Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001380

Physical Location & Seq

Genomic Coordinates Forward (+)

9909423 .. 9909886

Gene Structure 464 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG115500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAGGTTCGTCTACGCTCACTTTCCGATCAACGCCTCCATCCCCAGCTCCAGCAACGCCATCGAGATCCGCAACTTCCTGGGAGTGAAGAAAGTCAGAAAGGTCCAGATGCTCGAAGGCGTGACGATCTCGCGATCGGAGAAGGTGAAGGATGAGATGGTTTTGGACGGGAACGACATCGAGTTGGTTTCGAGGTCGGCGGCGCTGATCAACCAGAAGTGTCATGTGAAGAACAAGGACATCAGGAAGTTTCTGGATGGGATCTACGTCAGCGAGAGGAGCACCATTACCACCGGAGACGAAGGAACAAGAATCGATCGATTAGTCCAGTCAGTATGTACTGATATGGGTCTGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

119

Amino Acids

13.35

Weight (kDa)

8.86

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6	PF00347	21 - 87	1.9e-12	Ribosomal protein L6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33120 AT1G33140 AT4G10450 AT4G10450
fragaria_vesca	FvH4_5g10230 FvH4_7g33110
malus_domestica	MD01G1230300.v1.1 MD07G1302000.v1.1 MD16G1260300.v1.1
prunus_persica	Prupe.2G321000_v2.0.a1 Prupe.5G136400_v2.0.a1
pyrus_communis	pycom01g23830 pycom07g09170 pycom07g27520 pycom12g07060
rosa_chinensis	RchiOBHm_Chr1g0334541 RchiOBHm_Chr1g0334651 RchiOBHm_Chr1g0383161 RchiOBHm_Chr2g0169651 RchiOBHm_Chr3g0462551 RchiOBHm_Chr7g0187991
rosa_laevigata	RLG00000004736 RLG00000026125
rosa_multiflora	Rmu_sc0003624.1_g000019 Rmu_sc0005044.1_g000024 Rmu_sc0008563.1_g000005 Rmu_sc0013280.1_g000007 Rmu_sc0023940.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081920 Rroxscaffold_3G00266830 Rroxscaffold_4G00277530
rosa_rugosa	Rorug01G0126100 Rorug01G0439300
rosa_samantha	Rh1AG139700 Rh1AG464900 Rh1BG422200 Rh1CG131600 Rh1CG435500 Rh1DG143700 Rh1DG153800 Rh1DG454900 Rh3AG115500 Rh3BG118900 Rh3CG122300 Rh7AG091500 Rh7BG093000 Rh7CG092300 Rh7DG093700
rosa_wichuraiana	Rw1G009540 Rw1G009550 Rw2G050900 Rw3G009780 Rw7G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	12
AccII	CGCG	1 cut(s)	133
AciI	CCGC	2 cut(s)	70, 200
AclWI	GGATC	2 cut(s)	61, 269
AfaI	GTAC	1 cut(s)	340
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	1 cut(s)	48
AluI	AGCT	1 cut(s)	48
Alw21I	GWGCWC	1 cut(s)	284
Alw26I	GTCTC	1 cut(s)	291
AlwI	GGATC	2 cut(s)	61, 269
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	103
Bbv12I	GWGCWC	1 cut(s)	284
BccI	CCATC	4 cut(s)	47, 68, 151, 251
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	1 cut(s)	80
BclI	TGATCA	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	291
BfoI	RGCGCY	1 cut(s)	206
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme1390I	CCNGG	1 cut(s)	80
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	103
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	1 cut(s)	99
BpmI	CTGGAG	1 cut(s)	34
Bsa29I	ATCGAT	2 cut(s)	315, 319
BsaJI	CCNNGG	1 cut(s)	79
BsaWI	WCCGGW	1 cut(s)	293
Bse1I	ACTGG	1 cut(s)	328
BseBI	CCWGG	1 cut(s)	80
BseCI	ATCGAT	2 cut(s)	315, 319
BseDI	CCNNGG	1 cut(s)	79
BseGI	GGATG	3 cut(s)	39, 157, 262
BseNI	ACTGG	1 cut(s)	328
BseRI	GAGGAG	1 cut(s)	292
BseYI	CCCAGC	1 cut(s)	44
Bsh1236I	CGCG	1 cut(s)	133
Bsh1285I	CGRYCG	2 cut(s)	137, 319
BshVI	ATCGAT	2 cut(s)	315, 319
BsiEI	CGRYCG	2 cut(s)	137, 319
BsiHKAI	GWGCWC	1 cut(s)	284
BsiSI	CCGG	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	291
BsmBI	CGTCTC	1 cut(s)	291
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	7 cut(s)	27, 66, 126, 134, 207, 261, 316
Bsp68I	TCGCGA	1 cut(s)	133
BspACI	CCGC	2 cut(s)	70, 200
BspDI	ATCGAT	2 cut(s)	315, 319
BspFNI	CGCG	1 cut(s)	133
BspPI	GGATC	2 cut(s)	61, 269
BsrI	ACTGG	1 cut(s)	328
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	7 cut(s)	27, 66, 126, 134, 207, 261, 316
Bst2UI	CCWGG	1 cut(s)	80
BstF5I	GGATG	3 cut(s)	39, 157, 262
BstFNI	CGCG	1 cut(s)	133
BstH2I	RGCGCY	1 cut(s)	206
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	7 cut(s)	30, 69, 129, 137, 210, 264, 319
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	7 cut(s)	27, 66, 126, 134, 207, 261, 316
BstMCI	CGRYCG	2 cut(s)	137, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	279
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	78
BstUI	CGCG	1 cut(s)	133
BstX2I	RGATCY	2 cut(s)	66, 261
BstYI	RGATCY	2 cut(s)	66, 261
Bsu15I	ATCGAT	2 cut(s)	315, 319
BsuTUI	ATCGAT	2 cut(s)	315, 319
BtsCI	GGATG	3 cut(s)	39, 157, 262
BtuMI	TCGCGA	1 cut(s)	133
CfoI	GCGC	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	103
ClaI	ATCGAT	2 cut(s)	315, 319
Csp6I	GTAC	1 cut(s)	339
CviAII	CATG	1 cut(s)	224
CviJI	RGCY	1 cut(s)	48
CviKI_1	RGCY	1 cut(s)	48
CviQI	GTAC	1 cut(s)	339
DpnI	GATC	7 cut(s)	29, 68, 128, 136, 209, 263, 318
DpnII	GATC	7 cut(s)	27, 66, 126, 134, 207, 261, 316
Eco47I	GGWCC	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	78
Esp3I	CGTCTC	1 cut(s)	291
FaeI	CATG	1 cut(s)	227
FaiI	YATR	3 cut(s)	225, 337, 347
FatI	CATG	1 cut(s)	223
FbaI	TGATCA	1 cut(s)	207
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	3 cut(s)	26, 164, 269
Fsp4HI	GCNGC	1 cut(s)	201
GlaI	GCGC	1 cut(s)	204
GluI	GCNGC	1 cut(s)	201
GsaI	CCCAGC	1 cut(s)	48
GsuI	CTGGAG	1 cut(s)	34
HaeII	RGCGCY	1 cut(s)	206
HapII	CCGG	1 cut(s)	294
HhaI	GCGC	1 cut(s)	205
Hin1II	CATG	1 cut(s)	227
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HinfI	GANTC	1 cut(s)	312
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	3 cut(s)	27, 98, 139
Hpy188III	TCNNGA	5 cut(s)	64, 106, 132, 244, 254
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	4 cut(s)	110, 136, 142, 296
HpyCH4IV	ACGT	1 cut(s)	267
HpyF10VI	GCNNNNNNNGC	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	1 cut(s)	227
HspAI	GCGC	1 cut(s)	203
Ksp22I	TGATCA	1 cut(s)	207
Kzo9I	GATC	7 cut(s)	27, 66, 126, 134, 207, 261, 316
LmnI	GCTCC	2 cut(s)	53, 279
LweI	GCATC	1 cut(s)	99
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	7 cut(s)	29, 68, 128, 136, 209, 263, 318
MboI	GATC	7 cut(s)	27, 66, 126, 134, 207, 261, 316
MboII	GAAGA	2 cut(s)	100, 241
MflI	RGATCY	2 cut(s)	66, 261
MhlI	GDGCHC	1 cut(s)	284
MnlI	CCTC	3 cut(s)	46, 186, 270
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
MvnI	CGCG	1 cut(s)	133
MwoI	GCNNNNNNNGC	1 cut(s)	279
NdeII	GATC	7 cut(s)	27, 66, 126, 134, 207, 261, 316
NlaIII	CATG	1 cut(s)	227
NmuCI	GTSAC	1 cut(s)	121
NruI	TCGCGA	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	312
PkrI	GCNGC	1 cut(s)	202
Ple19I	CGATCG	2 cut(s)	137, 319
Psp6I	CCWGG	1 cut(s)	78
PspFI	CCCAGC	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	103
PsuI	RGATCY	2 cut(s)	66, 261
PvuI	CGATCG	2 cut(s)	137, 319
RruI	TCGCGA	1 cut(s)	133
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	7 cut(s)	27, 66, 126, 134, 207, 261, 316
Sau96I	GGNCC	1 cut(s)	103
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	284
SetI	ASST	6 cut(s)	8, 50, 105, 147, 197, 270
SfaNI	GCATC	1 cut(s)	99
SinI	GGWCC	1 cut(s)	103
SsiI	CCGC	2 cut(s)	70, 200
StyD4I	CCNGG	1 cut(s)	78
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	6 cut(s)	63, 114, 180, 191, 315, 319
TatI	WGTACW	1 cut(s)	338
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	1 cut(s)	312
TseFI	GTSAC	1 cut(s)	121
Tsp45I	GTSAC	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	103
XmiI	GTMKAC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.