Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001380

Physical Location & Seq

Genomic Coordinates Forward (+)

66100711 .. 66105572

Gene Structure 4862 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG454900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAGGTTCGTGTACGCTCATTTTCCCATCAACGCTTCGATCACTAATGGAGCCAAGTCGATTGAGATCAGGAACTTTCTCGGTGAGAAGAAGGTGAGAAAGGTGGATATGCTTGATGGTGTTTCTATCCTCCGATCTGAGAAGGTGAAGGATGAGCTGATATTGGATGGCAATGATATTGAACTTGTTTCTCGGTCTTGTGCTCTGATCAACCAGAAATGCCTGTCAAGAACAAGGATATCAGGAAGTTTCTTGATGGTATCTATGTTAGCGAGAGGGCAACCATCAATACCGAGGAATGAAGGCTGTATTTTTCTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009955 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048856 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

107

Amino Acids

12.0

Weight (kDa)

9.45

Isoelectric Point (pI)

37.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6	PF00347	18 - 73	2.1e-07	Ribosomal protein L6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33120 AT1G33140 AT4G10450 AT4G10450
fragaria_vesca	FvH4_5g10230 FvH4_7g33110
malus_domestica	MD01G1230300.v1.1 MD07G1302000.v1.1 MD16G1260300.v1.1
prunus_persica	Prupe.2G321000_v2.0.a1 Prupe.5G136400_v2.0.a1
pyrus_communis	pycom01g23830 pycom07g09170 pycom07g27520 pycom12g07060
rosa_chinensis	RchiOBHm_Chr1g0334541 RchiOBHm_Chr1g0334651 RchiOBHm_Chr1g0383161 RchiOBHm_Chr2g0169651 RchiOBHm_Chr3g0462551 RchiOBHm_Chr7g0187991
rosa_laevigata	RLG00000004736 RLG00000026125
rosa_multiflora	Rmu_sc0003624.1_g000019 Rmu_sc0005044.1_g000024 Rmu_sc0008563.1_g000005 Rmu_sc0013280.1_g000007 Rmu_sc0023940.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081920 Rroxscaffold_3G00266830 Rroxscaffold_4G00277530
rosa_rugosa	Rorug01G0126100 Rorug01G0439300
rosa_samantha	Rh1AG139700 Rh1AG464900 Rh1BG422200 Rh1CG131600 Rh1CG435500 Rh1DG143700 Rh1DG153800 Rh1DG454900 Rh3AG115500 Rh3BG118900 Rh3CG122300 Rh7AG091500 Rh7BG093000 Rh7CG092300 Rh7DG093700
rosa_wichuraiana	Rw1G009540 Rw1G009550 Rw2G050900 Rw3G009780 Rw7G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	14
AgsI	TTSAA	1 cut(s)	182
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
Alw21I	GWGCWC	1 cut(s)	205
AsuHPI	GGTGA	3 cut(s)	95, 106, 157
Bbv12I	GWGCWC	1 cut(s)	205
BccI	CCATC	5 cut(s)	35, 110, 161, 250, 292
BclI	TGATCA	1 cut(s)	207
BmiI	GGNNCC	1 cut(s)	52
BsaBI	GATNNNNATC	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	293
Bse3DI	GCAATG	1 cut(s)	178
Bse8I	GATNNNNATC	1 cut(s)	65
BseDI	CCNNGG	1 cut(s)	293
BseGI	GGATG	2 cut(s)	157, 172
BseJI	GATNNNNATC	1 cut(s)	65
BseMI	GCAATG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	4 cut(s)	39, 66, 134, 207
BspCNI	CTCAG	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	178
BssECI	CCNNGG	1 cut(s)	293
BssMI	GATC	4 cut(s)	39, 66, 134, 207
BstDEI	CTNAG	1 cut(s)	138
BstF5I	GGATG	2 cut(s)	157, 172
BstKTI	GATC	4 cut(s)	42, 69, 137, 210
BstMBI	GATC	4 cut(s)	39, 66, 134, 207
BtsCI	GGATG	2 cut(s)	157, 172
Csp6I	GTAC	1 cut(s)	13
CviJI	RGCY	3 cut(s)	53, 157, 306
CviKI_1	RGCY	3 cut(s)	53, 157, 306
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	4 cut(s)	41, 68, 136, 209
DpnII	GATC	4 cut(s)	39, 66, 134, 207
Eco32I	GATATC	1 cut(s)	240
EcoRV	GATATC	1 cut(s)	240
FaiI	YATR	3 cut(s)	110, 266, 320
FbaI	TGATCA	1 cut(s)	207
FokI	GGATG	2 cut(s)	164, 179
HphI	GGTGA	3 cut(s)	95, 106, 157
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	3 cut(s)	134, 139, 207
Hpy188III	TCNNGA	4 cut(s)	70, 228, 243, 253
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	4 cut(s)	85, 136, 142, 296
HpyF3I	CTNAG	1 cut(s)	138
Ksp22I	TGATCA	1 cut(s)	207
Kzo9I	GATC	4 cut(s)	39, 66, 134, 207
LmnI	GCTCC	1 cut(s)	50
LpnPI	CCDG	4 cut(s)	55, 227, 228, 236
MalI	GATC	4 cut(s)	41, 68, 136, 209
MboI	GATC	4 cut(s)	39, 66, 134, 207
MboII	GAAGA	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	205
MnlI	CCTC	3 cut(s)	140, 269, 288
NdeII	GATC	4 cut(s)	39, 66, 134, 207
NlaIV	GGNNCC	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	52
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
Sau3AI	GATC	4 cut(s)	39, 66, 134, 207
SduI	GDGCHC	1 cut(s)	205
SetI	ASST	5 cut(s)	8, 96, 105, 147, 159
TaqI	TCGA	2 cut(s)	38, 59
TaqII	GACCGA	1 cut(s)	183
TspDTI	ATGAA	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.