Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001380

Physical Location & Seq

Genomic Coordinates Forward (+)

23640496 .. 23642364

Gene Structure 1869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g33110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAAGACCATTCTGTCGTCGGAGACCATGGACATCCCCGACGGGGTGAAGATCAAGGTCCACGCGAAGATCATCGAGGTGGAAGGCCCACGCGGCAAGCTCGTCCGCAACTTCAAGCATCTCAATCTGGACTTCCAGCTCATTAAGGACGAGGAGACTGGGCAGCGCAAGCTCAAGATCGAGGCCTGGTTCGGCACTCGCAAGACCAGCGCCGCCATCAGGACTGCTCTCTCGCACGTCGAGAATCTCATCACCGGCGTCACCAAGGGGTACAGGTACAAGATGAGGTTCGTGTATGCTCATTTTCCGATCAACGCTTCGATTACCAGCGGAGCTAAGGCGATTGAGATCAGGAACTTTCTCGGTGAGAAGAAGGTGAGGAAGGTCGAAATGCTTGATGGTGTACAAATCACCAGATCTGAGAAGGTAAAGGATGAGCTGATATTGGACGGCAATGACATTGAACTTGTTTCTAGGTCTTGTGCTCTGATCAACCAGAAATGCCATGTCAAGAACAAGGATATCAGGAAGTTTCTTGATGGTATCTATGTTAGCGAGAGGGGAACCATCACTACTGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009955 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048856 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6

Protein Analysis

195

Amino Acids

22.07

Weight (kDa)

9.52

Isoelectric Point (pI)

26.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L6	PF00347	12 - 90	1.7e-09	Ribosomal protein L6
Ribosomal_L6	PF00347	113 - 181	1.8e-12	Ribosomal protein L6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33120 AT1G33140 AT4G10450 AT4G10450
fragaria_vesca	FvH4_5g10230 FvH4_7g33110
malus_domestica	MD01G1230300.v1.1 MD07G1302000.v1.1 MD16G1260300.v1.1
prunus_persica	Prupe.2G321000_v2.0.a1 Prupe.5G136400_v2.0.a1
pyrus_communis	pycom01g23830 pycom07g09170 pycom07g27520 pycom12g07060
rosa_chinensis	RchiOBHm_Chr1g0334541 RchiOBHm_Chr1g0334651 RchiOBHm_Chr1g0383161 RchiOBHm_Chr2g0169651 RchiOBHm_Chr3g0462551 RchiOBHm_Chr7g0187991
rosa_laevigata	RLG00000004736 RLG00000026125
rosa_multiflora	Rmu_sc0003624.1_g000019 Rmu_sc0005044.1_g000024 Rmu_sc0008563.1_g000005 Rmu_sc0013280.1_g000007 Rmu_sc0023940.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081920 Rroxscaffold_3G00266830 Rroxscaffold_4G00277530
rosa_rugosa	Rorug01G0126100 Rorug01G0439300
rosa_samantha	Rh1AG139700 Rh1AG464900 Rh1BG422200 Rh1CG131600 Rh1CG435500 Rh1DG143700 Rh1DG153800 Rh1DG454900 Rh3AG115500 Rh3BG118900 Rh3CG122300 Rh7AG091500 Rh7BG093000 Rh7CG092300 Rh7DG093700
rosa_wichuraiana	Rw1G009540 Rw1G009550 Rw2G050900 Rw3G009780 Rw7G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	13
AccII	CGCG	2 cut(s)	65, 93
AciI	CCGC	4 cut(s)	93, 106, 213, 330
AcyI	GRCGYC	1 cut(s)	258
AfaI	GTAC	3 cut(s)	272, 278, 405
AfiI	CCNNNNNNNGG	2 cut(s)	43, 219
AgsI	TTSAA	2 cut(s)	115, 464
AjiI	CACGTC	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	185
AluBI	AGCT	5 cut(s)	100, 139, 172, 335, 439
AluI	AGCT	5 cut(s)	100, 139, 172, 335, 439
Alw21I	GWGCWC	1 cut(s)	487
Alw26I	GTCTC	2 cut(s)	17, 149
AoxI	GGCC	2 cut(s)	85, 183
ApeKI	GCWGC	1 cut(s)	163
AspLEI	GCGC	2 cut(s)	168, 212
AspS9I	GGNCC	2 cut(s)	58, 86
AsuHPI	GGTGA	6 cut(s)	58, 244, 253, 377, 388, 403
AvaII	GGWCC	1 cut(s)	58
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	487
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	4 cut(s)	224, 392, 533, 575
BceAI	ACGGC	1 cut(s)	466
BciT130I	CCWGG	1 cut(s)	187
BclI	TGATCA	1 cut(s)	489
BcoDI	GTCTC	2 cut(s)	17, 149
BfaI	CTAG	1 cut(s)	474
BfoI	RGCGCY	1 cut(s)	213
BglI	GCCNNNNNGGC	1 cut(s)	93
BglII	AGATCT	1 cut(s)	416
BisI	GCNGC	3 cut(s)	94, 164, 213
BlsI	GCNGC	3 cut(s)	95, 165, 214
Bme1390I	CCNGG	1 cut(s)	187
Bme18I	GGWCC	1 cut(s)	58
BmgBI	CACGTC	1 cut(s)	238
BmgT120I	GGNCC	2 cut(s)	58, 86
BmiI	GGNNCC	1 cut(s)	565
BmrFI	CCNGG	1 cut(s)	187
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	1 cut(s)	127
BmuI	ACTGGG	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	11
Bpu10I	CCTNAGC	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	158
BsaBI	GATNNNNATC	1 cut(s)	347
BsaHI	GRCGYC	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	2 cut(s)	27, 264
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 219
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	1 cut(s)	163
Bse3DI	GCAATG	1 cut(s)	460
Bse8I	GATNNNNATC	1 cut(s)	347
BseBI	CCWGG	1 cut(s)	187
BseDI	CCNNGG	2 cut(s)	27, 264
BseGI	GGATG	2 cut(s)	33, 439
BseJI	GATNNNNATC	1 cut(s)	347
BseLI	CCNNNNNNNGG	2 cut(s)	43, 219
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	2 cut(s)	411, 567
BseNI	ACTGG	1 cut(s)	163
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	175
Bsh1236I	CGCG	2 cut(s)	65, 93
BshFI	GGCC	2 cut(s)	87, 185
BsiHKAI	GWGCWC	1 cut(s)	487
BsiSI	CCGG	1 cut(s)	255
BslI	CCNNNNNNNGG	2 cut(s)	43, 219
BsmAI	GTCTC	2 cut(s)	17, 149
BsnI	GGCC	2 cut(s)	87, 185
Bso31I	GGTCTC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	487
Bsp1407I	TGTACA	1 cut(s)	403
Bsp143I	GATC	7 cut(s)	51, 69, 177, 309, 348, 416, 489
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	4 cut(s)	93, 106, 213, 330
BspANI	GGCC	2 cut(s)	87, 185
BspCNI	CTCAG	2 cut(s)	412, 568
BspFNI	CGCG	2 cut(s)	65, 93
BspLI	GGNNCC	1 cut(s)	565
BspTNI	GGTCTC	1 cut(s)	17
BsrDI	GCAATG	1 cut(s)	460
BsrFI	RCCGGY	1 cut(s)	254
BsrGI	TGTACA	1 cut(s)	403
BsrI	ACTGG	1 cut(s)	163
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	2 cut(s)	27, 264
BssMI	GATC	7 cut(s)	51, 69, 177, 309, 348, 416, 489
BssNI	GRCGYC	1 cut(s)	258
BssT1I	CCWWGG	2 cut(s)	27, 264
Bst2UI	CCWGG	1 cut(s)	187
BstACI	GRCGYC	1 cut(s)	258
BstAUI	TGTACA	1 cut(s)	403
BstC8I	GCNNGC	2 cut(s)	98, 170
BstDEI	CTNAG	3 cut(s)	336, 420, 576
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	33, 439
BstFNI	CGCG	2 cut(s)	65, 93
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	2 cut(s)	168, 212
BstKTI	GATC	7 cut(s)	54, 72, 180, 312, 351, 419, 492
BstMAI	GTCTC	2 cut(s)	17, 149
BstMBI	GATC	7 cut(s)	51, 69, 177, 309, 348, 416, 489
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 169, 207
BstNI	CCWGG	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	185
BstUI	CGCG	2 cut(s)	65, 93
BstV1I	GCAGC	1 cut(s)	175
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
BsuRI	GGCC	2 cut(s)	87, 185
BtgI	CCRYGG	1 cut(s)	27
BtrI	CACGTC	1 cut(s)	238
BtsCI	GGATG	2 cut(s)	33, 439
Cac8I	GCNNGC	2 cut(s)	98, 170
CfoI	GCGC	2 cut(s)	168, 212
Cfr10I	RCCGGY	1 cut(s)	254
Cfr13I	GGNCC	2 cut(s)	58, 86
CseI	GACGC	1 cut(s)	247
Csp6I	GTAC	3 cut(s)	271, 277, 404
CviAII	CATG	2 cut(s)	28, 506
CviJI	RGCY	7 cut(s)	87, 100, 139, 172, 185, 335, 439
CviKI_1	RGCY	7 cut(s)	87, 100, 139, 172, 185, 335, 439
CviQI	GTAC	3 cut(s)	271, 277, 404
DdeI	CTNAG	3 cut(s)	336, 420, 576
DpnI	GATC	7 cut(s)	53, 71, 179, 311, 350, 418, 491
DpnII	GATC	7 cut(s)	51, 69, 177, 309, 348, 416, 489
DrdI	GACNNNNNNGTC	1 cut(s)	13
DseDI	GACNNNNNNGTC	1 cut(s)	13
Eco130I	CCWWGG	2 cut(s)	27, 264
Eco147I	AGGCCT	1 cut(s)	185
Eco31I	GGTCTC	1 cut(s)	17
Eco32I	GATATC	1 cut(s)	523
Eco47I	GGWCC	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	185
EcoRV	GATATC	1 cut(s)	523
EcoT14I	CCWWGG	2 cut(s)	27, 264
ErhI	CCWWGG	2 cut(s)	27, 264
FaeI	CATG	2 cut(s)	31, 509
FaiI	YATR	4 cut(s)	29, 297, 507, 549
FatI	CATG	2 cut(s)	27, 505
FbaI	TGATCA	1 cut(s)	489
Fnu4HI	GCNGC	3 cut(s)	94, 164, 213
FokI	GGATG	2 cut(s)	20, 446
Fsp4HI	GCNGC	3 cut(s)	94, 164, 213
FspBI	CTAG	1 cut(s)	474
GlaI	GCGC	2 cut(s)	167, 211
GluI	GCNGC	3 cut(s)	94, 164, 213
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	87, 185
HapII	CCGG	1 cut(s)	255
HgaI	GACGC	1 cut(s)	247
HhaI	GCGC	2 cut(s)	168, 212
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	2 cut(s)	31, 509
Hin6I	GCGC	2 cut(s)	166, 210
HinP1I	GCGC	2 cut(s)	166, 210
HinfI	GANTC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	6 cut(s)	58, 244, 253, 377, 388, 403
Hpy166II	GTNNAC	2 cut(s)	61, 404
Hpy188I	TCNGA	4 cut(s)	22, 309, 421, 489
Hpy188III	TCNNGA	8 cut(s)	128, 175, 220, 241, 352, 511, 526, 536
Hpy8I	GTNNAC	2 cut(s)	61, 404
Hpy99I	CGWCG	3 cut(s)	22, 44, 242
HpyAV	CCTTC	4 cut(s)	77, 367, 376, 418
HpyCH4IV	ACGT	1 cut(s)	237
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 169, 207
HpyF3I	CTNAG	3 cut(s)	336, 420, 576
HpySE526I	ACGT	1 cut(s)	237
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	2 cut(s)	31, 509
HspAI	GCGC	2 cut(s)	166, 210
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	7 cut(s)	51, 69, 177, 309, 348, 416, 489
LmnI	GCTCC	1 cut(s)	332
Lsp1109I	GCAGC	1 cut(s)	175
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	1 cut(s)	474
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	7 cut(s)	53, 71, 179, 311, 350, 418, 491
MboI	GATC	7 cut(s)	51, 69, 177, 309, 348, 416, 489
MboII	GAAGA	4 cut(s)	16, 61, 79, 382
MflI	RGATCY	1 cut(s)	416
MhlI	GDGCHC	1 cut(s)	487
MnlI	CCTC	7 cut(s)	70, 145, 175, 279, 372, 552, 571
MseI	TTAA	1 cut(s)	144
MslI	CAYNNNNRTG	1 cut(s)	77
MspA1I	CMGCKG	1 cut(s)	330
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	187
MvnI	CGCG	2 cut(s)	65, 93
MwoI	GCNNNNNNNGC	3 cut(s)	93, 169, 207
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	7 cut(s)	51, 69, 177, 309, 348, 416, 489
NlaIII	CATG	2 cut(s)	31, 509
NlaIV	GGNNCC	1 cut(s)	565
NmuCI	GTSAC	1 cut(s)	259
PceI	AGGCCT	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	244
PkrI	GCNGC	3 cut(s)	95, 165, 214
Psp6I	CCWGG	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	185
PspN4I	GGNNCC	1 cut(s)	565
PspPI	GGNCC	2 cut(s)	58, 86
PsrI	GAACNNNNNNTAC	1 cut(s)	556
PsuI	RGATCY	1 cut(s)	416
RsaI	GTAC	3 cut(s)	272, 278, 405
RsaNI	GTAC	3 cut(s)	271, 277, 404
RseI	CAYNNNNRTG	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	3 cut(s)	94, 164, 213
Sau3AI	GATC	7 cut(s)	51, 69, 177, 309, 348, 416, 489
Sau96I	GGNCC	2 cut(s)	58, 86
ScrFI	CCNGG	1 cut(s)	187
SduI	GDGCHC	1 cut(s)	487
SfaNI	GCATC	1 cut(s)	127
SgrAI	CRCCGGYG	1 cut(s)	254
SinI	GGWCC	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
SseBI	AGGCCT	1 cut(s)	185
SsiI	CCGC	4 cut(s)	93, 106, 213, 330
SspMI	CTAG	1 cut(s)	474
StuI	AGGCCT	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	185
StyI	CCWWGG	2 cut(s)	27, 264
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	5 cut(s)	75, 180, 240, 320, 387
TatI	WGTACW	1 cut(s)	403
TauI	GCSGC	2 cut(s)	96, 215
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	1 cut(s)	163
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	58
XspI	CTAG	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.