Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005044.1

Orthogroup ID

OG0001380

Physical Location & Seq

Genomic Coordinates Forward (+)

112178 .. 114359

Gene Structure 2182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005044.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

atgaagaccattctttcgtcggagaccatggacattcccgacggggtgaagatcaaggtccacgcgaagatcatcgaggtggaaggcccgcgcggcaagctcgtccgcaacttcaagcacctcaaccttgatttccagctcatcaaggacgaggagaccggccagcgcaagctcaagatcgaggcctggttcggcactcgcaagaccagcgccgccatcaggaccgccctctcgcacgtcgagaatctcatcaccggagtcaccaaggggtaccggtacaagatgaggttcgtgtacgctcattttcccatcaacgcttcgatcactaatggagccaagtcgattgagatcaggaactttctcggtgagaagaaggtgagaaaggtggatatgcttgatggtgtttctatcctccgatctgagaaggtgaaggatgagctgatattggatggcaatgatattgaacttgtttctcggtcttgtgctctgatcaaccaggtgagaaaggtggatatgcttgatggtgtttctatcctccgatctgagaaggtgaaggatgagctgatattggatggcaatgatattgaacttgtttctcggtcttgtgctctgatcaaccagaaatgccatgtcaagaacaaggatatcaggaagtttcttgatggtatctatgttagcgagagggcaaccatcaataccgaggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009955 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048856 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

235

Amino Acids

26.67

Weight (kDa)

9.22

Isoelectric Point (pI)

32.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33120 AT1G33140 AT4G10450 AT4G10450
fragaria_vesca	FvH4_5g10230 FvH4_7g33110
malus_domestica	MD01G1230300.v1.1 MD07G1302000.v1.1 MD16G1260300.v1.1
prunus_persica	Prupe.2G321000_v2.0.a1 Prupe.5G136400_v2.0.a1
pyrus_communis	pycom01g23830 pycom07g09170 pycom07g27520 pycom12g07060
rosa_chinensis	RchiOBHm_Chr1g0334541 RchiOBHm_Chr1g0334651 RchiOBHm_Chr1g0383161 RchiOBHm_Chr2g0169651 RchiOBHm_Chr3g0462551 RchiOBHm_Chr7g0187991
rosa_laevigata	RLG00000004736 RLG00000026125
rosa_multiflora	Rmu_sc0003624.1_g000019 Rmu_sc0005044.1_g000024 Rmu_sc0008563.1_g000005 Rmu_sc0013280.1_g000007 Rmu_sc0023940.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081920 Rroxscaffold_3G00266830 Rroxscaffold_4G00277530
rosa_rugosa	Rorug01G0126100 Rorug01G0439300
rosa_samantha	Rh1AG139700 Rh1AG464900 Rh1BG422200 Rh1CG131600 Rh1CG435500 Rh1DG143700 Rh1DG153800 Rh1DG454900 Rh3AG115500 Rh3BG118900 Rh3CG122300 Rh7AG091500 Rh7BG093000 Rh7CG092300 Rh7DG093700
rosa_wichuraiana	Rw1G009540 Rw1G009550 Rw2G050900 Rw3G009780 Rw7G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	270
AccB1I	GGYRCC	1 cut(s)	270
AccII	CGCG	3 cut(s)	65, 91, 93
AciI	CCGC	5 cut(s)	89, 93, 106, 213, 225
AcoI	YGGCCR	1 cut(s)	160
AfaI	GTAC	3 cut(s)	272, 278, 296
AfiI	CCNNNNNNNGG	1 cut(s)	219
AgeI	ACCGGT	1 cut(s)	273
AgsI	TTSAA	3 cut(s)	115, 464, 587
AjiI	CACGTC	1 cut(s)	238
AjnI	CCWGG	2 cut(s)	185, 495
AluBI	AGCT	5 cut(s)	100, 139, 172, 439, 562
AluI	AGCT	5 cut(s)	100, 139, 172, 439, 562
Alw21I	GWGCWC	2 cut(s)	487, 610
Alw26I	GTCTC	2 cut(s)	17, 149
AoxI	GGCC	3 cut(s)	85, 160, 183
ArsI	GACNNNNNNTTYG	1 cut(s)	30
AsiGI	ACCGGT	1 cut(s)	273
Asp718I	GGTACC	1 cut(s)	270
AspLEI	GCGC	3 cut(s)	93, 168, 212
AspS9I	GGNCC	3 cut(s)	58, 86, 222
AsuHPI	GGTGA	8 cut(s)	58, 244, 253, 377, 388, 439, 511, 562
AvaII	GGWCC	2 cut(s)	58, 222
BanI	GGYRCC	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	2 cut(s)	487, 610
BccI	CCATC	8 cut(s)	224, 317, 392, 443, 515, 566, 656, 698
BciT130I	CCWGG	2 cut(s)	187, 497
BclI	TGATCA	2 cut(s)	489, 612
BcoDI	GTCTC	2 cut(s)	17, 149
BfoI	RGCGCY	1 cut(s)	213
BglI	GCCNNNNNGGC	1 cut(s)	93
BisI	GCNGC	2 cut(s)	94, 213
BlsI	GCNGC	2 cut(s)	95, 214
Bme1390I	CCNGG	2 cut(s)	187, 497
Bme18I	GGWCC	2 cut(s)	58, 222
BmgBI	CACGTC	1 cut(s)	238
BmgT120I	GGNCC	3 cut(s)	58, 86, 222
BmiI	GGNNCC	2 cut(s)	272, 334
BmrFI	CCNGG	2 cut(s)	187, 497
BpiI	GAAGAC	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	158
BsaBI	GATNNNNATC	1 cut(s)	347
BsaI	GGTCTC	2 cut(s)	17, 149
BsaJI	CCNNGG	3 cut(s)	27, 264, 699
BsaWI	WCCGGW	2 cut(s)	254, 273
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse118I	RCCGGY	2 cut(s)	158, 273
Bse3DI	GCAATG	2 cut(s)	460, 583
Bse8I	GATNNNNATC	1 cut(s)	347
BseBI	CCWGG	2 cut(s)	187, 497
BseDI	CCNNGG	3 cut(s)	27, 264, 699
BseGI	GGATG	4 cut(s)	439, 454, 562, 577
BseJI	GATNNNNATC	1 cut(s)	347
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseMI	GCAATG	2 cut(s)	460, 583
BseMII	CTCAG	2 cut(s)	411, 534
BseRI	GAGGAG	1 cut(s)	167
Bsh1236I	CGCG	3 cut(s)	65, 91, 93
BshFI	GGCC	3 cut(s)	87, 162, 185
BshNI	GGYRCC	1 cut(s)	270
BshTI	ACCGGT	1 cut(s)	273
BsiHKAI	GWGCWC	2 cut(s)	487, 610
BsiSI	CCGG	3 cut(s)	159, 255, 274
BslI	CCNNNNNNNGG	1 cut(s)	219
BsmAI	GTCTC	2 cut(s)	17, 149
BsnI	GGCC	3 cut(s)	87, 162, 185
Bso31I	GGTCTC	2 cut(s)	17, 149
Bsp1286I	GDGCHC	2 cut(s)	487, 610
Bsp143I	GATC	9 cut(s)	51, 69, 177, 321, 348, 416, 489, 539, 612
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	5 cut(s)	89, 93, 106, 213, 225
BspANI	GGCC	3 cut(s)	87, 162, 185
BspCNI	CTCAG	2 cut(s)	412, 535
BspFNI	CGCG	3 cut(s)	65, 91, 93
BspLI	GGNNCC	2 cut(s)	272, 334
BspT107I	GGYRCC	1 cut(s)	270
BspTNI	GGTCTC	2 cut(s)	17, 149
BsrDI	GCAATG	2 cut(s)	460, 583
BsrFI	RCCGGY	2 cut(s)	158, 273
BssAI	RCCGGY	2 cut(s)	158, 273
BssECI	CCNNGG	3 cut(s)	27, 264, 699
BssMI	GATC	9 cut(s)	51, 69, 177, 321, 348, 416, 489, 539, 612
BssT1I	CCWWGG	2 cut(s)	27, 264
Bst2UI	CCWGG	2 cut(s)	187, 497
BstC8I	GCNNGC	4 cut(s)	89, 98, 164, 170
BstDEI	CTNAG	2 cut(s)	420, 543
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	4 cut(s)	439, 454, 562, 577
BstFNI	CGCG	3 cut(s)	65, 91, 93
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	3 cut(s)	93, 168, 212
BstKTI	GATC	9 cut(s)	54, 72, 180, 324, 351, 419, 492, 542, 615
BstMAI	GTCTC	2 cut(s)	17, 149
BstMBI	GATC	9 cut(s)	51, 69, 177, 321, 348, 416, 489, 539, 612
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 97, 207
BstNI	CCWGG	2 cut(s)	187, 497
BstSCI	CCNGG	2 cut(s)	185, 495
BstUI	CGCG	3 cut(s)	65, 91, 93
BstV2I	GAAGAC	1 cut(s)	11
BsuRI	GGCC	3 cut(s)	87, 162, 185
BtgI	CCRYGG	1 cut(s)	27
BtrI	CACGTC	1 cut(s)	238
BtsCI	GGATG	4 cut(s)	439, 454, 562, 577
Cac8I	GCNNGC	4 cut(s)	89, 98, 164, 170
CfoI	GCGC	3 cut(s)	93, 168, 212
Cfr10I	RCCGGY	2 cut(s)	158, 273
Cfr13I	GGNCC	3 cut(s)	58, 86, 222
CsiI	ACCWGGT	1 cut(s)	495
Csp6I	GTAC	3 cut(s)	271, 277, 295
CspAI	ACCGGT	1 cut(s)	273
CviAII	CATG	2 cut(s)	28, 629
CviJI	RGCY	9 cut(s)	87, 100, 139, 162, 172, 185, 335, 439, 562
CviKI_1	RGCY	9 cut(s)	87, 100, 139, 162, 172, 185, 335, 439, 562
CviQI	GTAC	3 cut(s)	271, 277, 295
DdeI	CTNAG	2 cut(s)	420, 543
DpnI	GATC	9 cut(s)	53, 71, 179, 323, 350, 418, 491, 541, 614
DpnII	GATC	9 cut(s)	51, 69, 177, 321, 348, 416, 489, 539, 612
EaeI	YGGCCR	1 cut(s)	160
Eco130I	CCWWGG	2 cut(s)	27, 264
Eco147I	AGGCCT	1 cut(s)	185
Eco31I	GGTCTC	2 cut(s)	17, 149
Eco32I	GATATC	1 cut(s)	646
Eco47I	GGWCC	2 cut(s)	58, 222
EcoRII	CCWGG	2 cut(s)	185, 495
EcoRV	GATATC	1 cut(s)	646
EcoT14I	CCWWGG	2 cut(s)	27, 264
ErhI	CCWWGG	2 cut(s)	27, 264
FaeI	CATG	2 cut(s)	31, 632
FaiI	YATR	5 cut(s)	29, 392, 515, 630, 672
FatI	CATG	2 cut(s)	27, 628
FauI	CCCGC	1 cut(s)	96
FbaI	TGATCA	2 cut(s)	489, 612
Fnu4HI	GCNGC	2 cut(s)	94, 213
FokI	GGATG	4 cut(s)	446, 461, 569, 584
Fsp4HI	GCNGC	2 cut(s)	94, 213
GlaI	GCGC	3 cut(s)	92, 167, 211
GluI	GCNGC	2 cut(s)	94, 213
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	3 cut(s)	87, 162, 185
HapII	CCGG	3 cut(s)	159, 255, 274
HhaI	GCGC	3 cut(s)	93, 168, 212
Hin1II	CATG	2 cut(s)	31, 632
Hin6I	GCGC	3 cut(s)	91, 166, 210
HinP1I	GCGC	3 cut(s)	91, 166, 210
HinfI	GANTC	2 cut(s)	244, 258
HpaII	CCGG	3 cut(s)	159, 255, 274
HphI	GGTGA	8 cut(s)	58, 244, 253, 377, 388, 439, 511, 562
Hpy166II	GTNNAC	2 cut(s)	61, 295
Hpy188I	TCNGA	7 cut(s)	22, 416, 421, 489, 539, 544, 612
Hpy188III	TCNNGA	8 cut(s)	38, 175, 220, 241, 352, 634, 649, 659
Hpy8I	GTNNAC	2 cut(s)	61, 295
Hpy99I	CGWCG	3 cut(s)	22, 44, 242
HpyAV	CCTTC	6 cut(s)	77, 367, 418, 424, 541, 547
HpyCH4IV	ACGT	1 cut(s)	237
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 97, 207
HpyF3I	CTNAG	2 cut(s)	420, 543
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	2 cut(s)	31, 632
HspAI	GCGC	3 cut(s)	91, 166, 210
KpnI	GGTACC	1 cut(s)	274
Ksp22I	TGATCA	2 cut(s)	489, 612
Kzo9I	GATC	9 cut(s)	51, 69, 177, 321, 348, 416, 489, 539, 612
LmnI	GCTCC	1 cut(s)	332
MabI	ACCWGGT	1 cut(s)	495
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	9 cut(s)	53, 71, 179, 323, 350, 418, 491, 541, 614
MboI	GATC	9 cut(s)	51, 69, 177, 321, 348, 416, 489, 539, 612
MboII	GAAGA	4 cut(s)	16, 61, 79, 382
MhlI	GDGCHC	2 cut(s)	487, 610
MlyI	GAGTC	1 cut(s)	267
MslI	CAYNNNNRTG	1 cut(s)	77
MspI	CCGG	3 cut(s)	159, 255, 274
MspR9I	CCNGG	2 cut(s)	187, 497
MvaI	CCWGG	2 cut(s)	187, 497
MvnI	CGCG	3 cut(s)	65, 91, 93
MwoI	GCNNNNNNNGC	3 cut(s)	93, 97, 207
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	9 cut(s)	51, 69, 177, 321, 348, 416, 489, 539, 612
NlaIII	CATG	2 cut(s)	31, 632
NlaIV	GGNNCC	2 cut(s)	272, 334
NmuCI	GTSAC	1 cut(s)	259
PceI	AGGCCT	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	244
PinAI	ACCGGT	1 cut(s)	273
PkrI	GCNGC	2 cut(s)	95, 214
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
Psp6I	CCWGG	2 cut(s)	185, 495
PspGI	CCWGG	2 cut(s)	185, 495
PspN4I	GGNNCC	2 cut(s)	272, 334
PspPI	GGNCC	3 cut(s)	58, 86, 222
RsaI	GTAC	3 cut(s)	272, 278, 296
RsaNI	GTAC	3 cut(s)	271, 277, 295
RseI	CAYNNNNRTG	1 cut(s)	77
SatI	GCNGC	2 cut(s)	94, 213
Sau3AI	GATC	9 cut(s)	51, 69, 177, 321, 348, 416, 489, 539, 612
Sau96I	GGNCC	3 cut(s)	58, 86, 222
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	2 cut(s)	187, 497
SduI	GDGCHC	2 cut(s)	487, 610
SexAI	ACCWGGT	1 cut(s)	495
SinI	GGWCC	2 cut(s)	58, 222
SmiMI	CAYNNNNRTG	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SseBI	AGGCCT	1 cut(s)	185
SsiI	CCGC	5 cut(s)	89, 93, 106, 213, 225
StuI	AGGCCT	1 cut(s)	185
StyD4I	CCNGG	2 cut(s)	185, 495
StyI	CCWWGG	2 cut(s)	27, 264
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	5 cut(s)	75, 180, 240, 320, 341
TaqII	GACCGA	2 cut(s)	465, 588
TauI	GCSGC	2 cut(s)	96, 215
TfiI	GAWTC	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	259
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	2 cut(s)	58, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.