Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001380

Physical Location & Seq

Genomic Coordinates Forward (+)

68043702 .. 68045171

Gene Structure 1470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG464900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGTTCGGCACTCGCAAGACCAGCGCCGCCATCAGGACCGCGAGCACGTCGAGAATCTCATCACCGGAGTCACCAAGGGGTACCGGTACAAGATGAGGTTCGTGTACGCTCATTTTCCCATCAACGCTTCGATCACTAATGGAGCTAAGTCGATTGAGATCAGGAACTTTCTCGGTGAGAAGAAGGTGAGAAAGGTGAAGGATGAGCTGATATTGGATGGCAATGATATTGAACTTGTTTCTCGGTCTTGTGCTCTGATCAACCAGAAATGCCATGTCAAGAACAAGGATATCAGGAAGTTTCTTGATGGTATCTATGTTAGCGAGAGGGCAACCATCAATACCGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009955 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048856 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

117

Amino Acids

13.69

Weight (kDa)

9.48

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33120 AT1G33140 AT4G10450 AT4G10450
fragaria_vesca	FvH4_5g10230 FvH4_7g33110
malus_domestica	MD01G1230300.v1.1 MD07G1302000.v1.1 MD16G1260300.v1.1
prunus_persica	Prupe.2G321000_v2.0.a1 Prupe.5G136400_v2.0.a1
pyrus_communis	pycom01g23830 pycom07g09170 pycom07g27520 pycom12g07060
rosa_chinensis	RchiOBHm_Chr1g0334541 RchiOBHm_Chr1g0334651 RchiOBHm_Chr1g0383161 RchiOBHm_Chr2g0169651 RchiOBHm_Chr3g0462551 RchiOBHm_Chr7g0187991
rosa_laevigata	RLG00000004736 RLG00000026125
rosa_multiflora	Rmu_sc0003624.1_g000019 Rmu_sc0005044.1_g000024 Rmu_sc0008563.1_g000005 Rmu_sc0013280.1_g000007 Rmu_sc0023940.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081920 Rroxscaffold_3G00266830 Rroxscaffold_4G00277530
rosa_rugosa	Rorug01G0126100 Rorug01G0439300
rosa_samantha	Rh1AG139700 Rh1AG464900 Rh1BG422200 Rh1CG131600 Rh1CG435500 Rh1DG143700 Rh1DG153800 Rh1DG454900 Rh3AG115500 Rh3BG118900 Rh3CG122300 Rh7AG091500 Rh7BG093000 Rh7CG092300 Rh7DG093700
rosa_wichuraiana	Rw1G009540 Rw1G009550 Rw2G050900 Rw3G009780 Rw7G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	81
AccB1I	GGYRCC	1 cut(s)	81
AccII	CGCG	1 cut(s)	42
AciI	CCGC	2 cut(s)	28, 40
AfaI	GTAC	3 cut(s)	83, 89, 107
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgeI	ACCGGT	1 cut(s)	84
AgsI	TTSAA	1 cut(s)	233
AjiI	CACGTC	1 cut(s)	49
AluBI	AGCT	2 cut(s)	146, 208
AluI	AGCT	2 cut(s)	146, 208
Alw21I	GWGCWC	2 cut(s)	48, 256
AsiGI	ACCGGT	1 cut(s)	84
Asp718I	GGTACC	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	5 cut(s)	55, 64, 188, 199, 208
AvaII	GGWCC	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	81
Bbv12I	GWGCWC	2 cut(s)	48, 256
BccI	CCATC	5 cut(s)	39, 128, 212, 302, 344
BclI	TGATCA	1 cut(s)	258
BfoI	RGCGCY	1 cut(s)	28
BisI	GCNGC	1 cut(s)	28
BlsI	GCNGC	1 cut(s)	29
Bme18I	GGWCC	1 cut(s)	37
BmgBI	CACGTC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	83
BsaBI	GATNNNNATC	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	75, 345
BsaWI	WCCGGW	2 cut(s)	65, 84
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse118I	RCCGGY	1 cut(s)	84
Bse3DI	GCAATG	1 cut(s)	229
Bse8I	GATNNNNATC	1 cut(s)	158
BseDI	CCNNGG	2 cut(s)	75, 345
BseGI	GGATG	2 cut(s)	208, 223
BseJI	GATNNNNATC	1 cut(s)	158
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMI	GCAATG	1 cut(s)	229
Bsh1236I	CGCG	1 cut(s)	42
BshNI	GGYRCC	1 cut(s)	81
BshTI	ACCGGT	1 cut(s)	84
BsiHKAI	GWGCWC	2 cut(s)	48, 256
BsiSI	CCGG	2 cut(s)	66, 85
BslI	CCNNNNNNNGG	1 cut(s)	34
Bsp1286I	GDGCHC	2 cut(s)	48, 256
Bsp143I	GATC	3 cut(s)	132, 159, 258
BspACI	CCGC	2 cut(s)	28, 40
BspFNI	CGCG	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	81
BsrDI	GCAATG	1 cut(s)	229
BsrFI	RCCGGY	1 cut(s)	84
BssAI	RCCGGY	1 cut(s)	84
BssECI	CCNNGG	2 cut(s)	75, 345
BssMI	GATC	3 cut(s)	132, 159, 258
BssT1I	CCWWGG	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	44
BstDEI	CTNAG	1 cut(s)	147
BstF5I	GGATG	2 cut(s)	208, 223
BstFNI	CGCG	1 cut(s)	42
BstH2I	RGCGCY	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	3 cut(s)	135, 162, 261
BstMBI	GATC	3 cut(s)	132, 159, 258
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstUI	CGCG	1 cut(s)	42
BtrI	CACGTC	1 cut(s)	49
BtsCI	GGATG	2 cut(s)	208, 223
Cac8I	GCNNGC	1 cut(s)	44
CfoI	GCGC	1 cut(s)	27
Cfr10I	RCCGGY	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	37
Csp6I	GTAC	3 cut(s)	82, 88, 106
CspAI	ACCGGT	1 cut(s)	84
CviAII	CATG	1 cut(s)	275
CviJI	RGCY	2 cut(s)	146, 208
CviKI_1	RGCY	2 cut(s)	146, 208
CviQI	GTAC	3 cut(s)	82, 88, 106
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	3 cut(s)	134, 161, 260
DpnII	GATC	3 cut(s)	132, 159, 258
Eco130I	CCWWGG	1 cut(s)	75
Eco32I	GATATC	1 cut(s)	292
Eco47I	GGWCC	1 cut(s)	37
EcoRV	GATATC	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	1 cut(s)	278
FaiI	YATR	2 cut(s)	276, 318
FatI	CATG	1 cut(s)	274
FbaI	TGATCA	1 cut(s)	258
Fnu4HI	GCNGC	1 cut(s)	28
FokI	GGATG	2 cut(s)	215, 230
Fsp4HI	GCNGC	1 cut(s)	28
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	1 cut(s)	28
HaeII	RGCGCY	1 cut(s)	28
HapII	CCGG	2 cut(s)	66, 85
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	1 cut(s)	278
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HinfI	GANTC	2 cut(s)	55, 69
HpaII	CCGG	2 cut(s)	66, 85
HphI	GGTGA	5 cut(s)	55, 64, 188, 199, 208
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	6 cut(s)	35, 52, 163, 280, 295, 305
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	178, 193
HpyCH4IV	ACGT	1 cut(s)	48
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	1 cut(s)	278
HspAI	GCGC	1 cut(s)	25
KpnI	GGTACC	1 cut(s)	85
Ksp22I	TGATCA	1 cut(s)	258
Kzo9I	GATC	3 cut(s)	132, 159, 258
LmnI	GCTCC	1 cut(s)	143
LpnPI	CCDG	7 cut(s)	20, 35, 79, 98, 148, 278, 280
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	3 cut(s)	134, 161, 260
MboI	GATC	3 cut(s)	132, 159, 258
MboII	GAAGA	1 cut(s)	193
MhlI	GDGCHC	2 cut(s)	48, 256
MlyI	GAGTC	1 cut(s)	78
MnlI	CCTC	3 cut(s)	90, 321, 340
MspI	CCGG	2 cut(s)	66, 85
MvnI	CGCG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	22
NdeII	GATC	3 cut(s)	132, 159, 258
NlaIII	CATG	1 cut(s)	278
NlaIV	GGNNCC	1 cut(s)	83
NmuCI	GTSAC	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	55
PinAI	ACCGGT	1 cut(s)	84
PkrI	GCNGC	1 cut(s)	29
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	83
PspPI	GGNCC	1 cut(s)	37
RsaI	GTAC	3 cut(s)	83, 89, 107
RsaNI	GTAC	3 cut(s)	82, 88, 106
SatI	GCNGC	1 cut(s)	28
Sau3AI	GATC	3 cut(s)	132, 159, 258
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	1 cut(s)	78
SduI	GDGCHC	2 cut(s)	48, 256
SetI	ASST	6 cut(s)	51, 101, 148, 189, 198, 210
SinI	GGWCC	1 cut(s)	37
SsiI	CCGC	2 cut(s)	28, 40
StyI	CCWWGG	1 cut(s)	75
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	3 cut(s)	51, 131, 152
TaqII	GACCGA	1 cut(s)	234
TauI	GCSGC	1 cut(s)	30
TfiI	GAWTC	1 cut(s)	55
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
VpaK11BI	GGWCC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.