pycom07g09170

60s ribosomal protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
8417248 .. 8417738
491 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g09170.3

Sequence Viewer

Length: 396 bp
ATGGTTAGGACAAAACCCAATATTAAACTAGCCTATCTTTGTTCGTTTATCCTCTCTTCCTTTCTTATCTCTGTTATTCCCTGCCTCCATAACCTCAAATTCCTCATCTCCTTTCGTCACCAACCGGAGTTGCAAAGCGAGAGAGTGAGAGAAACAACCAGAGTAGCGAATATGATGACCATCCTCTCCTCTGAGACCATGGACATCCATGACGGTGTCAAGATCAAGCGGAAGCTGAAGGTCAAGGCCTGGATCGAATCCCTCAAAATCAGCCCCGCCATCCGCACCGCTCTCTCCCACATCGGAAATCTCATCACCAAGGGGTATCGCTACAAGATGTGTTTGTGTATGCTAATTTTTCCATCAATGCCTCCATCACTAATAAGACCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

132

Amino Acids

15.05

Weight (kDa)

10.14

Isoelectric Point (pI)

58.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 290
AciI CCGC 4 cut(s) 229, 276, 283, 288
AclWI GGATC 1 cut(s) 260
AcsI RAATTY 1 cut(s) 98
AcuI CTGAAG 1 cut(s) 257
AjnI CCWGG 1 cut(s) 248
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
Alw26I GTCTC 1 cut(s) 188
AlwI GGATC 1 cut(s) 260
AoxI GGCC 1 cut(s) 246
ApoI RAATTY 1 cut(s) 98
AsuHPI GGTGA 2 cut(s) 110, 307
BccI CCATC 4 cut(s) 188, 287, 370, 382
BciT130I CCWGG 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 1 cut(s) 29
Bme1390I CCNGG 1 cut(s) 250
BmrFI CCNGG 1 cut(s) 250
BsaBI GATNNNNATC 1 cut(s) 179
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 2 cut(s) 198, 318
BsaWI WCCGGW 1 cut(s) 124
Bse8I GATNNNNATC 1 cut(s) 179
BseBI CCWGG 1 cut(s) 250
BseDI CCNNGG 2 cut(s) 198, 318
BseGI GGATG 3 cut(s) 180, 204, 279
BseJI GATNNNNATC 1 cut(s) 179
BseMII CTCAG 1 cut(s) 183
BseRI GAGGAG 1 cut(s) 178
BshFI GGCC 1 cut(s) 248
BsiSI CCGG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 188
BsnI GGCC 1 cut(s) 248
Bso31I GGTCTC 1 cut(s) 188
Bsp143I GATC 2 cut(s) 222, 252
Bsp19I CCATGG 1 cut(s) 198
BspACI CCGC 4 cut(s) 229, 276, 283, 288
BspANI GGCC 1 cut(s) 248
BspCNI CTCAG 1 cut(s) 184
BspPI GGATC 1 cut(s) 260
BspTNI GGTCTC 1 cut(s) 188
BsrBI CCGCTC 1 cut(s) 290
BssECI CCNNGG 2 cut(s) 198, 318
BssMI GATC 2 cut(s) 222, 252
BssT1I CCWWGG 2 cut(s) 198, 318
Bst2UI CCWGG 1 cut(s) 250
Bst4CI ACNGT 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 192
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 3 cut(s) 180, 204, 279
BstKTI GATC 2 cut(s) 225, 255
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 2 cut(s) 222, 252
BstNI CCWGG 1 cut(s) 250
BstSCI CCNGG 1 cut(s) 248
BsuRI GGCC 1 cut(s) 248
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 3 cut(s) 180, 204, 279
CviAII CATG 2 cut(s) 199, 209
CviJI RGCY 4 cut(s) 32, 235, 248, 273
CviKI_1 RGCY 4 cut(s) 32, 235, 248, 273
DdeI CTNAG 1 cut(s) 192
DpnI GATC 2 cut(s) 224, 254
DpnII GATC 2 cut(s) 222, 252
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
Eco130I CCWWGG 2 cut(s) 198, 318
Eco147I AGGCCT 1 cut(s) 248
Eco31I GGTCTC 1 cut(s) 188
Eco57I CTGAAG 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 248
EcoT14I CCWWGG 2 cut(s) 198, 318
ErhI CCWWGG 2 cut(s) 198, 318
FaeI CATG 2 cut(s) 202, 212
FaiI YATR 5 cut(s) 90, 173, 200, 210, 350
FatI CATG 2 cut(s) 198, 208
FauI CCCGC 1 cut(s) 283
FokI GGATG 3 cut(s) 167, 191, 266
FspBI CTAG 1 cut(s) 29
HaeIII GGCC 1 cut(s) 248
HapII CCGG 1 cut(s) 125
Hin1II CATG 2 cut(s) 202, 212
HinfI GANTC 1 cut(s) 257
HpaII CCGG 1 cut(s) 125
HphI GGTGA 2 cut(s) 110, 307
Hpy188I TCNGA 2 cut(s) 193, 305
Hpy188III TCNNGA 1 cut(s) 220
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4V TGCA 1 cut(s) 133
HpyF3I CTNAG 1 cut(s) 192
Hsp92II CATG 2 cut(s) 202, 212
Kzo9I GATC 2 cut(s) 222, 252
LpnPI CCDG 5 cut(s) 94, 138, 172, 235, 262
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 1 cut(s) 116
MalI GATC 2 cut(s) 224, 254
MbiI CCGCTC 1 cut(s) 290
MboI GATC 2 cut(s) 222, 252
MboII GAAGA 1 cut(s) 48
MluCI AATT 2 cut(s) 98, 354
MnlI CCTC 8 cut(s) 62, 95, 104, 113, 194, 199, 272, 381
MseI TTAA 1 cut(s) 24
MslI CAYNNNNRTG 1 cut(s) 213
MspI CCGG 1 cut(s) 125
MspR9I CCNGG 1 cut(s) 250
MvaI CCWGG 1 cut(s) 250
NcoI CCATGG 1 cut(s) 198
NdeII GATC 2 cut(s) 222, 252
NlaIII CATG 2 cut(s) 202, 212
NmuCI GTSAC 1 cut(s) 116
PceI AGGCCT 1 cut(s) 248
PfeI GAWTC 1 cut(s) 257
PflFI GACNNNGTC 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 248
PspGI CCWGG 1 cut(s) 248
PsyI GACNNNGTC 1 cut(s) 215
RseI CAYNNNNRTG 1 cut(s) 213
SaqAI TTAA 1 cut(s) 24
Sau3AI GATC 2 cut(s) 222, 252
ScrFI CCNGG 1 cut(s) 250
SetI ASST 3 cut(s) 96, 237, 243
SmiMI CAYNNNNRTG 1 cut(s) 213
Sse9I AATT 2 cut(s) 98, 354
SseBI AGGCCT 1 cut(s) 248
SsiI CCGC 4 cut(s) 229, 276, 283, 288
SspI AATATT 1 cut(s) 22
SspMI CTAG 1 cut(s) 29
StuI AGGCCT 1 cut(s) 248
StyD4I CCNGG 1 cut(s) 248
StyI CCWWGG 2 cut(s) 198, 318
TaaI ACNGT 1 cut(s) 215
TaqI TCGA 1 cut(s) 255
TasI AATT 2 cut(s) 98, 354
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TseFI GTSAC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 116
Tth111I GACNNNGTC 1 cut(s) 215
XapI RAATTY 1 cut(s) 98
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.