Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001380

Physical Location & Seq

Genomic Coordinates Forward (+)

29869138 .. 29871084

Gene Structure 1947 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G321000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAAGACCATTCTGTCCTCCGAGACCATGGACATCCCAGATGGGGTCAAAATCAAGGTCCATGCCAAGATCATAGAGGTCGAAGGTCCTCGTGGCAAGCTTGTTCGTAACTTCAAGCATTTGAACTTGGACTTTCAGCTCATCAAGGATGAGGAAACCGGCAAGCGAAAGCTCAAGATCGATGCCTGGTTTGGCTCACGCAAAACCAGCGCAGCCATTCGCACTGCCCTCTCCCATGTTGAGAATCTCATCACTGGTGTCACCAAGGGCTACCGCTACAAGATGCGTTTTGTATATGCCCATTTTCCCATCAATGCTTCCATCACTAATGCAGCCAAGTCGATCGAGATCCGTAACTTTTTGGGTGAAAAGAAGGTGAGAAAGGTGGATATGCTTGATGGGGTTTCTATCCTCCGATCTGAAAAGGTGAAGGATGAGCTGATATTGGACGGAAATGATATTGAGCTTGTTTCTCGGTCATGTGCTCTGATCAACCAGAAATGCCATGTGAAGAACAAGGATATCAGGAAGTTTCTTGATGGTATCTATGTTAGCGAGAAGGGAACCATCCTTGAAGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009955 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048856 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

195

Amino Acids

22.07

Weight (kDa)

9.48

Isoelectric Point (pI)

29.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33120 AT1G33140 AT4G10450 AT4G10450
fragaria_vesca	FvH4_5g10230 FvH4_7g33110
malus_domestica	MD01G1230300.v1.1 MD07G1302000.v1.1 MD16G1260300.v1.1
prunus_persica	Prupe.2G321000_v2.0.a1 Prupe.5G136400_v2.0.a1
pyrus_communis	pycom01g23830 pycom07g09170 pycom07g27520 pycom12g07060
rosa_chinensis	RchiOBHm_Chr1g0334541 RchiOBHm_Chr1g0334651 RchiOBHm_Chr1g0383161 RchiOBHm_Chr2g0169651 RchiOBHm_Chr3g0462551 RchiOBHm_Chr7g0187991
rosa_laevigata	RLG00000004736 RLG00000026125
rosa_multiflora	Rmu_sc0003624.1_g000019 Rmu_sc0005044.1_g000024 Rmu_sc0008563.1_g000005 Rmu_sc0013280.1_g000007 Rmu_sc0023940.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081920 Rroxscaffold_3G00266830 Rroxscaffold_4G00277530
rosa_rugosa	Rorug01G0126100 Rorug01G0439300
rosa_samantha	Rh1AG139700 Rh1AG464900 Rh1BG422200 Rh1CG131600 Rh1CG435500 Rh1DG143700 Rh1DG153800 Rh1DG454900 Rh3AG115500 Rh3BG118900 Rh3CG122300 Rh7AG091500 Rh7BG093000 Rh7CG092300 Rh7DG093700
rosa_wichuraiana	Rw1G009540 Rw1G009550 Rw2G050900 Rw3G009780 Rw7G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	13
AciI	CCGC	1 cut(s)	274
AclWI	GGATC	1 cut(s)	343
AfiI	CCNNNNNNNGG	2 cut(s)	43, 577
AgsI	TTSAA	3 cut(s)	115, 124, 575
AjnI	CCWGG	1 cut(s)	185
AluBI	AGCT	5 cut(s)	100, 139, 172, 439, 466
AluI	AGCT	5 cut(s)	100, 139, 172, 439, 466
Alw21I	GWGCWC	1 cut(s)	487
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	1 cut(s)	343
ApeKI	GCWGC	2 cut(s)	212, 332
ArsI	GACNNNNNNTTYG	2 cut(s)	42, 74
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	2 cut(s)	58, 86
AsuHPI	GGTGA	4 cut(s)	253, 377, 388, 439
AvaII	GGWCC	2 cut(s)	58, 86
BauI	CACGAG	1 cut(s)	90
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	487
BbvI	GCAGC	2 cut(s)	224, 344
BccI	CCATC	6 cut(s)	35, 317, 329, 392, 533, 575
BcgI	CGANNNNNNTGC	2 cut(s)	321, 355
BciT130I	CCWGG	1 cut(s)	187
BclI	TGATCA	1 cut(s)	489
BcoDI	GTCTC	1 cut(s)	17
BisI	GCNGC	2 cut(s)	213, 333
BlsI	GCNGC	2 cut(s)	214, 334
Bme1390I	CCNGG	1 cut(s)	187
Bme18I	GGWCC	2 cut(s)	58, 86
BmgT120I	GGNCC	2 cut(s)	58, 86
BmiI	GGNNCC	1 cut(s)	565
BmrFI	CCNGG	1 cut(s)	187
BmsI	GCATC	2 cut(s)	172, 273
BpiI	GAAGAC	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	158
Bsa29I	ATCGAT	1 cut(s)	180
BsaBI	GATNNNNATC	1 cut(s)	347
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	2 cut(s)	27, 264
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 577
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	259
Bse8I	GATNNNNATC	1 cut(s)	347
BseBI	CCWGG	1 cut(s)	187
BseCI	ATCGAT	1 cut(s)	180
BseDI	CCNNGG	2 cut(s)	27, 264
BseGI	GGATG	4 cut(s)	33, 154, 439, 567
BseJI	GATNNNNATC	1 cut(s)	347
BseLI	CCNNNNNNNGG	2 cut(s)	43, 577
BseNI	ACTGG	1 cut(s)	259
BseXI	GCAGC	2 cut(s)	224, 344
Bsh1285I	CGRYCG	1 cut(s)	345
BshVI	ATCGAT	1 cut(s)	180
BsiEI	CGRYCG	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	487
BsiSI	CCGG	1 cut(s)	159
BslI	CCNNNNNNNGG	2 cut(s)	43, 577
BsmAI	GTCTC	1 cut(s)	17
Bso31I	GGTCTC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	487
Bsp143I	GATC	6 cut(s)	69, 177, 342, 348, 416, 489
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	1 cut(s)	274
BspDI	ATCGAT	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	565
BspPI	GGATC	1 cut(s)	343
BspTNI	GGTCTC	1 cut(s)	17
BsrFI	RCCGGY	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	259
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	2 cut(s)	27, 264
BssMI	GATC	6 cut(s)	69, 177, 342, 348, 416, 489
BssSI	CACGAG	1 cut(s)	90
BssT1I	CCWWGG	2 cut(s)	27, 264
Bst2BI	CACGAG	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	187
Bst6I	CTCTTC	1 cut(s)	570
BstC8I	GCNNGC	2 cut(s)	98, 164
BstDSI	CCRYGG	1 cut(s)	27
BstENI	CCTNNNNNAGG	1 cut(s)	575
BstF5I	GGATG	4 cut(s)	33, 154, 439, 567
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	6 cut(s)	72, 180, 345, 351, 419, 492
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	6 cut(s)	69, 177, 342, 348, 416, 489
BstMCI	CGRYCG	1 cut(s)	345
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstNI	CCWGG	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	185
BstV1I	GCAGC	2 cut(s)	224, 344
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	348
BstYI	RGATCY	1 cut(s)	348
Bsu15I	ATCGAT	1 cut(s)	180
BsuTUI	ATCGAT	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	27
BtsCI	GGATG	4 cut(s)	33, 154, 439, 567
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	2 cut(s)	222, 252
Cac8I	GCNNGC	2 cut(s)	98, 164
CfoI	GCGC	1 cut(s)	212
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	58, 86
ClaI	ATCGAT	1 cut(s)	180
CviAII	CATG	5 cut(s)	28, 62, 236, 480, 506
CviJI	RGCY	9 cut(s)	100, 139, 172, 195, 215, 270, 335, 439, 466
CviKI_1	RGCY	9 cut(s)	100, 139, 172, 195, 215, 270, 335, 439, 466
DpnI	GATC	6 cut(s)	71, 179, 344, 350, 418, 491
DpnII	GATC	6 cut(s)	69, 177, 342, 348, 416, 489
DrdI	GACNNNNNNGTC	1 cut(s)	13
DseDI	GACNNNNNNGTC	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
Eco130I	CCWWGG	2 cut(s)	27, 264
Eco31I	GGTCTC	1 cut(s)	17
Eco32I	GATATC	1 cut(s)	523
Eco47I	GGWCC	2 cut(s)	58, 86
EcoNI	CCTNNNNNAGG	1 cut(s)	575
EcoO109I	RGGNCCY	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	185
EcoRV	GATATC	1 cut(s)	523
EcoT14I	CCWWGG	2 cut(s)	27, 264
ErhI	CCWWGG	2 cut(s)	27, 264
FaeI	CATG	5 cut(s)	31, 65, 239, 483, 509
FatI	CATG	5 cut(s)	27, 61, 235, 479, 505
FbaI	TGATCA	1 cut(s)	489
Fnu4HI	GCNGC	2 cut(s)	213, 333
FokI	GGATG	4 cut(s)	20, 161, 446, 554
Fsp4HI	GCNGC	2 cut(s)	213, 333
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	2 cut(s)	213, 333
HapII	CCGG	1 cut(s)	159
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	5 cut(s)	31, 65, 239, 483, 509
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	4 cut(s)	253, 377, 388, 439
Hpy188I	TCNGA	4 cut(s)	22, 416, 421, 489
Hpy188III	TCNNGA	4 cut(s)	175, 346, 526, 536
HpyAV	CCTTC	4 cut(s)	77, 367, 424, 553
HpyCH4V	TGCA	1 cut(s)	332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
Hsp92II	CATG	5 cut(s)	31, 65, 239, 483, 509
HspAI	GCGC	1 cut(s)	210
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	6 cut(s)	69, 177, 342, 348, 416, 489
LpnPI	CCDG	8 cut(s)	51, 172, 172, 199, 220, 240, 509, 511
Lsp1109I	GCAGC	2 cut(s)	224, 344
LweI	GCATC	2 cut(s)	172, 273
MaeIII	GTNAC	3 cut(s)	107, 259, 353
MalI	GATC	6 cut(s)	71, 179, 344, 350, 418, 491
MboI	GATC	6 cut(s)	69, 177, 342, 348, 416, 489
MboII	GAAGA	2 cut(s)	16, 523
MflI	RGATCY	1 cut(s)	348
MhlI	GDGCHC	1 cut(s)	487
MnlI	CCTC	7 cut(s)	28, 70, 99, 145, 239, 422, 571
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	187
MwoI	GCNNNNNNNGC	1 cut(s)	207
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	6 cut(s)	69, 177, 342, 348, 416, 489
NlaIII	CATG	5 cut(s)	31, 65, 239, 483, 509
NlaIV	GGNNCC	1 cut(s)	565
NmuCI	GTSAC	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	244
PkrI	GCNGC	2 cut(s)	214, 334
Ple19I	CGATCG	1 cut(s)	345
PpuMI	RGGWCCY	1 cut(s)	86
Psp5II	RGGWCCY	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	185
PspN4I	GGNNCC	1 cut(s)	565
PspPI	GGNCC	2 cut(s)	58, 86
PspPPI	RGGWCCY	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	348
PvuI	CGATCG	1 cut(s)	345
SatI	GCNGC	2 cut(s)	213, 333
Sau3AI	GATC	6 cut(s)	69, 177, 342, 348, 416, 489
Sau96I	GGNCC	2 cut(s)	58, 86
ScrFI	CCNGG	1 cut(s)	187
SduI	GDGCHC	1 cut(s)	487
SfaNI	GCATC	2 cut(s)	172, 273
SinI	GGWCC	2 cut(s)	58, 86
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SsiI	CCGC	1 cut(s)	274
StyD4I	CCNGG	1 cut(s)	185
StyI	CCWWGG	2 cut(s)	27, 264
TaqI	TCGA	4 cut(s)	81, 180, 341, 345
TaqII	GACCGA	1 cut(s)	465
TfiI	GAWTC	1 cut(s)	244
TscAI	CASTG	2 cut(s)	229, 259
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	2 cut(s)	212, 332
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	341, 465
TspRI	CASTG	2 cut(s)	229, 259
VpaK11BI	GGWCC	2 cut(s)	58, 86
XagI	CCTNNNNNAGG	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.