RLG00000004736

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001380
Physical Location & Seq
Reverse (-)
61818111 .. 61818416
306 bp
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UTR
Exon/CDS
Intron
RLM00000004736

Sequence Viewer

Length: 306 bp
ATGAGGTTCGTCTACGCTCACTTTCCGATCAACGCCTCCATCCCCAGTTCCAGCAACGCCATCGAGATCCGCAACTTTCTGGGAGAGAAGAAAGTCAGGAAGGTCCAGATGCTCGAAGGCGTGACGATCTCGCGATCGGAGAAGGTGAAGGATGAGCTGGTTTTGGACGGAAACGACATCGAGTTGGTTTCGAGGTCGGCGGCGCTGATCAACCAGAAGTGTCATGTGAAGAACAAGGACATCAGGAAGTTTCTGGATGGGATCTACGTCAGCGAGAGGAGCACCATTACCACCGGAGACGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6

Protein Analysis

102

Amino Acids

11.41

Weight (kDa)

8.79

Isoelectric Point (pI)

44.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L6 PF00347 20 - 87 8.7e-14 Ribosomal protein L6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 12
AccII CGCG 1 cut(s) 133
AciI CCGC 2 cut(s) 70, 200
AclWI GGATC 2 cut(s) 61, 269
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
Alw21I GWGCWC 1 cut(s) 284
Alw26I GTCTC 1 cut(s) 291
AlwI GGATC 2 cut(s) 61, 269
AspLEI GCGC 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 103
AsuHPI GGTGA 1 cut(s) 157
AvaII GGWCC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 284
BccI CCATC 3 cut(s) 47, 68, 251
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BclI TGATCA 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 291
BfoI RGCGCY 1 cut(s) 206
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 103
BmrI ACTGGG 1 cut(s) 39
BmsI GCATC 1 cut(s) 99
BmuI ACTGGG 1 cut(s) 39
BsaWI WCCGGW 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 45
BseGI GGATG 3 cut(s) 39, 157, 262
BseNI ACTGG 1 cut(s) 45
BseRI GAGGAG 1 cut(s) 292
Bsh1236I CGCG 1 cut(s) 133
Bsh1285I CGRYCG 1 cut(s) 137
BsiEI CGRYCG 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 284
BsiSI CCGG 1 cut(s) 294
BsmAI GTCTC 1 cut(s) 291
BsmBI CGTCTC 1 cut(s) 291
Bsp1286I GDGCHC 1 cut(s) 284
Bsp143I GATC 6 cut(s) 27, 66, 126, 134, 207, 261
Bsp68I TCGCGA 1 cut(s) 133
BspACI CCGC 2 cut(s) 70, 200
BspFNI CGCG 1 cut(s) 133
BspPI GGATC 2 cut(s) 61, 269
BsrI ACTGG 1 cut(s) 45
BssMI GATC 6 cut(s) 27, 66, 126, 134, 207, 261
BstF5I GGATG 3 cut(s) 39, 157, 262
BstFNI CGCG 1 cut(s) 133
BstH2I RGCGCY 1 cut(s) 206
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 6 cut(s) 30, 69, 129, 137, 210, 264
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 6 cut(s) 27, 66, 126, 134, 207, 261
BstMCI CGRYCG 1 cut(s) 137
BstMWI GCNNNNNNNGC 1 cut(s) 279
BstUI CGCG 1 cut(s) 133
BstX2I RGATCY 2 cut(s) 66, 261
BstYI RGATCY 2 cut(s) 66, 261
BtsCI GGATG 3 cut(s) 39, 157, 262
BtuMI TCGCGA 1 cut(s) 133
CfoI GCGC 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 103
CviAII CATG 1 cut(s) 224
CviJI RGCY 1 cut(s) 157
CviKI_1 RGCY 1 cut(s) 157
DpnI GATC 6 cut(s) 29, 68, 128, 136, 209, 263
DpnII GATC 6 cut(s) 27, 66, 126, 134, 207, 261
Eco47I GGWCC 1 cut(s) 103
Esp3I CGTCTC 1 cut(s) 291
FaeI CATG 1 cut(s) 227
FaiI YATR 1 cut(s) 225
FatI CATG 1 cut(s) 223
FbaI TGATCA 1 cut(s) 207
FblI GTMKAC 1 cut(s) 12
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 3 cut(s) 26, 164, 269
Fsp4HI GCNGC 1 cut(s) 201
GlaI GCGC 1 cut(s) 204
GluI GCNGC 1 cut(s) 201
HaeII RGCGCY 1 cut(s) 206
HapII CCGG 1 cut(s) 294
HhaI GCGC 1 cut(s) 205
Hin1II CATG 1 cut(s) 227
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HpaII CCGG 1 cut(s) 294
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 2 cut(s) 27, 139
Hpy188III TCNNGA 6 cut(s) 64, 97, 106, 132, 244, 254
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 4 cut(s) 94, 110, 136, 142
HpyCH4IV ACGT 1 cut(s) 267
HpyF10VI GCNNNNNNNGC 1 cut(s) 279
HpySE526I ACGT 1 cut(s) 267
Hsp92II CATG 1 cut(s) 227
HspAI GCGC 1 cut(s) 203
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 6 cut(s) 27, 66, 126, 134, 207, 261
LmnI GCTCC 1 cut(s) 279
LpnPI CCDG 9 cut(s) 58, 64, 65, 82, 119, 143, 227, 229, 239
LweI GCATC 1 cut(s) 99
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 121
MalI GATC 6 cut(s) 29, 68, 128, 136, 209, 263
MboI GATC 6 cut(s) 27, 66, 126, 134, 207, 261
MboII GAAGA 2 cut(s) 100, 241
MflI RGATCY 2 cut(s) 66, 261
MhlI GDGCHC 1 cut(s) 284
MnlI CCTC 3 cut(s) 46, 186, 270
MspI CCGG 1 cut(s) 294
MvnI CGCG 1 cut(s) 133
MwoI GCNNNNNNNGC 1 cut(s) 279
NdeII GATC 6 cut(s) 27, 66, 126, 134, 207, 261
NlaIII CATG 1 cut(s) 227
NmuCI GTSAC 1 cut(s) 121
NruI TCGCGA 1 cut(s) 133
PkrI GCNGC 1 cut(s) 202
Ple19I CGATCG 1 cut(s) 137
PspPI GGNCC 1 cut(s) 103
PsuI RGATCY 2 cut(s) 66, 261
PvuI CGATCG 1 cut(s) 137
RruI TCGCGA 1 cut(s) 133
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 6 cut(s) 27, 66, 126, 134, 207, 261
Sau96I GGNCC 1 cut(s) 103
SduI GDGCHC 1 cut(s) 284
SetI ASST 6 cut(s) 8, 105, 147, 159, 197, 270
SfaNI GCATC 1 cut(s) 99
SinI GGWCC 1 cut(s) 103
SsiI CCGC 2 cut(s) 70, 200
TaiI ACGT 1 cut(s) 270
TaqI TCGA 4 cut(s) 63, 114, 180, 191
TauI GCSGC 1 cut(s) 203
TseFI GTSAC 1 cut(s) 121
Tsp45I GTSAC 1 cut(s) 121
TspGWI ACGGA 1 cut(s) 183
VpaK11BI GGWCC 1 cut(s) 103
XmiI GTMKAC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.