Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001380

Physical Location & Seq

Genomic Coordinates Reverse (-)

32046231 .. 32046473

Gene Structure 243 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1260300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGCATTTCGTGTATGCGCATTTTCTCATCAATGCTTCCATCAATAATGAGACCAAGTCGATCGAGACCCGTAACTTTTTGGGTGAAAAGAAGGTGAGAAAGTTGACGGTTGTGGGTTCTGTTGAATGTTCGATTGTTTTTGCTGTATTTGTAGCACCCGTGTTCAACTGTGTAGTAGATTGCATAACAAGGTCATCTGGATTTATAATTTATGGCTTAGATGTATCTTGCTCAACTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009955 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048856 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

81

Amino Acids

8.84

Weight (kDa)

7.68

Isoelectric Point (pI)

33.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33120 AT1G33140 AT4G10450 AT4G10450
fragaria_vesca	FvH4_5g10230 FvH4_7g33110
malus_domestica	MD01G1230300.v1.1 MD07G1302000.v1.1 MD16G1260300.v1.1
prunus_persica	Prupe.2G321000_v2.0.a1 Prupe.5G136400_v2.0.a1
pyrus_communis	pycom01g23830 pycom07g09170 pycom07g27520 pycom12g07060
rosa_chinensis	RchiOBHm_Chr1g0334541 RchiOBHm_Chr1g0334651 RchiOBHm_Chr1g0383161 RchiOBHm_Chr2g0169651 RchiOBHm_Chr3g0462551 RchiOBHm_Chr7g0187991
rosa_laevigata	RLG00000004736 RLG00000026125
rosa_multiflora	Rmu_sc0003624.1_g000019 Rmu_sc0005044.1_g000024 Rmu_sc0008563.1_g000005 Rmu_sc0013280.1_g000007 Rmu_sc0023940.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081920 Rroxscaffold_3G00266830 Rroxscaffold_4G00277530
rosa_rugosa	Rorug01G0126100 Rorug01G0439300
rosa_samantha	Rh1AG139700 Rh1AG464900 Rh1BG422200 Rh1CG131600 Rh1CG435500 Rh1DG143700 Rh1DG153800 Rh1DG454900 Rh3AG115500 Rh3BG118900 Rh3CG122300 Rh7AG091500 Rh7BG093000 Rh7CG092300 Rh7DG093700
rosa_wichuraiana	Rw1G009540 Rw1G009550 Rw2G050900 Rw3G009780 Rw7G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	206
Acc16I	TGCGCA	1 cut(s)	18
AgsI	TTSAA	2 cut(s)	125, 166
Alw26I	GTCTC	2 cut(s)	44, 59
AspLEI	GCGC	1 cut(s)	19
AsuHPI	GGTGA	2 cut(s)	95, 106
BccI	CCATC	1 cut(s)	47
BcoDI	GTCTC	2 cut(s)	44, 59
BsaI	GGTCTC	2 cut(s)	44, 59
Bsh1285I	CGRYCG	1 cut(s)	63
BsiEI	CGRYCG	1 cut(s)	63
BsmAI	GTCTC	2 cut(s)	44, 59
Bso31I	GGTCTC	2 cut(s)	44, 59
Bsp143I	GATC	1 cut(s)	60
BspTNI	GGTCTC	2 cut(s)	44, 59
BssMI	GATC	1 cut(s)	60
Bst4CI	ACNGT	3 cut(s)	109, 170, 238
BstDEI	CTNAG	1 cut(s)	217
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	1 cut(s)	63
BstMAI	GTCTC	2 cut(s)	44, 59
BstMBI	GATC	1 cut(s)	60
BstMCI	CGRYCG	1 cut(s)	63
CfoI	GCGC	1 cut(s)	19
CviJI	RGCY	1 cut(s)	216
CviKI_1	RGCY	1 cut(s)	216
DdeI	CTNAG	1 cut(s)	217
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
Eco31I	GGTCTC	2 cut(s)	44, 59
EcoT22I	ATGCAT	1 cut(s)	6
FaiI	YATR	4 cut(s)	15, 185, 206, 213
FspAI	RTGCGCAY	1 cut(s)	18
FspI	TGCGCA	1 cut(s)	18
GlaI	GCGC	1 cut(s)	18
HhaI	GCGC	1 cut(s)	19
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HincII	GTYRAC	1 cut(s)	105
HindII	GTYRAC	1 cut(s)	105
HphI	GGTGA	2 cut(s)	95, 106
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188III	TCNNGA	2 cut(s)	64, 198
Hpy8I	GTNNAC	1 cut(s)	105
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	3 cut(s)	109, 170, 238
HpyCH4V	TGCA	2 cut(s)	4, 183
HpyF3I	CTNAG	1 cut(s)	217
HspAI	GCGC	1 cut(s)	17
Kzo9I	GATC	1 cut(s)	60
LpnPI	CCDG	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MluCI	AATT	1 cut(s)	207
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	241
NdeII	GATC	1 cut(s)	60
NsbI	TGCGCA	1 cut(s)	18
NsiI	ATGCAT	1 cut(s)	6
PflFI	GACNNNGTC	1 cut(s)	55
Ple19I	CGATCG	1 cut(s)	63
PsiI	TTATAA	1 cut(s)	206
PsyI	GACNNNGTC	1 cut(s)	55
PvuI	CGATCG	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	241
Sau3AI	GATC	1 cut(s)	60
SetI	ASST	2 cut(s)	96, 194
SgeI	CNNG	8 cut(s)	22, 67, 76, 81, 170, 172, 201, 210
Sse9I	AATT	1 cut(s)	207
TaaI	ACNGT	3 cut(s)	109, 170, 238
TaqI	TCGA	3 cut(s)	59, 63, 131
TasI	AATT	1 cut(s)	207
Tru1I	TTAA	1 cut(s)	241
Tru9I	TTAA	1 cut(s)	241
Tth111I	GACNNNGTC	1 cut(s)	55
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.