Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003624.1

Orthogroup ID

OG0001380

Physical Location & Seq

Genomic Coordinates Forward (+)

74750 .. 75337

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003624.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgaagacgattctggcctcggagagcatggacatccccgacggcgtcaccatcaaggtgaaggccaaggtcatcgaggtcgaaggtccccgcgggaagctcacccgaaacttcaagcacctcaacctcgacttcgagctcgtcaccgacgagtcgacggggaaaaagaagctgaagatcgaggcctggttcggcacccgcaagaccagcgccgccatccgcaccgcgctcagccacgtcagcaacctcatcatcggcgtcaccaagggctaccgctacaagatgaggttcgtctacgctcactttccgatcaacgcctccatccccagctccagcaacgccatcgagatccgcaacttcctgggagagaagaaagtcaggaaggtgaaggatgagctggttttggacgggaacgacatcgagttggtttcgaggtcggcggcgctgatcaaccagaagtgtcatgtgaagaacaaggacatcaggaagtttctggatgggatctacgtcagcgagaggagcaccattaccaccggagacgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

181

Amino Acids

20.32

Weight (kDa)

9.68

Isoelectric Point (pI)

24.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33120 AT1G33140 AT4G10450 AT4G10450
fragaria_vesca	FvH4_5g10230 FvH4_7g33110
malus_domestica	MD01G1230300.v1.1 MD07G1302000.v1.1 MD16G1260300.v1.1
prunus_persica	Prupe.2G321000_v2.0.a1 Prupe.5G136400_v2.0.a1
pyrus_communis	pycom01g23830 pycom07g09170 pycom07g27520 pycom12g07060
rosa_chinensis	RchiOBHm_Chr1g0334541 RchiOBHm_Chr1g0334651 RchiOBHm_Chr1g0383161 RchiOBHm_Chr2g0169651 RchiOBHm_Chr3g0462551 RchiOBHm_Chr7g0187991
rosa_laevigata	RLG00000004736 RLG00000026125
rosa_multiflora	Rmu_sc0003624.1_g000019 Rmu_sc0005044.1_g000024 Rmu_sc0008563.1_g000005 Rmu_sc0013280.1_g000007 Rmu_sc0023940.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081920 Rroxscaffold_3G00266830 Rroxscaffold_4G00277530
rosa_rugosa	Rorug01G0126100 Rorug01G0439300
rosa_samantha	Rh1AG139700 Rh1AG464900 Rh1BG422200 Rh1CG131600 Rh1CG435500 Rh1DG143700 Rh1DG153800 Rh1DG454900 Rh3AG115500 Rh3BG118900 Rh3CG122300 Rh7AG091500 Rh7BG093000 Rh7CG092300 Rh7DG093700
rosa_wichuraiana	Rw1G009540 Rw1G009550 Rw2G050900 Rw3G009780 Rw7G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	194
AccI	GTMKAC	2 cut(s)	155, 294
AccII	CGCG	2 cut(s)	93, 227
AciI	CCGC	9 cut(s)	91, 93, 199, 213, 220, 225, 274, 352, 440
AclWI	GGATC	2 cut(s)	343, 509
AcuI	CTGAAG	1 cut(s)	194
AcyI	GRCGYC	2 cut(s)	45, 258
AgsI	TTSAA	1 cut(s)	115
AjiI	CACGTC	1 cut(s)	238
AjnI	CCWGG	2 cut(s)	185, 360
AluBI	AGCT	5 cut(s)	100, 139, 172, 330, 397
AluI	AGCT	5 cut(s)	100, 139, 172, 330, 397
Alw21I	GWGCWC	2 cut(s)	141, 524
Alw26I	GTCTC	1 cut(s)	531
AlwI	GGATC	2 cut(s)	343, 509
AoxI	GGCC	3 cut(s)	15, 63, 183
AspLEI	GCGC	3 cut(s)	212, 229, 445
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	6 cut(s)	40, 70, 94, 136, 253, 397
AvaII	GGWCC	1 cut(s)	86
BanI	GGYRCC	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	2 cut(s)	141, 524
BccI	CCATC	5 cut(s)	59, 224, 329, 350, 491
BceAI	ACGGC	1 cut(s)	58
BcgI	CGANNNNNNTGC	2 cut(s)	325, 359
BciT130I	CCWGG	2 cut(s)	187, 362
BclI	TGATCA	1 cut(s)	447
BcoDI	GTCTC	1 cut(s)	531
BfoI	RGCGCY	2 cut(s)	213, 446
BisI	GCNGC	2 cut(s)	213, 441
BlpI	GCTNAGC	1 cut(s)	230
BlsI	GCNGC	2 cut(s)	214, 442
Bme1390I	CCNGG	2 cut(s)	187, 362
Bme18I	GGWCC	1 cut(s)	86
BmgBI	CACGTC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	2 cut(s)	88, 196
BmrFI	CCNGG	2 cut(s)	187, 362
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	316
Bpu1102I	GCTNAGC	1 cut(s)	230
BsaHI	GRCGYC	2 cut(s)	45, 258
BsaJI	CCNNGG	5 cut(s)	18, 66, 91, 264, 361
BsaWI	WCCGGW	1 cut(s)	533
BseBI	CCWGG	2 cut(s)	187, 362
BseDI	CCNNGG	5 cut(s)	18, 66, 91, 264, 361
BseGI	GGATG	5 cut(s)	33, 216, 321, 397, 502
BseMII	CTCAG	1 cut(s)	244
BseRI	GAGGAG	1 cut(s)	532
BseYI	CCCAGC	1 cut(s)	326
Bsh1236I	CGCG	2 cut(s)	93, 227
BshFI	GGCC	3 cut(s)	17, 65, 185
BshNI	GGYRCC	1 cut(s)	194
BsiHKAI	GWGCWC	2 cut(s)	141, 524
BsiSI	CCGG	1 cut(s)	534
BslFI	GGGAC	1 cut(s)	72
BsmAI	GTCTC	1 cut(s)	531
BsmBI	CGTCTC	1 cut(s)	531
BsmFI	GGGAC	1 cut(s)	72
BsnI	GGCC	3 cut(s)	17, 65, 185
Bsp1286I	GDGCHC	2 cut(s)	141, 524
Bsp143I	GATC	5 cut(s)	177, 309, 348, 447, 501
Bsp1720I	GCTNAGC	1 cut(s)	230
BspACI	CCGC	9 cut(s)	91, 93, 199, 213, 220, 225, 274, 352, 440
BspANI	GGCC	3 cut(s)	17, 65, 185
BspCNI	CTCAG	1 cut(s)	243
BspFNI	CGCG	2 cut(s)	93, 227
BspLI	GGNNCC	2 cut(s)	88, 196
BspPI	GGATC	2 cut(s)	343, 509
BspT107I	GGYRCC	1 cut(s)	194
BssECI	CCNNGG	5 cut(s)	18, 66, 91, 264, 361
BssMI	GATC	5 cut(s)	177, 309, 348, 447, 501
BssNI	GRCGYC	2 cut(s)	45, 258
BssT1I	CCWWGG	2 cut(s)	66, 264
Bst2UI	CCWGG	2 cut(s)	187, 362
BstACI	GRCGYC	2 cut(s)	45, 258
BstDEI	CTNAG	1 cut(s)	230
BstDSI	CCRYGG	1 cut(s)	91
BstF5I	GGATG	5 cut(s)	33, 216, 321, 397, 502
BstFNI	CGCG	2 cut(s)	93, 227
BstH2I	RGCGCY	2 cut(s)	213, 446
BstHHI	GCGC	3 cut(s)	212, 229, 445
BstKTI	GATC	5 cut(s)	180, 312, 351, 450, 504
BstMAI	GTCTC	1 cut(s)	531
BstMBI	GATC	5 cut(s)	177, 309, 348, 447, 501
BstMWI	GCNNNNNNNGC	3 cut(s)	207, 240, 519
BstNI	CCWGG	2 cut(s)	187, 362
BstSCI	CCNGG	2 cut(s)	185, 360
BstUI	CGCG	2 cut(s)	93, 227
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	2 cut(s)	348, 501
BstYI	RGATCY	2 cut(s)	348, 501
BsuRI	GGCC	3 cut(s)	17, 65, 185
BtgI	CCRYGG	1 cut(s)	91
BtrI	CACGTC	1 cut(s)	238
BtsCI	GGATG	5 cut(s)	33, 216, 321, 397, 502
CfoI	GCGC	3 cut(s)	212, 229, 445
Cfr13I	GGNCC	1 cut(s)	86
Cfr42I	CCGCGG	1 cut(s)	94
CseI	GACGC	2 cut(s)	34, 247
CviAII	CATG	2 cut(s)	28, 464
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	5 cut(s)	179, 311, 350, 449, 503
DpnII	GATC	5 cut(s)	177, 309, 348, 447, 501
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	2 cut(s)	66, 264
Eco147I	AGGCCT	1 cut(s)	185
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	86
Eco53kI	GAGCTC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	194
EcoICRI	GAGCTC	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	86
EcoRII	CCWGG	2 cut(s)	185, 360
EcoT14I	CCWWGG	2 cut(s)	66, 264
EcoT38I	GRGCYC	1 cut(s)	141
ErhI	CCWWGG	2 cut(s)	66, 264
Esp3I	CGTCTC	1 cut(s)	531
FaeI	CATG	2 cut(s)	31, 467
FaiI	YATR	2 cut(s)	29, 465
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	2 cut(s)	27, 463
FauI	CCCGC	3 cut(s)	86, 98, 206
FbaI	TGATCA	1 cut(s)	447
FblI	GTMKAC	2 cut(s)	155, 294
Fnu4HI	GCNGC	2 cut(s)	213, 441
FokI	GGATG	5 cut(s)	20, 203, 308, 404, 509
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	2 cut(s)	213, 441
GlaI	GCGC	3 cut(s)	211, 228, 444
GluI	GCNGC	2 cut(s)	213, 441
GsaI	CCCAGC	1 cut(s)	330
GsuI	CTGGAG	1 cut(s)	316
HaeII	RGCGCY	2 cut(s)	213, 446
HaeIII	GGCC	3 cut(s)	17, 65, 185
HapII	CCGG	1 cut(s)	534
HgaI	GACGC	2 cut(s)	34, 247
HhaI	GCGC	3 cut(s)	212, 229, 445
Hin1I	GRCGYC	2 cut(s)	45, 258
Hin1II	CATG	2 cut(s)	31, 467
Hin6I	GCGC	3 cut(s)	210, 227, 443
HinP1I	GCGC	3 cut(s)	210, 227, 443
HincII	GTYRAC	1 cut(s)	156
HindII	GTYRAC	1 cut(s)	156
HinfI	GANTC	2 cut(s)	10, 152
HpaII	CCGG	1 cut(s)	534
HphI	GGTGA	6 cut(s)	40, 70, 94, 136, 253, 397
Hpy166II	GTNNAC	2 cut(s)	156, 295
Hpy188I	TCNGA	2 cut(s)	22, 309
Hpy188III	TCNNGA	4 cut(s)	346, 379, 484, 494
Hpy8I	GTNNAC	2 cut(s)	156, 295
Hpy99I	CGWCG	3 cut(s)	44, 152, 160
HpyAV	CCTTC	4 cut(s)	55, 77, 376, 382
HpyCH4IV	ACGT	2 cut(s)	237, 507
HpyF10VI	GCNNNNNNNGC	3 cut(s)	207, 240, 519
HpyF3I	CTNAG	1 cut(s)	230
HpySE526I	ACGT	2 cut(s)	237, 507
Hsp92I	GRCGYC	2 cut(s)	45, 258
Hsp92II	CATG	2 cut(s)	31, 467
HspAI	GCGC	3 cut(s)	210, 227, 443
Ksp22I	TGATCA	1 cut(s)	447
KspI	CCGCGG	1 cut(s)	94
Kzo9I	GATC	5 cut(s)	177, 309, 348, 447, 501
LmnI	GCTCC	2 cut(s)	335, 519
MaeII	ACGT	2 cut(s)	237, 507
MaeIII	GTNAC	3 cut(s)	46, 142, 259
MalI	GATC	5 cut(s)	179, 311, 350, 449, 503
MboI	GATC	5 cut(s)	177, 309, 348, 447, 501
MboII	GAAGA	4 cut(s)	16, 187, 382, 481
MflI	RGATCY	2 cut(s)	348, 501
MhlI	GDGCHC	2 cut(s)	141, 524
MlyI	GAGTC	1 cut(s)	161
MslI	CAYNNNNRTG	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	93
MspI	CCGG	1 cut(s)	534
MspR9I	CCNGG	2 cut(s)	187, 362
MvaI	CCWGG	2 cut(s)	187, 362
MvnI	CGCG	2 cut(s)	93, 227
MwoI	GCNNNNNNNGC	3 cut(s)	207, 240, 519
NdeII	GATC	5 cut(s)	177, 309, 348, 447, 501
NlaIII	CATG	2 cut(s)	31, 467
NlaIV	GGNNCC	2 cut(s)	88, 196
NmuCI	GTSAC	3 cut(s)	46, 142, 259
PceI	AGGCCT	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	10
PflFI	GACNNNGTC	1 cut(s)	44
PkrI	GCNGC	2 cut(s)	214, 442
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PpuMI	RGGWCCY	1 cut(s)	86
Psp124BI	GAGCTC	1 cut(s)	141
Psp5II	RGGWCCY	1 cut(s)	86
Psp6I	CCWGG	2 cut(s)	185, 360
PspFI	CCCAGC	1 cut(s)	326
PspGI	CCWGG	2 cut(s)	185, 360
PspN4I	GGNNCC	2 cut(s)	88, 196
PspPI	GGNCC	1 cut(s)	86
PspPPI	RGGWCCY	1 cut(s)	86
PsuI	RGATCY	2 cut(s)	348, 501
PsyI	GACNNNGTC	1 cut(s)	44
RseI	CAYNNNNRTG	1 cut(s)	56
SacI	GAGCTC	1 cut(s)	141
SacII	CCGCGG	1 cut(s)	94
SalI	GTCGAC	1 cut(s)	154
SatI	GCNGC	2 cut(s)	213, 441
Sau3AI	GATC	5 cut(s)	177, 309, 348, 447, 501
Sau96I	GGNCC	1 cut(s)	86
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	2 cut(s)	187, 362
SduI	GDGCHC	2 cut(s)	141, 524
Sfr303I	CCGCGG	1 cut(s)	94
SgrBI	CCGCGG	1 cut(s)	94
SinI	GGWCC	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	56
SseBI	AGGCCT	1 cut(s)	185
SsiI	CCGC	9 cut(s)	91, 93, 199, 213, 220, 225, 274, 352, 440
SstI	GAGCTC	1 cut(s)	141
StuI	AGGCCT	1 cut(s)	185
StyD4I	CCNGG	2 cut(s)	185, 360
StyI	CCWWGG	2 cut(s)	66, 264
TaiI	ACGT	2 cut(s)	240, 510
TaqI	TCGA	9 cut(s)	75, 81, 129, 135, 155, 180, 345, 420, 431
TauI	GCSGC	2 cut(s)	215, 443
TfiI	GAWTC	1 cut(s)	10
TseFI	GTSAC	3 cut(s)	46, 142, 259
Tsp45I	GTSAC	3 cut(s)	46, 142, 259
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	86
XmiI	GTMKAC	2 cut(s)	155, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.