Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001380

Physical Location & Seq

Genomic Coordinates Forward (+)

20988709 .. 20991555

Gene Structure 2847 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G009550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAAGACCATTCTTTCGTCGGAGACCATGGACATTCCCGACGGGGTGAGGATCAAGGTCCACGCGAAGATCATCGAGGTGGAAGGCCCGCGCGGCAAGCTCGTTCGCAACTTCAAGCACCTCAACCTTGATTTCCAGCTCATCAAGGACGAGGAGACCAGCCAGCGCAAGCTCAAGATCGAGGCCTGGTTCGGCACTCGCAAGACCAGCGCCGCCATCAGGACCGCCCTCTCGCACGGGTACCAGTACAAGATGAGGTTCGTGTACGCTCATTTTCCCATCAACGCTTCGATCACTAATGGAGCCAAGTCGATTGAGATCAGGAACTTTCTCGGTGAGAAGAAGCAATACTACTATACACAGGGATATAACAGAAGAGTAAAGGATCAAGTGATCCTACACTGCGGAAGTAGTGACAACTATGCCTCAAATAACACAAACCCAGAAAATTCAAGAACCCTAATTCAATCCGGCCTCTACACTTCAAATCGTGATACAAGGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009955 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048856 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

168

Amino Acids

19.36

Weight (kDa)

9.81

Isoelectric Point (pI)

25.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33120 AT1G33140 AT4G10450 AT4G10450
fragaria_vesca	FvH4_5g10230 FvH4_7g33110
malus_domestica	MD01G1230300.v1.1 MD07G1302000.v1.1 MD16G1260300.v1.1
prunus_persica	Prupe.2G321000_v2.0.a1 Prupe.5G136400_v2.0.a1
pyrus_communis	pycom01g23830 pycom07g09170 pycom07g27520 pycom12g07060
rosa_chinensis	RchiOBHm_Chr1g0334541 RchiOBHm_Chr1g0334651 RchiOBHm_Chr1g0383161 RchiOBHm_Chr2g0169651 RchiOBHm_Chr3g0462551 RchiOBHm_Chr7g0187991
rosa_laevigata	RLG00000004736 RLG00000026125
rosa_multiflora	Rmu_sc0003624.1_g000019 Rmu_sc0005044.1_g000024 Rmu_sc0008563.1_g000005 Rmu_sc0013280.1_g000007 Rmu_sc0023940.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081920 Rroxscaffold_3G00266830 Rroxscaffold_4G00277530
rosa_rugosa	Rorug01G0126100 Rorug01G0439300
rosa_samantha	Rh1AG139700 Rh1AG464900 Rh1BG422200 Rh1CG131600 Rh1CG435500 Rh1DG143700 Rh1DG153800 Rh1DG454900 Rh3AG115500 Rh3BG118900 Rh3CG122300 Rh7AG091500 Rh7BG093000 Rh7CG092300 Rh7DG093700
rosa_wichuraiana	Rw1G009540 Rw1G009550 Rw2G050900 Rw3G009780 Rw7G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	240
AccB1I	GGYRCC	1 cut(s)	240
AccII	CGCG	3 cut(s)	65, 91, 93
AciI	CCGC	5 cut(s)	89, 93, 213, 225, 405
AclWI	GGATC	3 cut(s)	59, 388, 393
AcsI	RAATTY	1 cut(s)	448
AfaI	GTAC	3 cut(s)	242, 248, 266
AfiI	CCNNNNNNNGG	1 cut(s)	219
AgsI	TTSAA	4 cut(s)	115, 453, 467, 486
AjnI	CCWGG	1 cut(s)	185
AluBI	AGCT	3 cut(s)	100, 139, 172
AluI	AGCT	3 cut(s)	100, 139, 172
Alw26I	GTCTC	2 cut(s)	17, 149
AlwI	GGATC	3 cut(s)	59, 388, 393
AoxI	GGCC	4 cut(s)	85, 183, 472, 500
ApoI	RAATTY	1 cut(s)	448
ArsI	GACNNNNNNTTYG	1 cut(s)	30
Asp718I	GGTACC	1 cut(s)	240
AspLEI	GCGC	3 cut(s)	93, 168, 212
AspS9I	GGNCC	3 cut(s)	58, 86, 222
AsuHPI	GGTGA	2 cut(s)	58, 347
AvaII	GGWCC	2 cut(s)	58, 222
BanI	GGYRCC	1 cut(s)	240
BarI	GAAGNNNNNNTAC	4 cut(s)	332, 335, 364, 367
BbsI	GAAGAC	1 cut(s)	11
BccI	CCATC	2 cut(s)	224, 287
BciT130I	CCWGG	1 cut(s)	187
BcoDI	GTCTC	2 cut(s)	17, 149
BfoI	RGCGCY	1 cut(s)	213
BglI	GCCNNNNNGGC	1 cut(s)	93
BisI	GCNGC	2 cut(s)	94, 213
BlsI	GCNGC	2 cut(s)	95, 214
Bme1390I	CCNGG	1 cut(s)	187
Bme18I	GGWCC	2 cut(s)	58, 222
BmgT120I	GGNCC	3 cut(s)	58, 86, 222
BmiI	GGNNCC	2 cut(s)	242, 304
BmrFI	CCNGG	1 cut(s)	187
BpiI	GAAGAC	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	158
BsaBI	GATNNNNATC	1 cut(s)	317
BsaI	GGTCTC	2 cut(s)	17, 149
BsaJI	CCNNGG	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse1I	ACTGG	1 cut(s)	244
Bse8I	GATNNNNATC	1 cut(s)	317
BseBI	CCWGG	1 cut(s)	187
BseDI	CCNNGG	1 cut(s)	27
BseJI	GATNNNNATC	1 cut(s)	317
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	1 cut(s)	167
Bsh1236I	CGCG	3 cut(s)	65, 91, 93
BshFI	GGCC	4 cut(s)	87, 185, 474, 502
BshNI	GGYRCC	1 cut(s)	240
BsiSI	CCGG	1 cut(s)	471
BslI	CCNNNNNNNGG	1 cut(s)	219
BsmAI	GTCTC	2 cut(s)	17, 149
BsnI	GGCC	4 cut(s)	87, 185, 474, 502
Bso31I	GGTCTC	2 cut(s)	17, 149
Bsp143I	GATC	7 cut(s)	51, 69, 177, 291, 318, 385, 393
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	5 cut(s)	89, 93, 213, 225, 405
BspANI	GGCC	4 cut(s)	87, 185, 474, 502
BspFNI	CGCG	3 cut(s)	65, 91, 93
BspLI	GGNNCC	2 cut(s)	242, 304
BspPI	GGATC	3 cut(s)	59, 388, 393
BspT107I	GGYRCC	1 cut(s)	240
BspTNI	GGTCTC	2 cut(s)	17, 149
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	7 cut(s)	51, 69, 177, 291, 318, 385, 393
BssT1I	CCWWGG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	187
Bst6I	CTCTTC	1 cut(s)	370
BstC8I	GCNNGC	4 cut(s)	89, 98, 164, 170
BstDSI	CCRYGG	1 cut(s)	27
BstFNI	CGCG	3 cut(s)	65, 91, 93
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	3 cut(s)	93, 168, 212
BstKTI	GATC	7 cut(s)	54, 72, 180, 294, 321, 388, 396
BstMAI	GTCTC	2 cut(s)	17, 149
BstMBI	GATC	7 cut(s)	51, 69, 177, 291, 318, 385, 393
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 97, 207
BstNI	CCWGG	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	185
BstUI	CGCG	3 cut(s)	65, 91, 93
BstV2I	GAAGAC	1 cut(s)	11
BsuRI	GGCC	4 cut(s)	87, 185, 474, 502
BtgI	CCRYGG	1 cut(s)	27
BtsI	GCAGTG	1 cut(s)	400
BtsIMutI	CAGTG	1 cut(s)	400
Cac8I	GCNNGC	4 cut(s)	89, 98, 164, 170
CfoI	GCGC	3 cut(s)	93, 168, 212
Cfr13I	GGNCC	3 cut(s)	58, 86, 222
Csp6I	GTAC	3 cut(s)	241, 247, 265
CviAII	CATG	1 cut(s)	28
CviJI	RGCY	9 cut(s)	87, 100, 139, 162, 172, 185, 305, 474, 502
CviKI_1	RGCY	9 cut(s)	87, 100, 139, 162, 172, 185, 305, 474, 502
CviQI	GTAC	3 cut(s)	241, 247, 265
DpnI	GATC	7 cut(s)	53, 71, 179, 293, 320, 387, 395
DpnII	GATC	7 cut(s)	51, 69, 177, 291, 318, 385, 393
Eam1104I	CTCTTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	370
Eco130I	CCWWGG	1 cut(s)	27
Eco147I	AGGCCT	1 cut(s)	185
Eco31I	GGTCTC	2 cut(s)	17, 149
Eco47I	GGWCC	2 cut(s)	58, 222
EcoRII	CCWGG	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	1 cut(s)	31
FaiI	YATR	5 cut(s)	29, 357, 369, 423, 505
FatI	CATG	1 cut(s)	27
FauI	CCCGC	1 cut(s)	96
Fnu4HI	GCNGC	2 cut(s)	94, 213
Fsp4HI	GCNGC	2 cut(s)	94, 213
GlaI	GCGC	3 cut(s)	92, 167, 211
GluI	GCNGC	2 cut(s)	94, 213
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	4 cut(s)	87, 185, 474, 502
HapII	CCGG	1 cut(s)	471
HhaI	GCGC	3 cut(s)	93, 168, 212
Hin1II	CATG	1 cut(s)	31
Hin6I	GCGC	3 cut(s)	91, 166, 210
HinP1I	GCGC	3 cut(s)	91, 166, 210
HpaII	CCGG	1 cut(s)	471
HphI	GGTGA	2 cut(s)	58, 347
Hpy166II	GTNNAC	2 cut(s)	61, 265
Hpy188I	TCNGA	1 cut(s)	22
Hpy188III	TCNNGA	6 cut(s)	38, 175, 220, 322, 453, 491
Hpy8I	GTNNAC	2 cut(s)	61, 265
Hpy99I	CGWCG	2 cut(s)	22, 44
HpyAV	CCTTC	1 cut(s)	77
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 97, 207
Hsp92II	CATG	1 cut(s)	31
HspAI	GCGC	3 cut(s)	91, 166, 210
KpnI	GGTACC	1 cut(s)	244
Kzo9I	GATC	7 cut(s)	51, 69, 177, 291, 318, 385, 393
LmnI	GCTCC	1 cut(s)	302
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	7 cut(s)	53, 71, 179, 293, 320, 387, 395
MboI	GATC	7 cut(s)	51, 69, 177, 291, 318, 385, 393
MboII	GAAGA	4 cut(s)	16, 79, 352, 387
MluCI	AATT	2 cut(s)	448, 462
MnlI	CCTC	9 cut(s)	42, 70, 131, 145, 175, 239, 249, 436, 485
MslI	CAYNNNNRTG	1 cut(s)	77
MspI	CCGG	1 cut(s)	471
MspR9I	CCNGG	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	187
MvnI	CGCG	3 cut(s)	65, 91, 93
MwoI	GCNNNNNNNGC	3 cut(s)	93, 97, 207
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	7 cut(s)	51, 69, 177, 291, 318, 385, 393
NlaIII	CATG	1 cut(s)	31
NlaIV	GGNNCC	2 cut(s)	242, 304
NmuCI	GTSAC	1 cut(s)	413
PceI	AGGCCT	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	95, 214
Psp6I	CCWGG	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	185
PspN4I	GGNNCC	2 cut(s)	242, 304
PspPI	GGNCC	3 cut(s)	58, 86, 222
RsaI	GTAC	3 cut(s)	242, 248, 266
RsaNI	GTAC	3 cut(s)	241, 247, 265
RseI	CAYNNNNRTG	1 cut(s)	77
SatI	GCNGC	2 cut(s)	94, 213
Sau3AI	GATC	7 cut(s)	51, 69, 177, 291, 318, 385, 393
Sau96I	GGNCC	3 cut(s)	58, 86, 222
ScrFI	CCNGG	1 cut(s)	187
SetI	ASST	8 cut(s)	60, 81, 102, 123, 129, 141, 174, 260
SinI	GGWCC	2 cut(s)	58, 222
SmiMI	CAYNNNNRTG	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	2 cut(s)	448, 462
SseBI	AGGCCT	1 cut(s)	185
SsiI	CCGC	5 cut(s)	89, 93, 213, 225, 405
StuI	AGGCCT	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	185
StyI	CCWWGG	1 cut(s)	27
TaqI	TCGA	4 cut(s)	75, 180, 290, 311
TasI	AATT	2 cut(s)	448, 462
TatI	WGTACW	1 cut(s)	246
TauI	GCSGC	2 cut(s)	96, 215
TscAI	CASTG	1 cut(s)	407
TseFI	GTSAC	1 cut(s)	413
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	407
VpaK11BI	GGWCC	2 cut(s)	58, 222
XapI	RAATTY	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.