Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001380

Physical Location & Seq

Genomic Coordinates Forward (+)

12915662 .. 12916632

Gene Structure 971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G136400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAAGACGATACTATCCTCGGACTCCATGGAGATCCCCGACGGGGTGACCATAAAAGTGAAGGCGAAGGTGATAGAGGTGGAGGGTCCGCGAGGAAAGCTGACCCGAAACTTCAAGCACCTGAACCTGGACTTCGATCTGATCACGGACGAGGCCACCGGGAAGAAGAAGCTGAAGATCGAAGCCTGGTTCGGGACCCGCAAGACCAGCGCCGCCATCAGAACGGCTATCAGCCACGTCGAGAATCTGATCACCGGCGTCACCAAGGGCTACAGGTATAAGATGAGATTCGTCTACGCTCACTTTCCGATCAACGCTTCGATCCCCAACTCCAACAACGCGATCGAGATCCGAAACTTCTTGGGCGAGAAGAAGGTGAGGAAGGTGGAGATGCTTCAGGGCGTGAACATCTACCGGTCTGAGAAGGTGAAGGACGAGCTGGTTTTGGATGGAAACGACATCGAATTGGTGTCAAGGTCTGCTGCTCTCATAAACCAGAAGTGCCATGTGAAGAACAAGGATATTAGGAAGTTTCTTGATGGGATTTATGTGAGTGAGAAGAGGACGATAGCTGAAGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

195

Amino Acids

22.05

Weight (kDa)

9.54

Isoelectric Point (pI)

30.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33120 AT1G33140 AT4G10450 AT4G10450
fragaria_vesca	FvH4_5g10230 FvH4_7g33110
malus_domestica	MD01G1230300.v1.1 MD07G1302000.v1.1 MD16G1260300.v1.1
prunus_persica	Prupe.2G321000_v2.0.a1 Prupe.5G136400_v2.0.a1
pyrus_communis	pycom01g23830 pycom07g09170 pycom07g27520 pycom12g07060
rosa_chinensis	RchiOBHm_Chr1g0334541 RchiOBHm_Chr1g0334651 RchiOBHm_Chr1g0383161 RchiOBHm_Chr2g0169651 RchiOBHm_Chr3g0462551 RchiOBHm_Chr7g0187991
rosa_laevigata	RLG00000004736 RLG00000026125
rosa_multiflora	Rmu_sc0003624.1_g000019 Rmu_sc0005044.1_g000024 Rmu_sc0008563.1_g000005 Rmu_sc0013280.1_g000007 Rmu_sc0023940.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081920 Rroxscaffold_3G00266830 Rroxscaffold_4G00277530
rosa_rugosa	Rorug01G0126100 Rorug01G0439300
rosa_samantha	Rh1AG139700 Rh1AG464900 Rh1BG422200 Rh1CG131600 Rh1CG435500 Rh1DG143700 Rh1DG153800 Rh1DG454900 Rh3AG115500 Rh3BG118900 Rh3CG122300 Rh7AG091500 Rh7BG093000 Rh7CG092300 Rh7DG093700
rosa_wichuraiana	Rw1G009540 Rw1G009550 Rw2G050900 Rw3G009780 Rw7G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	2 cut(s)	91, 341
AciI	CCGC	3 cut(s)	89, 199, 213
AclWI	GGATC	3 cut(s)	28, 316, 343
AcuI	CTGAAG	2 cut(s)	194, 380
AcyI	GRCGYC	1 cut(s)	258
AfiI	CCNNNNNNNGG	3 cut(s)	43, 127, 192
AgeI	ACCGGT	1 cut(s)	414
AgsI	TTSAA	1 cut(s)	115
AjiI	CACGTC	1 cut(s)	238
AjnI	CCWGG	2 cut(s)	126, 185
AluBI	AGCT	4 cut(s)	100, 172, 439, 572
AluI	AGCT	4 cut(s)	100, 172, 439, 572
AlwI	GGATC	3 cut(s)	28, 316, 343
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	1 cut(s)	482
AsiGI	ACCGGT	1 cut(s)	414
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	2 cut(s)	86, 195
AsuC2I	CCSGG	1 cut(s)	160
AsuHPI	GGTGA	6 cut(s)	58, 82, 244, 253, 388, 439
AvaII	GGWCC	2 cut(s)	86, 195
BbsI	GAAGAC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	469
BccI	CCATC	3 cut(s)	224, 443, 533
BceAI	ACGGC	1 cut(s)	240
BciT130I	CCWGG	2 cut(s)	128, 187
BclI	TGATCA	2 cut(s)	141, 249
BcnI	CCSGG	1 cut(s)	160
BfmI	CTRYAG	1 cut(s)	271
BfoI	RGCGCY	1 cut(s)	213
BisI	GCNGC	2 cut(s)	213, 483
BlsI	GCNGC	2 cut(s)	214, 484
Bme1390I	CCNGG	3 cut(s)	128, 160, 187
Bme18I	GGWCC	2 cut(s)	86, 195
BmgBI	CACGTC	1 cut(s)	238
BmgT120I	GGNCC	2 cut(s)	86, 195
BmiI	GGNNCC	3 cut(s)	87, 196, 197
BmrFI	CCNGG	3 cut(s)	128, 160, 187
BmsI	GCATC	1 cut(s)	381
BpiI	GAAGAC	1 cut(s)	11
BpuMI	CCSGG	1 cut(s)	160
BsaBI	GATNNNNATC	1 cut(s)	347
BsaHI	GRCGYC	1 cut(s)	258
BsaJI	CCNNGG	3 cut(s)	18, 27, 264
BsaWI	WCCGGW	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 127, 192
Bse118I	RCCGGY	2 cut(s)	254, 414
Bse8I	GATNNNNATC	1 cut(s)	347
BseBI	CCWGG	2 cut(s)	128, 187
BseDI	CCNNGG	3 cut(s)	18, 27, 264
BseGI	GGATG	1 cut(s)	454
BseJI	GATNNNNATC	1 cut(s)	347
BseLI	CCNNNNNNNGG	3 cut(s)	43, 127, 192
BseMII	CTCAG	1 cut(s)	411
BseXI	GCAGC	1 cut(s)	469
Bsh1236I	CGCG	2 cut(s)	91, 341
Bsh1285I	CGRYCG	1 cut(s)	345
BshFI	GGCC	1 cut(s)	155
BshTI	ACCGGT	1 cut(s)	414
BsiEI	CGRYCG	1 cut(s)	345
BsiSI	CCGG	3 cut(s)	159, 255, 415
BslFI	GGGAC	1 cut(s)	208
BslI	CCNNNNNNNGG	3 cut(s)	43, 127, 192
BsmFI	GGGAC	1 cut(s)	208
BsnI	GGCC	1 cut(s)	155
Bsp143I	GATC	9 cut(s)	33, 136, 141, 177, 249, 309, 321, 342, 348
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	3 cut(s)	89, 199, 213
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	412
BspFNI	CGCG	2 cut(s)	91, 341
BspLI	GGNNCC	3 cut(s)	87, 196, 197
BspPI	GGATC	3 cut(s)	28, 316, 343
BsrFI	RCCGGY	2 cut(s)	254, 414
BssAI	RCCGGY	2 cut(s)	254, 414
BssECI	CCNNGG	3 cut(s)	18, 27, 264
BssMI	GATC	9 cut(s)	33, 136, 141, 177, 249, 309, 321, 342, 348
BssNI	GRCGYC	1 cut(s)	258
BssT1I	CCWWGG	2 cut(s)	27, 264
Bst2UI	CCWGG	2 cut(s)	128, 187
Bst6I	CTCTTC	2 cut(s)	554, 570
BstACI	GRCGYC	1 cut(s)	258
BstDEI	CTNAG	1 cut(s)	420
BstDSI	CCRYGG	1 cut(s)	27
BstEII	GGTNACC	1 cut(s)	46
BstF5I	GGATG	1 cut(s)	454
BstFNI	CGCG	2 cut(s)	91, 341
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	9 cut(s)	36, 139, 144, 180, 252, 312, 324, 345, 351
BstMBI	GATC	9 cut(s)	33, 136, 141, 177, 249, 309, 321, 342, 348
BstMCI	CGRYCG	1 cut(s)	345
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 207
BstNI	CCWGG	2 cut(s)	128, 187
BstPI	GGTNACC	1 cut(s)	46
BstSCI	CCNGG	3 cut(s)	126, 158, 185
BstSFI	CTRYAG	1 cut(s)	271
BstUI	CGCG	2 cut(s)	91, 341
BstV1I	GCAGC	1 cut(s)	469
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	2 cut(s)	33, 348
BstYI	RGATCY	2 cut(s)	33, 348
BsuRI	GGCC	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	27
BtrI	CACGTC	1 cut(s)	238
BtsCI	GGATG	1 cut(s)	454
CfoI	GCGC	1 cut(s)	212
Cfr10I	RCCGGY	2 cut(s)	254, 414
Cfr13I	GGNCC	2 cut(s)	86, 195
CseI	GACGC	1 cut(s)	247
CspAI	ACCGGT	1 cut(s)	414
CviAII	CATG	2 cut(s)	28, 506
CviJI	RGCY	9 cut(s)	100, 155, 172, 185, 227, 234, 270, 439, 572
CviKI_1	RGCY	9 cut(s)	100, 155, 172, 185, 227, 234, 270, 439, 572
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	9 cut(s)	35, 138, 143, 179, 251, 311, 323, 344, 350
DpnII	GATC	9 cut(s)	33, 136, 141, 177, 249, 309, 321, 342, 348
Eam1104I	CTCTTC	2 cut(s)	554, 570
EarI	CTCTTC	2 cut(s)	554, 570
Eco130I	CCWWGG	2 cut(s)	27, 264
Eco47I	GGWCC	2 cut(s)	86, 195
Eco57I	CTGAAG	2 cut(s)	194, 380
Eco91I	GGTNACC	1 cut(s)	46
EcoO109I	RGGNCCY	1 cut(s)	195
EcoO65I	GGTNACC	1 cut(s)	46
EcoRII	CCWGG	2 cut(s)	126, 185
EcoT14I	CCWWGG	2 cut(s)	27, 264
ErhI	CCWWGG	2 cut(s)	27, 264
FaeI	CATG	2 cut(s)	31, 509
FaiI	YATR	6 cut(s)	29, 53, 279, 491, 507, 549
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	2 cut(s)	27, 505
FauI	CCCGC	1 cut(s)	206
FbaI	TGATCA	2 cut(s)	141, 249
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	2 cut(s)	213, 483
FokI	GGATG	1 cut(s)	461
Fsp4HI	GCNGC	2 cut(s)	213, 483
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	2 cut(s)	213, 483
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	3 cut(s)	159, 255, 415
HgaI	GACGC	1 cut(s)	247
HhaI	GCGC	1 cut(s)	212
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	2 cut(s)	31, 509
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HinfI	GANTC	3 cut(s)	23, 244, 288
HpaII	CCGG	3 cut(s)	159, 255, 415
HphI	GGTGA	6 cut(s)	58, 82, 244, 253, 388, 439
Hpy166II	GTNNAC	2 cut(s)	295, 406
Hpy188I	TCNGA	7 cut(s)	22, 141, 221, 249, 309, 353, 421
Hpy188III	TCNNGA	4 cut(s)	193, 241, 346, 536
Hpy8I	GTNNAC	2 cut(s)	295, 406
Hpy99I	CGWCG	2 cut(s)	44, 242
HpyAV	CCTTC	6 cut(s)	55, 61, 367, 376, 418, 424
HpyCH4IV	ACGT	1 cut(s)	237
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 207
HpyF3I	CTNAG	1 cut(s)	420
HpySE526I	ACGT	1 cut(s)	237
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	2 cut(s)	31, 509
HspAI	GCGC	1 cut(s)	210
KflI	GGGWCCC	1 cut(s)	195
Ksp22I	TGATCA	2 cut(s)	141, 249
Kzo9I	GATC	9 cut(s)	33, 136, 141, 177, 249, 309, 321, 342, 348
Lsp1109I	GCAGC	1 cut(s)	469
LweI	GCATC	1 cut(s)	381
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	46, 259
MalI	GATC	9 cut(s)	35, 138, 143, 179, 251, 311, 323, 344, 350
MboI	GATC	9 cut(s)	33, 136, 141, 177, 249, 309, 321, 342, 348
MboII	GAAGA	7 cut(s)	16, 175, 178, 187, 382, 523, 571
MflI	RGATCY	2 cut(s)	33, 348
MluCI	AATT	1 cut(s)	464
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	8 cut(s)	28, 70, 76, 86, 145, 372, 555, 571
MslI	CAYNNNNRTG	1 cut(s)	56
MspI	CCGG	3 cut(s)	159, 255, 415
MspR9I	CCNGG	3 cut(s)	128, 160, 187
MvaI	CCWGG	2 cut(s)	128, 187
MvnI	CGCG	2 cut(s)	91, 341
MwoI	GCNNNNNNNGC	2 cut(s)	97, 207
NciI	CCSGG	1 cut(s)	160
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	9 cut(s)	33, 136, 141, 177, 249, 309, 321, 342, 348
NlaIII	CATG	2 cut(s)	31, 509
NlaIV	GGNNCC	3 cut(s)	87, 196, 197
NmuCI	GTSAC	2 cut(s)	46, 259
PfeI	GAWTC	2 cut(s)	244, 288
PinAI	ACCGGT	1 cut(s)	414
PkrI	GCNGC	2 cut(s)	214, 484
Ple19I	CGATCG	1 cut(s)	345
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
PpuMI	RGGWCCY	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	195
Psp6I	CCWGG	2 cut(s)	126, 185
PspEI	GGTNACC	1 cut(s)	46
PspGI	CCWGG	2 cut(s)	126, 185
PspN4I	GGNNCC	3 cut(s)	87, 196, 197
PspPI	GGNCC	2 cut(s)	86, 195
PspPPI	RGGWCCY	1 cut(s)	195
PsuI	RGATCY	2 cut(s)	33, 348
PvuI	CGATCG	1 cut(s)	345
RseI	CAYNNNNRTG	1 cut(s)	56
SatI	GCNGC	2 cut(s)	213, 483
Sau3AI	GATC	9 cut(s)	33, 136, 141, 177, 249, 309, 321, 342, 348
Sau96I	GGNCC	2 cut(s)	86, 195
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	3 cut(s)	128, 160, 187
SfaNI	GCATC	1 cut(s)	381
SfcI	CTRYAG	1 cut(s)	271
SgrAI	CRCCGGYG	1 cut(s)	254
SinI	GGWCC	2 cut(s)	86, 195
SmiMI	CAYNNNNRTG	1 cut(s)	56
Sse9I	AATT	1 cut(s)	464
SsiI	CCGC	3 cut(s)	89, 199, 213
StyD4I	CCNGG	3 cut(s)	126, 158, 185
StyI	CCWWGG	2 cut(s)	27, 264
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	6 cut(s)	135, 180, 240, 320, 345, 462
TasI	AATT	1 cut(s)	464
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	2 cut(s)	244, 288
TseFI	GTSAC	2 cut(s)	46, 259
TseI	GCWGC	1 cut(s)	482
Tsp45I	GTSAC	2 cut(s)	46, 259
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	161
VpaK11BI	GGWCC	2 cut(s)	86, 195
XmiI	GTMKAC	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.