG	3 cut(s)	27, 264, 336
Bst2UI	CCWGG	1 cut(s)	187
Bst4CI	ACNGT	1 cut(s)	44
BstDEI	CTNAG	2 cut(s)	66, 420
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	7 cut(s)	9, 33, 102, 216, 439, 454, 567
BstFNI	CGCG	1 cut(s)	93
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	7 cut(s)	54, 75, 345, 351, 419, 444, 492
BstMAI	GTCTC	2 cut(s)	17, 149
BstMBI	GATC	7 cut(s)	51, 72, 342, 348, 416, 441, 489
BstMCI	CGRYCG	1 cut(s)	345
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstNI	CCWGG	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	185
BstSLI	GKGCMC	1 cut(s)	487
BstUI	CGCG	1 cut(s)	93
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	348
BstYI	RGATCY	1 cut(s)	348
BsuRI	GGCC	2 cut(s)	185, 335
BtgI	CCRYGG	1 cut(s)	27
BtrI	CACGTC	1 cut(s)	238
BtsCI	GGATG	7 cut(s)	9, 33, 102, 216, 439, 454, 567
CfoI	GCGC	1 cut(s)	212
Cfr13I	GGNCC	2 cut(s)	58, 86
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	2 cut(s)	28, 506
CviJI	RGCY	7 cut(s)	100, 139, 172, 185, 335, 439, 466
CviKI_1	RGCY	7 cut(s)	100, 139, 172, 185, 335, 439, 466
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	2 cut(s)	66, 420
DpnI	GATC	7 cut(s)	53, 74, 344, 350, 418, 443, 491
DpnII	GATC	7 cut(s)	51, 72, 342, 348, 416, 441, 489
Eco130I	CCWWGG	3 cut(s)	27, 264, 336
Eco147I	AGGCCT	1 cut(s)	185
Eco31I	GGTCTC	2 cut(s)	17, 149
Eco32I	GATATC	2 cut(s)	460, 523
Eco47I	GGWCC	2 cut(s)	58, 86
Eco57I	CTGAAG	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	185
EcoRV	GATATC	2 cut(s)	460, 523
EcoT14I	CCWWGG	3 cut(s)	27, 264, 336
ErhI	CCWWGG	3 cut(s)	27, 264, 336
FaeI	CATG	2 cut(s)	31, 509
FaiI	YATR	5 cut(s)	29, 297, 392, 507, 549
FatI	CATG	2 cut(s)	27, 505
FauI	CCCGC	2 cut(s)	86, 206
FbaI	TGATCA	1 cut(s)	489
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	6 cut(s)	20, 89, 203, 446, 461, 554
Fsp4HI	GCNGC	1 cut(s)	213
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	1 cut(s)	213
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	185, 335
HapII	CCGG	2 cut(s)	159, 255
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	2 cut(s)	31, 509
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HinfI	GANTC	1 cut(s)	258
HpaII	CCGG	2 cut(s)	159, 255
HphI	GGTGA	6 cut(s)	136, 244, 253, 377, 388, 403
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	3 cut(s)	22, 242, 421
Hpy188III	TCNNGA	5 cut(s)	49, 346, 511, 526, 536
Hpy8I	GTNNAC	1 cut(s)	61
Hpy99I	CGWCG	3 cut(s)	44, 152, 242
HpyAV	CCTTC	4 cut(s)	77, 169, 367, 418
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4IV	ACGT	1 cut(s)	237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
HpyF3I	CTNAG	2 cut(s)	66, 420
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	2 cut(s)	31, 509
HspAI	GCGC	1 cut(s)	210
KpnI	GGTACC	1 cut(s)	274
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	7 cut(s)	51, 72, 342, 348, 416, 441, 489
LpnPI	CCDG	8 cut(s)	172, 172, 199, 220, 268, 500, 509, 511
LweI	GCATC	1 cut(s)	273
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	3 cut(s)	142, 259, 353
MalI	GATC	7 cut(s)	53, 74, 344, 350, 418, 443, 491
MboI	GATC	7 cut(s)	51, 72, 342, 348, 416, 441, 489
MboII	GAAGA	1 cut(s)	16
MflI	RGATCY	1 cut(s)	348
MhlI	GDGCHC	1 cut(s)	487
MlyI	GAGTC	1 cut(s)	267
MmeI	TCCRAC	1 cut(s)	220
MspI	CCGG	2 cut(s)	159, 255
MspR9I	CCNGG	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	187
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	207
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	7 cut(s)	51, 72, 342, 348, 416, 441, 489
NlaIII	CATG	2 cut(s)	31, 509
NlaIV	GGNNCC	3 cut(s)	196, 272, 565
NmuCI	GTSAC	2 cut(s)	142, 259
PceI	AGGCCT	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PflFI	GACNNNGTC	1 cut(s)	44
PkrI	GCNGC	1 cut(s)	214
Ple19I	CGATCG	1 cut(s)	345
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
PpuMI	RGGWCCY	1 cut(s)	86
Psp5II	RGGWCCY	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	185
PspN4I	GGNNCC	3 cut(s)	196, 272, 565
PspPI	GGNCC	2 cut(s)	58, 86
PspPPI	RGGWCCY	1 cut(s)	86
PsrI	GAACNNNNNNTAC	1 cut(s)	556
PsuI	RGATCY	1 cut(s)	348
PsyI	GACNNNGTC	1 cut(s)	44
PvuI	CGATCG	1 cut(s)	345
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	7 cut(s)	51, 72, 342, 348, 416, 441, 489
Sau96I	GGNCC	2 cut(s)	58, 86
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	1 cut(s)	187
SduI	GDGCHC	1 cut(s)	487
SfaNI	GCATC	1 cut(s)	273
SinI	GGWCC	2 cut(s)	58, 86
SseBI	AGGCCT	1 cut(s)	185
SsiI	CCGC	8 cut(s)	93, 106, 166, 199, 213, 220, 225, 274
StuI	AGGCCT	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	185
StyI	CCWWGG	3 cut(s)	27, 264, 336
TaaI	ACNGT	1 cut(s)	44
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	5 cut(s)	75, 81, 180, 345, 462
TaqII	GACCGA	1 cut(s)	465
TauI	GCSGC	1 cut(s)	215
TseFI	GTSAC	2 cut(s)	142, 259
Tsp45I	GTSAC	2 cut(s)	142, 259
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	341
Tth111I	GACNNNGTC	1 cut(s)	44
VpaK11BI	GGWCC	2 cut(s)	58, 86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.