Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001380

Physical Location & Seq

Genomic Coordinates Forward (+)

30270836 .. 30273027

Gene Structure 2192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG143700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGAAGACCATTCTTTCGTCGGAGACCATGGACATTCCCGACGGGGTGAAGATCAAGGTCCACGCGAAGATCATCGAGGTGGAAGGCCCGCGCGGCAAGCTCGTCCGCAACTTCAAGCACCTCAACCTTGATTTCCAGCTCATCAAGGACGAGGAGACCGGCCAGCGCAAGCTCAAGATCGAGGCCTGGTTCGGCACTCGCAAGACCAGCGCCGCCATCAGGACCGCCCTCTCGCACGTCGAGAATCTCATCACCGGAGTCACCAAGGGGTACCGGTACAAGATGAGGTTCGTGTACGCTCATTTTCCCATCAACGCTTCGATCACTAATGGAGCCAAGTCGATTGAGATCAGGAACTTTCTCGGTGAGAAGAAGGTGAGAAAGGTGGATATGCTTGATGGTGTTTCTATCCTCCGATCTGAGAAGGTGAAGGATGAGCTGATATTGGATGGCAATGATATTGAACTTGTTTCTCGGTCTTGTGCTCTGATCAACCAGGTATATATTTCTCTTTTTTGTTCTATATCTCGTTTCTGTTTTCTGTACAAGTTCTGTAATGTGTTTATTCTTTCTTGCGTGTATATGCTGCTTGCCTTTGCTGAGTCTTGTGTTCTCATGTTTGTTTTGACAGAAATGCCATGTCAAGAACAAGGATATCAGGAAGTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009955 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048856 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

223

Amino Acids

25.45

Weight (kDa)

8.9

Isoelectric Point (pI)

30.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6	PF00347	12 - 90	2.4e-09	Ribosomal protein L6
Ribosomal_L6	PF00347	112 - 167	9.2e-07	Ribosomal protein L6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33120 AT1G33140 AT4G10450 AT4G10450
fragaria_vesca	FvH4_5g10230 FvH4_7g33110
malus_domestica	MD01G1230300.v1.1 MD07G1302000.v1.1 MD16G1260300.v1.1
prunus_persica	Prupe.2G321000_v2.0.a1 Prupe.5G136400_v2.0.a1
pyrus_communis	pycom01g23830 pycom07g09170 pycom07g27520 pycom12g07060
rosa_chinensis	RchiOBHm_Chr1g0334541 RchiOBHm_Chr1g0334651 RchiOBHm_Chr1g0383161 RchiOBHm_Chr2g0169651 RchiOBHm_Chr3g0462551 RchiOBHm_Chr7g0187991
rosa_laevigata	RLG00000004736 RLG00000026125
rosa_multiflora	Rmu_sc0003624.1_g000019 Rmu_sc0005044.1_g000024 Rmu_sc0008563.1_g000005 Rmu_sc0013280.1_g000007 Rmu_sc0023940.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081920 Rroxscaffold_3G00266830 Rroxscaffold_4G00277530
rosa_rugosa	Rorug01G0126100 Rorug01G0439300
rosa_samantha	Rh1AG139700 Rh1AG464900 Rh1BG422200 Rh1CG131600 Rh1CG435500 Rh1DG143700 Rh1DG153800 Rh1DG454900 Rh3AG115500 Rh3BG118900 Rh3CG122300 Rh7AG091500 Rh7BG093000 Rh7CG092300 Rh7DG093700
rosa_wichuraiana	Rw1G009540 Rw1G009550 Rw2G050900 Rw3G009780 Rw7G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	270
AccB1I	GGYRCC	1 cut(s)	270
AccII	CGCG	3 cut(s)	65, 91, 93
AciI	CCGC	5 cut(s)	89, 93, 106, 213, 225
AcoI	YGGCCR	1 cut(s)	160
AfaI	GTAC	4 cut(s)	272, 278, 296, 545
AfiI	CCNNNNNNNGG	1 cut(s)	219
AgeI	ACCGGT	1 cut(s)	273
AgsI	TTSAA	2 cut(s)	115, 464
AjiI	CACGTC	1 cut(s)	238
AjnI	CCWGG	2 cut(s)	185, 495
AluBI	AGCT	4 cut(s)	100, 139, 172, 439
AluI	AGCT	4 cut(s)	100, 139, 172, 439
Alw21I	GWGCWC	1 cut(s)	487
Alw26I	GTCTC	2 cut(s)	17, 149
AoxI	GGCC	3 cut(s)	85, 160, 183
ApeKI	GCWGC	1 cut(s)	586
ArsI	GACNNNNNNTTYG	1 cut(s)	30
AsiGI	ACCGGT	1 cut(s)	273
Asp718I	GGTACC	1 cut(s)	270
AspLEI	GCGC	3 cut(s)	93, 168, 212
AspS9I	GGNCC	3 cut(s)	58, 86, 222
AsuHPI	GGTGA	6 cut(s)	58, 244, 253, 377, 388, 439
AvaII	GGWCC	2 cut(s)	58, 222
BanI	GGYRCC	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	487
BbvI	GCAGC	1 cut(s)	573
BccI	CCATC	4 cut(s)	224, 317, 392, 443
BciT130I	CCWGG	2 cut(s)	187, 497
BclI	TGATCA	1 cut(s)	489
BcoDI	GTCTC	2 cut(s)	17, 149
BfoI	RGCGCY	1 cut(s)	213
BglI	GCCNNNNNGGC	1 cut(s)	93
BisI	GCNGC	3 cut(s)	94, 213, 587
BlsI	GCNGC	3 cut(s)	95, 214, 588
Bme1390I	CCNGG	2 cut(s)	187, 497
Bme18I	GGWCC	2 cut(s)	58, 222
BmgBI	CACGTC	1 cut(s)	238
BmgT120I	GGNCC	3 cut(s)	58, 86, 222
BmiI	GGNNCC	2 cut(s)	272, 334
BmrFI	CCNGG	2 cut(s)	187, 497
BpiI	GAAGAC	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	158
BsaBI	GATNNNNATC	1 cut(s)	347
BsaI	GGTCTC	2 cut(s)	17, 149
BsaJI	CCNNGG	2 cut(s)	27, 264
BsaWI	WCCGGW	2 cut(s)	254, 273
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse118I	RCCGGY	2 cut(s)	158, 273
Bse3DI	GCAATG	1 cut(s)	460
Bse8I	GATNNNNATC	1 cut(s)	347
BseBI	CCWGG	2 cut(s)	187, 497
BseDI	CCNNGG	2 cut(s)	27, 264
BseGI	GGATG	2 cut(s)	439, 454
BseJI	GATNNNNATC	1 cut(s)	347
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	2 cut(s)	411, 591
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	573
Bsh1236I	CGCG	3 cut(s)	65, 91, 93
BshFI	GGCC	3 cut(s)	87, 162, 185
BshNI	GGYRCC	1 cut(s)	270
BshTI	ACCGGT	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	487
BsiSI	CCGG	3 cut(s)	159, 255, 274
BslI	CCNNNNNNNGG	1 cut(s)	219
BsmAI	GTCTC	2 cut(s)	17, 149
BsnI	GGCC	3 cut(s)	87, 162, 185
Bso31I	GGTCTC	2 cut(s)	17, 149
Bsp1286I	GDGCHC	1 cut(s)	487
Bsp1407I	TGTACA	1 cut(s)	543
Bsp143I	GATC	7 cut(s)	51, 69, 177, 321, 348, 416, 489
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	5 cut(s)	89, 93, 106, 213, 225
BspANI	GGCC	3 cut(s)	87, 162, 185
BspCNI	CTCAG	2 cut(s)	412, 592
BspFNI	CGCG	3 cut(s)	65, 91, 93
BspLI	GGNNCC	2 cut(s)	272, 334
BspT107I	GGYRCC	1 cut(s)	270
BspTNI	GGTCTC	2 cut(s)	17, 149
BsrDI	GCAATG	1 cut(s)	460
BsrFI	RCCGGY	2 cut(s)	158, 273
BsrGI	TGTACA	1 cut(s)	543
BssAI	RCCGGY	2 cut(s)	158, 273
BssECI	CCNNGG	2 cut(s)	27, 264
BssMI	GATC	7 cut(s)	51, 69, 177, 321, 348, 416, 489
BssT1I	CCWWGG	2 cut(s)	27, 264
Bst2UI	CCWGG	2 cut(s)	187, 497
BstAUI	TGTACA	1 cut(s)	543
BstC8I	GCNNGC	5 cut(s)	89, 98, 164, 170, 591
BstDEI	CTNAG	2 cut(s)	420, 600
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	439, 454
BstFNI	CGCG	3 cut(s)	65, 91, 93
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	3 cut(s)	93, 168, 212
BstKTI	GATC	7 cut(s)	54, 72, 180, 324, 351, 419, 492
BstMAI	GTCTC	2 cut(s)	17, 149
BstMBI	GATC	7 cut(s)	51, 69, 177, 321, 348, 416, 489
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 97, 207
BstNI	CCWGG	2 cut(s)	187, 497
BstSCI	CCNGG	2 cut(s)	185, 495
BstUI	CGCG	3 cut(s)	65, 91, 93
BstV1I	GCAGC	1 cut(s)	573
BstV2I	GAAGAC	1 cut(s)	11
BsuRI	GGCC	3 cut(s)	87, 162, 185
BtgI	CCRYGG	1 cut(s)	27
BtrI	CACGTC	1 cut(s)	238
BtsCI	GGATG	2 cut(s)	439, 454
Cac8I	GCNNGC	5 cut(s)	89, 98, 164, 170, 591
CfoI	GCGC	3 cut(s)	93, 168, 212
Cfr10I	RCCGGY	2 cut(s)	158, 273
Cfr13I	GGNCC	3 cut(s)	58, 86, 222
CsiI	ACCWGGT	1 cut(s)	495
Csp6I	GTAC	4 cut(s)	271, 277, 295, 544
CspAI	ACCGGT	1 cut(s)	273
CviAII	CATG	3 cut(s)	28, 616, 639
CviJI	RGCY	8 cut(s)	87, 100, 139, 162, 172, 185, 335, 439
CviKI_1	RGCY	8 cut(s)	87, 100, 139, 162, 172, 185, 335, 439
CviQI	GTAC	4 cut(s)	271, 277, 295, 544
DdeI	CTNAG	2 cut(s)	420, 600
DpnI	GATC	7 cut(s)	53, 71, 179, 323, 350, 418, 491
DpnII	GATC	7 cut(s)	51, 69, 177, 321, 348, 416, 489
EaeI	YGGCCR	1 cut(s)	160
Eco130I	CCWWGG	2 cut(s)	27, 264
Eco147I	AGGCCT	1 cut(s)	185
Eco31I	GGTCTC	2 cut(s)	17, 149
Eco32I	GATATC	1 cut(s)	656
Eco47I	GGWCC	2 cut(s)	58, 222
EcoRII	CCWGG	2 cut(s)	185, 495
EcoRV	GATATC	1 cut(s)	656
EcoT14I	CCWWGG	2 cut(s)	27, 264
ErhI	CCWWGG	2 cut(s)	27, 264
FaeI	CATG	3 cut(s)	31, 619, 642
FaiI	YATR	9 cut(s)	29, 392, 502, 504, 524, 582, 584, 617, 640
FatI	CATG	3 cut(s)	27, 615, 638
FauI	CCCGC	1 cut(s)	96
FbaI	TGATCA	1 cut(s)	489
Fnu4HI	GCNGC	3 cut(s)	94, 213, 587
FokI	GGATG	2 cut(s)	446, 461
Fsp4HI	GCNGC	3 cut(s)	94, 213, 587
GlaI	GCGC	3 cut(s)	92, 167, 211
GluI	GCNGC	3 cut(s)	94, 213, 587
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	3 cut(s)	87, 162, 185
HapII	CCGG	3 cut(s)	159, 255, 274
HhaI	GCGC	3 cut(s)	93, 168, 212
Hin1II	CATG	3 cut(s)	31, 619, 642
Hin6I	GCGC	3 cut(s)	91, 166, 210
HinP1I	GCGC	3 cut(s)	91, 166, 210
HinfI	GANTC	3 cut(s)	244, 258, 602
HpaII	CCGG	3 cut(s)	159, 255, 274
HphI	GGTGA	6 cut(s)	58, 244, 253, 377, 388, 439
Hpy166II	GTNNAC	2 cut(s)	61, 295
Hpy188I	TCNGA	4 cut(s)	22, 416, 421, 489
Hpy188III	TCNNGA	8 cut(s)	38, 175, 220, 241, 352, 644, 659, 669
Hpy8I	GTNNAC	2 cut(s)	61, 295
Hpy99I	CGWCG	3 cut(s)	22, 44, 242
HpyAV	CCTTC	4 cut(s)	77, 367, 418, 424
HpyCH4IV	ACGT	1 cut(s)	237
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 97, 207
HpyF3I	CTNAG	2 cut(s)	420, 600
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	3 cut(s)	31, 619, 642
HspAI	GCGC	3 cut(s)	91, 166, 210
KpnI	GGTACC	1 cut(s)	274
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	7 cut(s)	51, 69, 177, 321, 348, 416, 489
LmnI	GCTCC	1 cut(s)	332
Lsp1109I	GCAGC	1 cut(s)	573
MabI	ACCWGGT	1 cut(s)	495
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	7 cut(s)	53, 71, 179, 323, 350, 418, 491
MboI	GATC	7 cut(s)	51, 69, 177, 321, 348, 416, 489
MboII	GAAGA	4 cut(s)	16, 61, 79, 382
MhlI	GDGCHC	1 cut(s)	487
MlyI	GAGTC	2 cut(s)	267, 611
MnlI	CCTC	7 cut(s)	70, 131, 145, 175, 239, 279, 422
MslI	CAYNNNNRTG	1 cut(s)	77
MspI	CCGG	3 cut(s)	159, 255, 274
MspR9I	CCNGG	2 cut(s)	187, 497
MvaI	CCWGG	2 cut(s)	187, 497
MvnI	CGCG	3 cut(s)	65, 91, 93
MwoI	GCNNNNNNNGC	3 cut(s)	93, 97, 207
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	7 cut(s)	51, 69, 177, 321, 348, 416, 489
NlaIII	CATG	3 cut(s)	31, 619, 642
NlaIV	GGNNCC	2 cut(s)	272, 334
NmuCI	GTSAC	1 cut(s)	259
PceI	AGGCCT	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	244
PinAI	ACCGGT	1 cut(s)	273
PkrI	GCNGC	3 cut(s)	95, 214, 588
PleI	GAGTC	2 cut(s)	266, 610
PpsI	GAGTC	2 cut(s)	266, 610
Psp6I	CCWGG	2 cut(s)	185, 495
PspGI	CCWGG	2 cut(s)	185, 495
PspN4I	GGNNCC	2 cut(s)	272, 334
PspPI	GGNCC	3 cut(s)	58, 86, 222
RsaI	GTAC	4 cut(s)	272, 278, 296, 545
RsaNI	GTAC	4 cut(s)	271, 277, 295, 544
RseI	CAYNNNNRTG	1 cut(s)	77
SatI	GCNGC	3 cut(s)	94, 213, 587
Sau3AI	GATC	7 cut(s)	51, 69, 177, 321, 348, 416, 489
Sau96I	GGNCC	3 cut(s)	58, 86, 222
SchI	GAGTC	2 cut(s)	267, 611
ScrFI	CCNGG	2 cut(s)	187, 497
SduI	GDGCHC	1 cut(s)	487
SexAI	ACCWGGT	1 cut(s)	495
SinI	GGWCC	2 cut(s)	58, 222
SmiMI	CAYNNNNRTG	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SseBI	AGGCCT	1 cut(s)	185
SsiI	CCGC	5 cut(s)	89, 93, 106, 213, 225
StuI	AGGCCT	1 cut(s)	185
StyD4I	CCNGG	2 cut(s)	185, 495
StyI	CCWWGG	2 cut(s)	27, 264
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	5 cut(s)	75, 180, 240, 320, 341
TaqII	GACCGA	1 cut(s)	465
TatI	WGTACW	1 cut(s)	543
TauI	GCSGC	2 cut(s)	96, 215
TfiI	GAWTC	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	1 cut(s)	586
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	2 cut(s)	58, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.