AT4G10450

60s ribosomal protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
6462918 .. 6464558
1641 bp
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UTR
Exon/CDS
Intron
AT4G10450.1

Sequence Viewer

Length: 585 bp
ATGAAGACCATTTTGTCCTCGGAGACTATGGACATCCCCGACGGCGTCGCCATTAAGGTAAACGCCAAGGTGATTGAGGTCGAAGGTCCACGAGGTAAACTCACTCGTGACTTCAAGCATCTGAATCTCGATTTCCAGTTGATTAAAGACCAAGTCACTGGAAAACGTCAGCTTAAGATTGATTCTTGGTTTGGTTCTCGTAAGACAAGTGCTTCGATTAGAACTGCTTTAAGCCATGTTGATAATCTCATTGCTGGTGTTACTCAAGGTTTTCTTTATAGAATGAGATTTGTGTATGCTCATTTTCCTATCAATGCTTCTATTGATGGTAACAATAAGAGTATTGAGATTCGTAACTTCCTTGGTGAGAAGAAGGTGAGGAAGGTTGAGATGTTGGATGGTGTTAAGATTGTTCGATCTGAGAAGGTTAAGGATGAGATTATTCTTGAGGGAAATGATATTGAGCTTGTTTCACGGTCTTGTGCTTTGATCAATCAGAAATGTCATGTGAAGAAGAAGGATATCAGGAAGTTTCTTGATGGTATCTATGTGAGCGAGAAAGGCAAGATCGCAGTCGAGGAATGA

Protein Analysis

194

Amino Acids

21.97

Weight (kDa)

9.52

Isoelectric Point (pI)

24.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L6 PF00347 12 - 90 2.3e-08 Ribosomal protein L6
Ribosomal_L6 PF00347 102 - 181 2.7e-14 Ribosomal protein L6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 13
AcyI GRCGYC 1 cut(s) 45
AflII CTTAAG 1 cut(s) 173
AgsI TTSAA 1 cut(s) 115
AluBI AGCT 2 cut(s) 172, 466
AluI AGCT 2 cut(s) 172, 466
Alw26I GTCTC 1 cut(s) 17
ArsI GACNNNNNNTTYG 2 cut(s) 196, 228
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 3 cut(s) 82, 377, 388
AvaII GGWCC 1 cut(s) 86
BauI CACGAG 2 cut(s) 90, 105
BbsI GAAGAC 1 cut(s) 11
BccI CCATC 3 cut(s) 320, 392, 533
BceAI ACGGC 1 cut(s) 58
BclI TGATCA 1 cut(s) 489
BcoDI GTCTC 1 cut(s) 17
BfrI CTTAAG 1 cut(s) 173
Bme18I GGWCC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 86
BmsI GCATC 1 cut(s) 127
BpiI GAAGAC 1 cut(s) 11
BplI GAGNNNNNCTC 2 cut(s) 84, 116
BpuEI CTTGAG 2 cut(s) 249, 467
BsaHI GRCGYC 1 cut(s) 45
BsaJI CCNNGG 3 cut(s) 18, 66, 361
Bse1I ACTGG 2 cut(s) 136, 163
Bse3DI GCAATG 1 cut(s) 249
BseDI CCNNGG 3 cut(s) 18, 66, 361
BseGI GGATG 3 cut(s) 33, 403, 439
BseMI GCAATG 1 cut(s) 249
BseMII CTCAG 1 cut(s) 411
BseNI ACTGG 2 cut(s) 136, 163
BsmAI GTCTC 1 cut(s) 17
Bsp143I GATC 3 cut(s) 416, 489, 567
BspCNI CTCAG 1 cut(s) 412
BspTI CTTAAG 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 249
BsrI ACTGG 2 cut(s) 136, 163
BssECI CCNNGG 3 cut(s) 18, 66, 361
BssMI GATC 3 cut(s) 416, 489, 567
BssNI GRCGYC 1 cut(s) 45
BssSI CACGAG 2 cut(s) 90, 105
BssT1I CCWWGG 2 cut(s) 66, 361
Bst2BI CACGAG 2 cut(s) 90, 105
Bst4CI ACNGT 1 cut(s) 477
BstACI GRCGYC 1 cut(s) 45
BstAFI CTTAAG 1 cut(s) 173
BstDEI CTNAG 1 cut(s) 420
BstF5I GGATG 3 cut(s) 33, 403, 439
BstKTI GATC 3 cut(s) 419, 492, 570
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 3 cut(s) 416, 489, 567
BstMWI GCNNNNNNNGC 1 cut(s) 561
BstV2I GAAGAC 1 cut(s) 11
BstXI CCANNNNNNTGG 1 cut(s) 158
BtsCI GGATG 3 cut(s) 33, 403, 439
BtsIMutI CAGTG 1 cut(s) 156
Cfr13I GGNCC 1 cut(s) 86
CseI GACGC 1 cut(s) 34
CviAII CATG 2 cut(s) 236, 506
CviJI RGCY 3 cut(s) 172, 234, 466
CviKI_1 RGCY 3 cut(s) 172, 234, 466
DdeI CTNAG 1 cut(s) 420
DpnI GATC 3 cut(s) 418, 491, 569
DpnII GATC 3 cut(s) 416, 489, 567
DrdI GACNNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 13
Eco130I CCWWGG 2 cut(s) 66, 361
Eco32I GATATC 1 cut(s) 523
Eco47I GGWCC 1 cut(s) 86
EcoRV GATATC 1 cut(s) 523
EcoT14I CCWWGG 2 cut(s) 66, 361
ErhI CCWWGG 2 cut(s) 66, 361
FaeI CATG 2 cut(s) 239, 509
FaiI YATR 6 cut(s) 29, 237, 279, 297, 507, 549
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FatI CATG 2 cut(s) 235, 505
FbaI TGATCA 1 cut(s) 489
FokI GGATG 3 cut(s) 20, 410, 446
HgaI GACGC 1 cut(s) 34
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 2 cut(s) 239, 509
HinfI GANTC 3 cut(s) 124, 182, 349
HphI GGTGA 3 cut(s) 82, 377, 388
Hpy166II GTNNAC 3 cut(s) 61, 89, 98
Hpy188I TCNGA 4 cut(s) 22, 123, 421, 498
Hpy188III TCNNGA 5 cut(s) 107, 128, 446, 526, 536
Hpy8I GTNNAC 3 cut(s) 61, 89, 98
Hpy99I CGWCG 2 cut(s) 44, 50
HpyAV CCTTC 5 cut(s) 77, 367, 376, 418, 511
HpyCH4III ACNGT 1 cut(s) 477
HpyCH4IV ACGT 1 cut(s) 166
HpyF10VI GCNNNNNNNGC 1 cut(s) 561
HpyF3I CTNAG 1 cut(s) 420
HpySE526I ACGT 1 cut(s) 166
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 2 cut(s) 239, 509
Ksp22I TGATCA 1 cut(s) 489
Kzo9I GATC 3 cut(s) 416, 489, 567
LpnPI CCDG 4 cut(s) 144, 149, 240, 511
LweI GCATC 1 cut(s) 127
MaeII ACGT 1 cut(s) 166
MaeIII GTNAC 5 cut(s) 107, 154, 259, 329, 353
MalI GATC 3 cut(s) 418, 491, 569
MboI GATC 3 cut(s) 416, 489, 567
MboII GAAGA 4 cut(s) 16, 382, 523, 526
MmeI TCCRAC 1 cut(s) 375
MnlI CCTC 6 cut(s) 28, 70, 86, 372, 442, 571
MseI TTAA 6 cut(s) 54, 144, 174, 230, 405, 429
MspCI CTTAAG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 561
NdeII GATC 3 cut(s) 416, 489, 567
NlaIII CATG 2 cut(s) 239, 509
NmuCI GTSAC 2 cut(s) 107, 154
PfeI GAWTC 3 cut(s) 124, 182, 349
PflFI GACNNNGTC 2 cut(s) 44, 152
PspPI GGNCC 1 cut(s) 86
PsyI GACNNNGTC 2 cut(s) 44, 152
SaqAI TTAA 6 cut(s) 54, 144, 174, 230, 405, 429
Sau3AI GATC 3 cut(s) 416, 489, 567
Sau96I GGNCC 1 cut(s) 86
SfaNI GCATC 1 cut(s) 127
SinI GGWCC 1 cut(s) 86
SmlI CTYRAG 3 cut(s) 173, 264, 446
SmoI CTYRAG 3 cut(s) 173, 264, 446
StyI CCWWGG 2 cut(s) 66, 361
TaaI ACNGT 1 cut(s) 477
TaiI ACGT 1 cut(s) 169
TaqI TCGA 5 cut(s) 81, 129, 215, 415, 576
TfiI GAWTC 3 cut(s) 124, 182, 349
Tru1I TTAA 6 cut(s) 54, 144, 174, 230, 405, 429
Tru9I TTAA 6 cut(s) 54, 144, 174, 230, 405, 429
TscAI CASTG 1 cut(s) 163
TseFI GTSAC 2 cut(s) 107, 154
Tsp45I GTSAC 2 cut(s) 107, 154
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 163
Tth111I GACNNNGTC 2 cut(s) 44, 152
Vha464I CTTAAG 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.