Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001380

Physical Location & Seq

Genomic Coordinates Forward (+)

21556937 .. 21558455

Gene Structure 1519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0126100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGTCCAAAACGGTGCGTTTCTGAATGTCATAAATATCCTCCTAGACTGTTGGTCACTGCTGACTGCTAAAACGAATGGCTGTCCTCTTCCGCCACATTTTCCAGTCTCCTCCTCCTCCTCCTCCGCTTCTCTACCTTCATCCAAACTAAGGCCATTCTTCTGCTCCGCATCAGCGTCATCCTCCATGGAGCCGCACCCAACAAAGTTCATGGAGTTCCCCTACGTCTCAACCCCTCACAAGAACCTCATGGTTCATCTTGTATCCACCGTCGAGACGCGCCTCGCCTCCCACCTCCTTCCTTCAACTCTCCCACCAGACGTACAATACTACCAGAACGACACCGCCACTAACCACGCGTCTCTTCACATCAGATCCGGCCTCCCCTCCTCCCCTTCCGACTTCACTAGTCCTCATCCTCGAAAAGACCTTGTTCTCCCCCCAGACTACCTCAAAACATTTTATGAGGATACAAAACTGGACACCCCAAGGCAAAAGCTCGAGAAACTAGCTGAGGTGAAACCTTACTTCTCCTCGTCGCTTTACATCCGCAGCGTTGTGTCTCCTACCGCAATTTTGGTTCGTGTAGAAGCAGTAGAGGGAGGGCTAAGCTTAGAGGAGATCATAGAGAACCATATCGGTCCGGTTGCAAAGGAAGTGTTGGGCATCTGGTTGGAACAATGCGCTCTTGGGAAGAGAGAAGTAGGGGAGAATGAGAAAGCTGAACTGAAGAAGAGGGATGATTTGGTTAAGAGAAAGACTATTGAGATTGATCTGGGCTCGAATTTTCCTAGATTGTTTGGACCTGATGCTGCAGATCGAGTATTGGGAGCCATTCGTGAAGCTTATAGGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009955 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048856 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

285

Amino Acids

31.56

Weight (kDa)

6.76

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RCC_reductase	PF06405	79 - 135	6.1e-16	Red chlorophyll catabolite reductase (RCC reductase)
RCC_reductase	PF06405	139 - 281	2.6e-61	Red chlorophyll catabolite reductase (RCC reductase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33120 AT1G33140 AT4G10450 AT4G10450
fragaria_vesca	FvH4_5g10230 FvH4_7g33110
malus_domestica	MD01G1230300.v1.1 MD07G1302000.v1.1 MD16G1260300.v1.1
prunus_persica	Prupe.2G321000_v2.0.a1 Prupe.5G136400_v2.0.a1
pyrus_communis	pycom01g23830 pycom07g09170 pycom07g27520 pycom12g07060
rosa_chinensis	RchiOBHm_Chr1g0334541 RchiOBHm_Chr1g0334651 RchiOBHm_Chr1g0383161 RchiOBHm_Chr2g0169651 RchiOBHm_Chr3g0462551 RchiOBHm_Chr7g0187991
rosa_laevigata	RLG00000004736 RLG00000026125
rosa_multiflora	Rmu_sc0003624.1_g000019 Rmu_sc0005044.1_g000024 Rmu_sc0008563.1_g000005 Rmu_sc0013280.1_g000007 Rmu_sc0023940.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081920 Rroxscaffold_3G00266830 Rroxscaffold_4G00277530
rosa_rugosa	Rorug01G0126100 Rorug01G0439300
rosa_samantha	Rh1AG139700 Rh1AG464900 Rh1BG422200 Rh1CG131600 Rh1CG435500 Rh1DG143700 Rh1DG153800 Rh1DG454900 Rh3AG115500 Rh3BG118900 Rh3CG122300 Rh7AG091500 Rh7BG093000 Rh7CG092300 Rh7DG093700
rosa_wichuraiana	Rw1G009540 Rw1G009550 Rw2G050900 Rw3G009780 Rw7G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	280, 359
AciI	CCGC	7 cut(s)	92, 126, 168, 194, 345, 550, 570
AclWI	GGATC	1 cut(s)	369
AcsI	RAATTY	1 cut(s)	784
AcuI	CTGAAG	1 cut(s)	749
AfaI	GTAC	1 cut(s)	324
AfiI	CCNNNNNNNGG	1 cut(s)	150
AflIII	ACRYGT	1 cut(s)	357
AgsI	TTSAA	1 cut(s)	306
AhdI	GACNNNNNGTC	1 cut(s)	52
AhlI	ACTAGT	1 cut(s)	407
AluBI	AGCT	5 cut(s)	499, 512, 612, 722, 845
AluI	AGCT	5 cut(s)	499, 512, 612, 722, 845
Alw26I	GTCTC	5 cut(s)	112, 232, 269, 366, 567
AlwI	GGATC	1 cut(s)	369
Ama87I	CYCGRG	1 cut(s)	500
AoxI	GGCC	2 cut(s)	152, 379
ApeKI	GCWGC	2 cut(s)	552, 812
ApoI	RAATTY	1 cut(s)	784
AspLEI	GCGC	2 cut(s)	282, 686
AspS9I	GGNCC	3 cut(s)	4, 641, 803
AsuHPI	GGTGA	1 cut(s)	529
AvaI	CYCGRG	1 cut(s)	500
AvaII	GGWCC	3 cut(s)	4, 641, 803
BanII	GRGCYC	1 cut(s)	782
BbvCI	CCTCAGC	1 cut(s)	513
BbvI	GCAGC	2 cut(s)	564, 799
BciVI	GTATCC	2 cut(s)	274, 463
BcoDI	GTCTC	5 cut(s)	112, 232, 269, 366, 567
BcuI	ACTAGT	1 cut(s)	407
BfaI	CTAG	4 cut(s)	44, 408, 509, 792
BfmI	CTRYAG	1 cut(s)	813
BfuI	GTATCC	2 cut(s)	274, 463
BisI	GCNGC	3 cut(s)	194, 553, 813
BlpI	GCTNAGC	1 cut(s)	608
BlsI	GCNGC	3 cut(s)	195, 554, 814
Bme18I	GGWCC	3 cut(s)	4, 641, 803
BmeRI	GACNNNNNGTC	1 cut(s)	52
BmeT110I	CYCGRG	1 cut(s)	500
BmgT120I	GGNCC	3 cut(s)	4, 641, 803
BmiI	GGNNCC	2 cut(s)	192, 832
BmsI	GCATC	3 cut(s)	179, 675, 799
Bpu10I	CCTNAGC	1 cut(s)	513
Bpu1102I	GCTNAGC	1 cut(s)	608
BsaJI	CCNNGG	2 cut(s)	186, 488
BsaWI	WCCGGW	1 cut(s)	643
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse1I	ACTGG	2 cut(s)	104, 483
BseDI	CCNNGG	2 cut(s)	186, 488
BseGI	GGATG	5 cut(s)	140, 179, 415, 546, 745
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	2 cut(s)	104, 483
BseRI	GAGGAG	8 cut(s)	100, 103, 106, 109, 112, 379, 523, 632
BseXI	GCAGC	2 cut(s)	564, 799
Bsh1236I	CGCG	2 cut(s)	280, 359
BshFI	GGCC	2 cut(s)	154, 381
BsiHKCI	CYCGRG	1 cut(s)	500
BsiSI	CCGG	2 cut(s)	378, 644
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmAI	GTCTC	5 cut(s)	112, 232, 269, 366, 567
BsmBI	CGTCTC	3 cut(s)	232, 269, 366
BsnI	GGCC	2 cut(s)	154, 381
BsoBI	CYCGRG	1 cut(s)	500
Bsp1286I	GDGCHC	1 cut(s)	782
Bsp143I	GATC	4 cut(s)	374, 621, 772, 817
Bsp1720I	GCTNAGC	1 cut(s)	608
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	7 cut(s)	92, 126, 168, 194, 345, 550, 570
BspANI	GGCC	2 cut(s)	154, 381
BspCNI	CTCAG	1 cut(s)	505
BspFNI	CGCG	2 cut(s)	280, 359
BspLI	GGNNCC	2 cut(s)	192, 832
BspMAI	CTGCAG	1 cut(s)	817
BspPI	GGATC	1 cut(s)	369
BsrI	ACTGG	2 cut(s)	104, 483
BssECI	CCNNGG	2 cut(s)	186, 488
BssMI	GATC	4 cut(s)	374, 621, 772, 817
BssT1I	CCWWGG	2 cut(s)	186, 488
Bst4CI	ACNGT	3 cut(s)	14, 50, 271
Bst6I	CTCTTC	4 cut(s)	93, 369, 689, 728
BstDEI	CTNAG	4 cut(s)	149, 513, 608, 613
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	5 cut(s)	140, 179, 415, 546, 745
BstFNI	CGCG	2 cut(s)	280, 359
BstHHI	GCGC	2 cut(s)	282, 686
BstKTI	GATC	4 cut(s)	377, 624, 775, 820
BstMAI	GTCTC	5 cut(s)	112, 232, 269, 366, 567
BstMBI	GATC	4 cut(s)	374, 621, 772, 817
BstSFI	CTRYAG	1 cut(s)	813
BstUI	CGCG	2 cut(s)	280, 359
BstV1I	GCAGC	2 cut(s)	564, 799
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
BsuI	GTATCC	2 cut(s)	274, 463
BsuRI	GGCC	2 cut(s)	154, 381
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	5 cut(s)	140, 179, 415, 546, 745
BtsI	GCAGTG	1 cut(s)	56
BtsIMutI	CAGTG	1 cut(s)	56
CfoI	GCGC	2 cut(s)	282, 686
Cfr13I	GGNCC	3 cut(s)	4, 641, 803
CpoI	CGGWCCG	1 cut(s)	641
CseI	GACGC	3 cut(s)	165, 286, 348
Csp6I	GTAC	1 cut(s)	323
CspI	CGGWCCG	1 cut(s)	641
CviAII	CATG	3 cut(s)	187, 211, 250
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	4 cut(s)	149, 513, 608, 613
DpnI	GATC	4 cut(s)	376, 623, 774, 819
DpnII	GATC	4 cut(s)	374, 621, 772, 817
DriI	GACNNNNNGTC	1 cut(s)	52
Eam1104I	CTCTTC	4 cut(s)	93, 369, 689, 728
Eam1105I	GACNNNNNGTC	1 cut(s)	52
EarI	CTCTTC	4 cut(s)	93, 369, 689, 728
EciI	GGCGGA	1 cut(s)	81
Eco130I	CCWWGG	2 cut(s)	186, 488
Eco24I	GRGCYC	1 cut(s)	782
Eco47I	GGWCC	3 cut(s)	4, 641, 803
Eco57I	CTGAAG	1 cut(s)	749
Eco88I	CYCGRG	1 cut(s)	500
EcoT14I	CCWWGG	2 cut(s)	186, 488
EcoT38I	GRGCYC	1 cut(s)	782
ErhI	CCWWGG	2 cut(s)	186, 488
Esp3I	CGTCTC	3 cut(s)	232, 269, 366
FaeI	CATG	3 cut(s)	190, 214, 253
FaiI	YATR	9 cut(s)	32, 188, 212, 251, 465, 626, 636, 849, 856
FatI	CATG	3 cut(s)	186, 210, 249
Fnu4HI	GCNGC	3 cut(s)	194, 553, 813
FokI	GGATG	5 cut(s)	127, 166, 402, 533, 752
FriOI	GRGCYC	1 cut(s)	782
Fsp4HI	GCNGC	3 cut(s)	194, 553, 813
FspBI	CTAG	4 cut(s)	44, 408, 509, 792
GlaI	GCGC	2 cut(s)	281, 685
GluI	GCNGC	3 cut(s)	194, 553, 813
HaeIII	GGCC	2 cut(s)	154, 381
HapII	CCGG	2 cut(s)	378, 644
HgaI	GACGC	3 cut(s)	165, 286, 348
HhaI	GCGC	2 cut(s)	282, 686
Hin1II	CATG	3 cut(s)	190, 214, 253
Hin6I	GCGC	2 cut(s)	280, 684
HinP1I	GCGC	2 cut(s)	280, 684
HindIII	AAGCTT	2 cut(s)	610, 843
HpaII	CCGG	2 cut(s)	378, 644
HphI	GGTGA	1 cut(s)	529
Hpy188I	TCNGA	3 cut(s)	24, 374, 400
Hpy188III	TCNNGA	3 cut(s)	274, 502, 839
Hpy99I	CGWCG	2 cut(s)	275, 541
HpyAV	CCTTC	4 cut(s)	147, 308, 312, 405
HpyCH4III	ACNGT	3 cut(s)	14, 50, 271
HpyCH4IV	ACGT	2 cut(s)	225, 321
HpyCH4V	TGCA	2 cut(s)	650, 815
HpyF3I	CTNAG	4 cut(s)	149, 513, 608, 613
HpySE526I	ACGT	2 cut(s)	225, 321
Hsp92II	CATG	3 cut(s)	190, 214, 253
HspAI	GCGC	2 cut(s)	280, 684
Kzo9I	GATC	4 cut(s)	374, 621, 772, 817
LmnI	GCTCC	3 cut(s)	170, 190, 830
Lsp1109I	GCAGC	2 cut(s)	564, 799
LweI	GCATC	3 cut(s)	179, 675, 799
MaeI	CTAG	4 cut(s)	44, 408, 509, 792
MaeII	ACGT	2 cut(s)	225, 321
MaeIII	GTNAC	1 cut(s)	54
MalI	GATC	4 cut(s)	376, 623, 774, 819
MboI	GATC	4 cut(s)	374, 621, 772, 817
MboII	GAAGA	6 cut(s)	80, 151, 356, 706, 742, 745
MflI	RGATCY	1 cut(s)	374
MhlI	GDGCHC	1 cut(s)	782
MluCI	AATT	2 cut(s)	573, 784
MluI	ACGCGT	1 cut(s)	357
MmeI	TCCRAC	2 cut(s)	423, 654
MseI	TTAA	1 cut(s)	750
MspI	CCGG	2 cut(s)	378, 644
MvnI	CGCG	2 cut(s)	280, 359
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	4 cut(s)	374, 621, 772, 817
NlaIII	CATG	3 cut(s)	190, 214, 253
NlaIV	GGNNCC	2 cut(s)	192, 832
NmuCI	GTSAC	1 cut(s)	54
PaeR7I	CTCGAG	1 cut(s)	500
PkrI	GCNGC	3 cut(s)	195, 554, 814
PspN4I	GGNNCC	2 cut(s)	192, 832
PspPI	GGNCC	3 cut(s)	4, 641, 803
PstI	CTGCAG	1 cut(s)	817
PsuI	RGATCY	1 cut(s)	374
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
Rsr2I	CGGWCCG	1 cut(s)	641
RsrII	CGGWCCG	1 cut(s)	641
SaqAI	TTAA	1 cut(s)	750
SatI	GCNGC	3 cut(s)	194, 553, 813
Sau3AI	GATC	4 cut(s)	374, 621, 772, 817
Sau96I	GGNCC	3 cut(s)	4, 641, 803
SduI	GDGCHC	1 cut(s)	782
SfaNI	GCATC	3 cut(s)	179, 675, 799
SfcI	CTRYAG	1 cut(s)	813
Sfr274I	CTCGAG	1 cut(s)	500
SinI	GGWCC	3 cut(s)	4, 641, 803
SlaI	CTCGAG	1 cut(s)	500
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
SpeI	ACTAGT	1 cut(s)	407
Sse9I	AATT	2 cut(s)	573, 784
SsiI	CCGC	7 cut(s)	92, 126, 168, 194, 345, 550, 570
SspMI	CTAG	4 cut(s)	44, 408, 509, 792
StyI	CCWWGG	2 cut(s)	186, 488
TaaI	ACNGT	3 cut(s)	14, 50, 271
TaiI	ACGT	2 cut(s)	228, 324
TaqI	TCGA	5 cut(s)	273, 421, 501, 782, 820
TaqII	GACCGA	1 cut(s)	629
TasI	AATT	2 cut(s)	573, 784
TauI	GCSGC	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	750
Tru9I	TTAA	1 cut(s)	750
TscAI	CASTG	1 cut(s)	63
TseFI	GTSAC	1 cut(s)	54
TseI	GCWGC	2 cut(s)	552, 812
Tsp45I	GTSAC	1 cut(s)	54
TspDTI	ATGAA	3 cut(s)	129, 199, 245
TspRI	CASTG	1 cut(s)	63
VpaK11BI	GGWCC	3 cut(s)	4, 641, 803
XapI	RAATTY	1 cut(s)	784
XhoI	CTCGAG	1 cut(s)	500
XspI	CTAG	4 cut(s)	44, 408, 509, 792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.