Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001380

Physical Location & Seq

Genomic Coordinates Forward (+)

83851220 .. 83851507

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53722

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGCCGAAACAGTTCAAAATGAAGACGATTTTGGCCTCGAAGGTCATGGGATATCCTAGATGGCGTCACCATCAAGGTGAAGGCAAAGGTCATCGAGGTCGAAGGTCCCTGCGGGAAGCTCACCTCAACTTCAAGCTAGTCACCGATGACTCCACCGGTGAGAAGAAGCTCAAGATCGAGGCCTGGTTCAACACCAGCAAGACTAGTGCCCCCATCTGCACCTCCCTCAGCCACGTTAGCAACCTCATCACCGACGTCACCAAGGGCTACCGCTATGAGATAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

95

Amino Acids

10.93

Weight (kDa)

10.12

Isoelectric Point (pI)

33.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33120 AT1G33140 AT4G10450 AT4G10450
fragaria_vesca	FvH4_5g10230 FvH4_7g33110
malus_domestica	MD01G1230300.v1.1 MD07G1302000.v1.1 MD16G1260300.v1.1
prunus_persica	Prupe.2G321000_v2.0.a1 Prupe.5G136400_v2.0.a1
pyrus_communis	pycom01g23830 pycom07g09170 pycom07g27520 pycom12g07060
rosa_chinensis	RchiOBHm_Chr1g0334541 RchiOBHm_Chr1g0334651 RchiOBHm_Chr1g0383161 RchiOBHm_Chr2g0169651 RchiOBHm_Chr3g0462551 RchiOBHm_Chr7g0187991
rosa_laevigata	RLG00000004736 RLG00000026125
rosa_multiflora	Rmu_sc0003624.1_g000019 Rmu_sc0005044.1_g000024 Rmu_sc0008563.1_g000005 Rmu_sc0013280.1_g000007 Rmu_sc0023940.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081920 Rroxscaffold_3G00266830 Rroxscaffold_4G00277530
rosa_rugosa	Rorug01G0126100 Rorug01G0439300
rosa_samantha	Rh1AG139700 Rh1AG464900 Rh1BG422200 Rh1CG131600 Rh1CG435500 Rh1DG143700 Rh1DG153800 Rh1DG454900 Rh3AG115500 Rh3BG118900 Rh3CG122300 Rh7AG091500 Rh7BG093000 Rh7CG092300 Rh7DG093700
rosa_wichuraiana	Rw1G009540 Rw1G009550 Rw2G050900 Rw3G009780 Rw7G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	258
AciI	CCGC	2 cut(s)	112, 271
AcyI	GRCGYC	2 cut(s)	64, 255
AgeI	ACCGGT	1 cut(s)	155
AgsI	TTSAA	3 cut(s)	16, 133, 190
AhlI	ACTAGT	1 cut(s)	203
AjnI	CCWGG	1 cut(s)	182
AjuI	GAANNNNNNNTTGG	2 cut(s)	14, 46
AluBI	AGCT	3 cut(s)	119, 136, 169
AluI	AGCT	3 cut(s)	119, 136, 169
AoxI	GGCC	2 cut(s)	33, 180
AsiGI	ACCGGT	1 cut(s)	155
Asp700I	GAANNNNTTC	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	105
AsuHPI	GGTGA	7 cut(s)	59, 89, 113, 133, 170, 241, 250
AvaII	GGWCC	1 cut(s)	105
BaeGI	GKGCMC	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	29
BbvCI	CCTCAGC	1 cut(s)	227
BccI	CCATC	3 cut(s)	54, 78, 221
BciT130I	CCWGG	1 cut(s)	184
BcuI	ACTAGT	1 cut(s)	203
BfaI	CTAG	3 cut(s)	57, 137, 204
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	184
BpiI	GAAGAC	1 cut(s)	29
Bpu10I	CCTNAGC	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	155
BsaHI	GRCGYC	2 cut(s)	64, 255
BsaJI	CCNNGG	1 cut(s)	261
BsaWI	WCCGGW	1 cut(s)	155
Bse118I	RCCGGY	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	184
BseDI	CCNNGG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	241
BseSI	GKGCMC	1 cut(s)	211
BsgI	GTGCAG	1 cut(s)	202
BshFI	GGCC	2 cut(s)	35, 182
BshTI	ACCGGT	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	91
BsnI	GGCC	2 cut(s)	35, 182
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	1 cut(s)	174
BspACI	CCGC	2 cut(s)	112, 271
BspANI	GGCC	2 cut(s)	35, 182
BspCNI	CTCAG	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	1 cut(s)	174
BssNI	GRCGYC	2 cut(s)	64, 255
BssT1I	CCWWGG	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	184
Bst4CI	ACNGT	1 cut(s)	12
BstACI	GRCGYC	2 cut(s)	64, 255
BstDEI	CTNAG	2 cut(s)	227, 285
BstKTI	GATC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstNI	CCWGG	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	182
BstSLI	GKGCMC	1 cut(s)	211
BstV2I	GAAGAC	1 cut(s)	29
BsuRI	GGCC	2 cut(s)	35, 182
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	105
CseI	GACGC	1 cut(s)	53
CspAI	ACCGGT	1 cut(s)	155
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	7 cut(s)	35, 119, 136, 169, 182, 231, 267
CviKI_1	RGCY	7 cut(s)	35, 119, 136, 169, 182, 231, 267
DdeI	CTNAG	2 cut(s)	227, 285
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	261
Eco147I	AGGCCT	1 cut(s)	182
Eco32I	GATATC	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	105
EcoO109I	RGGNCCY	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	182
EcoRV	GATATC	1 cut(s)	53
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	1 cut(s)	49
FaiI	YATR	2 cut(s)	47, 276
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	1 cut(s)	45
FauI	CCCGC	1 cut(s)	105
FspBI	CTAG	3 cut(s)	57, 137, 204
HaeIII	GGCC	2 cut(s)	35, 182
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	1 cut(s)	53
Hin1I	GRCGYC	2 cut(s)	64, 255
Hin1II	CATG	1 cut(s)	49
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	7 cut(s)	59, 89, 113, 133, 170, 241, 250
Hpy188III	TCNNGA	1 cut(s)	172
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	3 cut(s)	34, 74, 96
HpyCH4III	ACNGT	1 cut(s)	12
HpyCH4IV	ACGT	2 cut(s)	234, 255
HpyCH4V	TGCA	1 cut(s)	219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
HpyF3I	CTNAG	2 cut(s)	227, 285
HpySE526I	ACGT	2 cut(s)	234, 255
Hsp92I	GRCGYC	2 cut(s)	64, 255
Hsp92II	CATG	1 cut(s)	49
Kzo9I	GATC	1 cut(s)	174
LpnPI	CCDG	5 cut(s)	122, 169, 169, 196, 208
MaeI	CTAG	3 cut(s)	57, 137, 204
MaeII	ACGT	2 cut(s)	234, 255
MaeIII	GTNAC	3 cut(s)	65, 139, 256
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	2 cut(s)	34, 175
MhlI	GDGCHC	1 cut(s)	211
MlyI	GAGTC	1 cut(s)	143
MnlI	CCTC	7 cut(s)	46, 89, 134, 172, 232, 236, 254
MroXI	GAANNNNTTC	1 cut(s)	11
MslI	CAYNNNNRTG	1 cut(s)	75
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	184
MwoI	GCNNNNNNNGC	1 cut(s)	237
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	1 cut(s)	107
NmuCI	GTSAC	3 cut(s)	65, 139, 256
PceI	AGGCCT	1 cut(s)	182
PdmI	GAANNNNTTC	1 cut(s)	11
PinAI	ACCGGT	1 cut(s)	155
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PpuMI	RGGWCCY	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	107
PspPI	GGNCC	1 cut(s)	105
PspPPI	RGGWCCY	1 cut(s)	105
RseI	CAYNNNNRTG	1 cut(s)	75
Sau3AI	GATC	1 cut(s)	174
Sau96I	GGNCC	1 cut(s)	105
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	184
SduI	GDGCHC	1 cut(s)	211
SgrAI	CRCCGGYG	1 cut(s)	155
SinI	GGWCC	1 cut(s)	105
SmiMI	CAYNNNNRTG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SpeI	ACTAGT	1 cut(s)	203
SseBI	AGGCCT	1 cut(s)	182
SsiI	CCGC	2 cut(s)	112, 271
SspMI	CTAG	3 cut(s)	57, 137, 204
StuI	AGGCCT	1 cut(s)	182
StyD4I	CCNGG	1 cut(s)	182
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	12
TaiI	ACGT	2 cut(s)	237, 258
TaqI	TCGA	4 cut(s)	38, 94, 100, 177
TseFI	GTSAC	3 cut(s)	65, 139, 256
Tsp45I	GTSAC	3 cut(s)	65, 139, 256
TspDTI	ATGAA	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	105
XmnI	GAANNNNTTC	1 cut(s)	11
XspI	CTAG	3 cut(s)	57, 137, 204
ZraI	GACGTC	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.