Rw2G050900

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001380
Physical Location & Seq
Forward (+)
78613707 .. 78615486
1780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G050900.1

Sequence Viewer

Length: 633 bp
ATGAAGACGATTTTGGCCTCGAAGGTCATGGGATATCCTGGATGGCGTCACCATCAAGGTGAAGGCAAAGGTCATCGAAGTCGAAGGTCCCTGCGGGAAGCTCACCTCAACTTCAAGCTAGTCACCGATGACTCCACCGGTGAGAAGAAGCTCAAGATCGAGGCCTGGTTCAGCACCAGCAAGACTAGTGCCCCCATCTGCACCTCCCTCAGCCACGTCAGCAACCTCATCACCGACATCACCAAGGGCTACCGCTATGAGATAAGCAGGGCCGGACCTGACACGAGGCCCAAAAAAATTTTTTATCGCTTTTTATTATGTCCAAATGCCCGATCGGAAAAGGTGAAGGATGAGCTGGTTTTGGACGGGAATGACATCGAGTTGGTTTCAAGGTCGGCGAAGAAGGACATCAAGAAGTTTCTGAATGGGATCTACGTCAGCGAGAGAAGCACCATTGCCATCGAGATGAATGAAGAAGGATCGATTAGTCCAGTCAGTAGTACTATTTTCTGGACAATTCTTAGGTTCACCCCTAGGGTGAACGAACATATTCACTCCCATTGTCGATTAACGTACATACTTTTACTTAATAAATTCATAATCGAACGATCTATATCTTATATTAGCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L6

Protein Analysis

210

Amino Acids

24.07

Weight (kDa)

9.71

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 94, 253
AclWI GGATC 2 cut(s) 437, 487
AcsI RAATTY 2 cut(s) 297, 593
AcyI GRCGYC 1 cut(s) 46
AfaI GTAC 2 cut(s) 502, 575
AgeI ACCGGT 1 cut(s) 137
AgsI TTSAA 2 cut(s) 115, 390
AhlI ACTAGT 1 cut(s) 185
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 2 cut(s) 37, 164
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AluBI AGCT 4 cut(s) 101, 118, 151, 355
AluI AGCT 4 cut(s) 101, 118, 151, 355
AlwI GGATC 2 cut(s) 437, 487
AoxI GGCC 4 cut(s) 15, 162, 270, 287
ApoI RAATTY 2 cut(s) 297, 593
AsiGI ACCGGT 1 cut(s) 137
Asp700I GAANNNNTTC 1 cut(s) 549
AspA2I CCTAGG 1 cut(s) 533
AspS9I GGNCC 4 cut(s) 87, 270, 275, 288
AvaII GGWCC 2 cut(s) 87, 275
AvrII CCTAGG 1 cut(s) 533
BaeGI GKGCMC 1 cut(s) 193
BauI CACGAG 1 cut(s) 283
BbsI GAAGAC 1 cut(s) 11
BbvCI CCTCAGC 1 cut(s) 209
BccI CCATC 4 cut(s) 36, 60, 203, 467
BciT130I CCWGG 2 cut(s) 39, 166
BcuI ACTAGT 1 cut(s) 185
BfaI CTAG 3 cut(s) 119, 186, 534
BlnI CCTAGG 1 cut(s) 533
BmcAI AGTACT 1 cut(s) 502
Bme1390I CCNGG 2 cut(s) 39, 166
Bme18I GGWCC 2 cut(s) 87, 275
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 4 cut(s) 87, 270, 275, 288
BmiI GGNNCC 1 cut(s) 89
BmrFI CCNGG 2 cut(s) 39, 166
BpiI GAAGAC 1 cut(s) 11
Bpu10I CCTNAGC 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 137
Bsa29I ATCGAT 1 cut(s) 482
BsaBI GATNNNNATC 1 cut(s) 613
BsaHI GRCGYC 1 cut(s) 46
BsaJI CCNNGG 2 cut(s) 243, 533
BsaWI WCCGGW 1 cut(s) 137
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 491
Bse3DI GCAATG 1 cut(s) 453
Bse8I GATNNNNATC 1 cut(s) 613
BseBI CCWGG 2 cut(s) 39, 166
BseCI ATCGAT 1 cut(s) 482
BseDI CCNNGG 2 cut(s) 243, 533
BseGI GGATG 2 cut(s) 47, 355
BseJI GATNNNNATC 1 cut(s) 613
BseMI GCAATG 1 cut(s) 453
BseMII CTCAG 1 cut(s) 223
BseNI ACTGG 1 cut(s) 491
BseSI GKGCMC 1 cut(s) 193
BsgI GTGCAG 1 cut(s) 184
Bsh1285I CGRYCG 1 cut(s) 335
BshFI GGCC 4 cut(s) 17, 164, 272, 289
BshTI ACCGGT 1 cut(s) 137
BshVI ATCGAT 1 cut(s) 482
BsiEI CGRYCG 1 cut(s) 335
BsiSI CCGG 2 cut(s) 138, 273
BslFI GGGAC 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 73
BsnI GGCC 4 cut(s) 17, 164, 272, 289
Bsp1286I GDGCHC 1 cut(s) 193
Bsp143I GATC 5 cut(s) 156, 332, 429, 479, 608
BspACI CCGC 2 cut(s) 94, 253
BspANI GGCC 4 cut(s) 17, 164, 272, 289
BspCNI CTCAG 1 cut(s) 222
BspDI ATCGAT 1 cut(s) 482
BspLI GGNNCC 1 cut(s) 89
BspPI GGATC 2 cut(s) 437, 487
BsrDI GCAATG 1 cut(s) 453
BsrFI RCCGGY 1 cut(s) 137
BsrI ACTGG 1 cut(s) 491
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 2 cut(s) 243, 533
BssMI GATC 5 cut(s) 156, 332, 429, 479, 608
BssNI GRCGYC 1 cut(s) 46
BssSI CACGAG 1 cut(s) 283
BssT1I CCWWGG 2 cut(s) 243, 533
Bst2BI CACGAG 1 cut(s) 283
Bst2UI CCWGG 2 cut(s) 39, 166
BstACI GRCGYC 1 cut(s) 46
BstDEI CTNAG 2 cut(s) 209, 521
BstF5I GGATG 2 cut(s) 47, 355
BstKTI GATC 5 cut(s) 159, 335, 432, 482, 611
BstMBI GATC 5 cut(s) 156, 332, 429, 479, 608
BstMCI CGRYCG 1 cut(s) 335
BstMWI GCNNNNNNNGC 2 cut(s) 219, 447
BstNI CCWGG 2 cut(s) 39, 166
BstSCI CCNGG 2 cut(s) 37, 164
BstSLI GKGCMC 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 429
BstYI RGATCY 1 cut(s) 429
Bsu15I ATCGAT 1 cut(s) 482
BsuRI GGCC 4 cut(s) 17, 164, 272, 289
BsuTUI ATCGAT 1 cut(s) 482
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 2 cut(s) 47, 355
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 4 cut(s) 87, 270, 275, 288
ClaI ATCGAT 1 cut(s) 482
CseI GACGC 1 cut(s) 35
Csp6I GTAC 2 cut(s) 501, 574
CspAI ACCGGT 1 cut(s) 137
CviAII CATG 1 cut(s) 28
CviQI GTAC 2 cut(s) 501, 574
DdeI CTNAG 2 cut(s) 209, 521
DpnI GATC 5 cut(s) 158, 334, 431, 481, 610
DpnII GATC 5 cut(s) 156, 332, 429, 479, 608
Eco130I CCWWGG 2 cut(s) 243, 533
Eco147I AGGCCT 1 cut(s) 164
Eco32I GATATC 1 cut(s) 35
Eco47I GGWCC 2 cut(s) 87, 275
EcoO109I RGGNCCY 1 cut(s) 87
EcoRII CCWGG 2 cut(s) 37, 164
EcoRV GATATC 1 cut(s) 35
EcoT14I CCWWGG 2 cut(s) 243, 533
ErhI CCWWGG 2 cut(s) 243, 533
FaeI CATG 1 cut(s) 31
FaiI YATR 8 cut(s) 29, 258, 319, 549, 578, 599, 614, 621
FaqI GGGAC 1 cut(s) 73
FatI CATG 1 cut(s) 27
FauI CCCGC 1 cut(s) 87
FokI GGATG 2 cut(s) 54, 362
FspBI CTAG 3 cut(s) 119, 186, 534
HaeIII GGCC 4 cut(s) 17, 164, 272, 289
HapII CCGG 2 cut(s) 138, 273
HgaI GACGC 1 cut(s) 35
Hin1I GRCGYC 1 cut(s) 46
Hin1II CATG 1 cut(s) 31
HinfI GANTC 1 cut(s) 131
HpaII CCGG 2 cut(s) 138, 273
Hpy166II GTNNAC 2 cut(s) 528, 541
Hpy188I TCNGA 2 cut(s) 337, 423
Hpy188III TCNNGA 4 cut(s) 154, 412, 463, 511
Hpy8I GTNNAC 2 cut(s) 528, 541
HpyAV CCTTC 6 cut(s) 16, 56, 78, 340, 397, 470
HpyCH4IV ACGT 3 cut(s) 216, 435, 572
HpyCH4V TGCA 1 cut(s) 201
HpyF10VI GCNNNNNNNGC 2 cut(s) 219, 447
HpyF3I CTNAG 2 cut(s) 209, 521
HpySE526I ACGT 3 cut(s) 216, 435, 572
Hsp92I GRCGYC 1 cut(s) 46
Hsp92II CATG 1 cut(s) 31
Kzo9I GATC 5 cut(s) 156, 332, 429, 479, 608
MaeI CTAG 3 cut(s) 119, 186, 534
MaeII ACGT 3 cut(s) 216, 435, 572
MaeIII GTNAC 2 cut(s) 47, 121
MalI GATC 5 cut(s) 158, 334, 431, 481, 610
MboI GATC 5 cut(s) 156, 332, 429, 479, 608
MboII GAAGA 4 cut(s) 16, 157, 412, 485
MflI RGATCY 1 cut(s) 429
MhlI GDGCHC 1 cut(s) 193
MluCI AATT 3 cut(s) 297, 516, 593
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 7 cut(s) 28, 116, 154, 214, 218, 236, 279
MroXI GAANNNNTTC 1 cut(s) 549
MseI TTAA 3 cut(s) 569, 588, 631
MslI CAYNNNNRTG 2 cut(s) 57, 464
MspI CCGG 2 cut(s) 138, 273
MspR9I CCNGG 2 cut(s) 39, 166
MvaI CCWGG 2 cut(s) 39, 166
MwoI GCNNNNNNNGC 2 cut(s) 219, 447
NdeII GATC 5 cut(s) 156, 332, 429, 479, 608
NlaIII CATG 1 cut(s) 31
NlaIV GGNNCC 1 cut(s) 89
NmuCI GTSAC 2 cut(s) 47, 121
PceI AGGCCT 1 cut(s) 164
PdmI GAANNNNTTC 1 cut(s) 549
PfoI TCCNGGA 1 cut(s) 37
PinAI ACCGGT 1 cut(s) 137
Ple19I CGATCG 1 cut(s) 335
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PpuMI RGGWCCY 1 cut(s) 87
Psp5II RGGWCCY 1 cut(s) 87
Psp6I CCWGG 2 cut(s) 37, 164
PspGI CCWGG 2 cut(s) 37, 164
PspN4I GGNNCC 1 cut(s) 89
PspPI GGNCC 4 cut(s) 87, 270, 275, 288
PspPPI RGGWCCY 1 cut(s) 87
PsuI RGATCY 1 cut(s) 429
PvuI CGATCG 1 cut(s) 335
RsaI GTAC 2 cut(s) 502, 575
RsaNI GTAC 2 cut(s) 501, 574
RseI CAYNNNNRTG 2 cut(s) 57, 464
SaqAI TTAA 3 cut(s) 569, 588, 631
Sau3AI GATC 5 cut(s) 156, 332, 429, 479, 608
Sau96I GGNCC 4 cut(s) 87, 270, 275, 288
ScaI AGTACT 1 cut(s) 502
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 2 cut(s) 39, 166
SduI GDGCHC 1 cut(s) 193
SgrAI CRCCGGYG 1 cut(s) 137
SinI GGWCC 2 cut(s) 87, 275
SmiMI CAYNNNNRTG 2 cut(s) 57, 464
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
SpeI ACTAGT 1 cut(s) 185
Sse9I AATT 3 cut(s) 297, 516, 593
SseBI AGGCCT 1 cut(s) 164
SsiI CCGC 2 cut(s) 94, 253
SspMI CTAG 3 cut(s) 119, 186, 534
StuI AGGCCT 1 cut(s) 164
StyD4I CCNGG 2 cut(s) 37, 164
StyI CCWWGG 2 cut(s) 243, 533
TaiI ACGT 3 cut(s) 219, 438, 575
TaqI TCGA 9 cut(s) 20, 76, 82, 159, 378, 462, 482, 565, 603
TasI AATT 3 cut(s) 297, 516, 593
TatI WGTACW 1 cut(s) 500
Tru1I TTAA 3 cut(s) 569, 588, 631
Tru9I TTAA 3 cut(s) 569, 588, 631
TseFI GTSAC 2 cut(s) 47, 121
Tsp45I GTSAC 2 cut(s) 47, 121
TspDTI ATGAA 4 cut(s) 17, 482, 486, 586
VpaK11BI GGWCC 2 cut(s) 87, 275
XapI RAATTY 2 cut(s) 297, 593
XmaJI CCTAGG 1 cut(s) 533
XmnI GAANNNNTTC 1 cut(s) 549
XspI CTAG 3 cut(s) 119, 186, 534
ZrmI AGTACT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.