AT1G33730

iron ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001080
Physical Location & Seq
Forward (+)
12226852 .. 12228556
1705 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G33730.2

Sequence Viewer

Length: 1107 bp
ATGACGTTTACTCAGCTGTTCTCACCGCAGCGTATCGAGGCTACTAAAGCTCTGAGAATGAAGAAGGTGCAAGAACTTGTCAACTTTTTGAGTGAAAGCAGTGAGAGAGGAGAAGCTGTTGACATTTCTCGTGCATCTTTCGTCACAGCTCTCAATATCATATCGAATATTTTGTTTTCAGTCAATCTCGGTAGCTACGATTCGAAAAATTCAAGTGCGTTTCAGGAGATGGTGATTGGTTACATGGAATCTATCGGAAATCCAGACGTTTCTAACTTCTTCCCATTTATGAGGTTACTTGACTTACAAGGTAATAGTAAGAAGATGAAAGAGTACTCGGGTAAATTGCTTCAGGTATTTAGAGAGTTTTACGATGCTAGGATTTTGGAAAACTCATCGCGTATAGATGAGAAAGATGTTTCGAGCAGAGACTTCTTGGATGCACTAATCGATCTCCAACAAGGAGATGAATCTGAAATCAACATTGACGAGATCGAACACCTACTTCTCGATATGTTTCTAGCAGGCACAGATACAAACTCTAGTACCGTGGAATGGGCAATGACAGAGTTACTTGGAAACCCTAAAACGATGACAAAAGTTCAAGACGAGATCAATCGTGTGATAAGGCAAAACGGCGACGTTCAAGAGTCTCATATCTCAAAACTGCCGTATTTACAAGCGGTCATAAAAGAAACTTTCCGATTACACCCGGCTGCTCCATTTCTCCTCCCAAGAAAAGCGGAAAGGGACGTAGATATTCTTGGATTCCATGTGCCTAAAGACTCTCATGTTCTTGTGAACGTGTGGGCCATAGGACGAGACCCAAATGTATGGGAAAATCCGACTCAGTTTGAGCCAGAGAGGTTTTTAGGGAAAGATATTGATGTAAAAGGTACAAATTATGAGCTTACACCATTTGGGGCCGGGCGTAGAATTTGTCCGGGACTGCCTTTAGCTTTGAAAACAGTGCATCTCATGCTTGCTTCTCTTCTCTATACCTTTGAGTGGAAGCTTCCAAACGGTGTCGGTTCAGAGGATTTAGACATGGGAGAGACCTTTGGTCTCACAGTGCACAAGACAAACCCGTTACTTGCGTGCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

368

Amino Acids

41.6

Weight (kDa)

5.06

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 5 - 360 2.6e-89 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 400
AciI CCGC 3 cut(s) 26, 683, 743
AcsI RAATTY 2 cut(s) 208, 936
AcuI CTGAAG 1 cut(s) 335
AfaI GTAC 3 cut(s) 335, 547, 898
AfiI CCNNNNNNNGG 2 cut(s) 555, 1008
AflIII ACRYGT 1 cut(s) 804
AgsI TTSAA 4 cut(s) 213, 605, 647, 964
AhdI GACNNNNNGTC 1 cut(s) 1062
AluBI AGCT 8 cut(s) 16, 50, 116, 149, 195, 910, 959, 1015
AluI AGCT 8 cut(s) 16, 50, 116, 149, 195, 910, 959, 1015
Alw21I GWGCWC 1 cut(s) 1077
Alw26I GTCTC 5 cut(s) 423, 657, 816, 1049, 1070
Alw44I GTGCAC 1 cut(s) 1073
Ama87I CYCGRG 1 cut(s) 337
AoxI GGCC 2 cut(s) 810, 924
ApaLI GTGCAC 1 cut(s) 1073
ApeKI GCWGC 2 cut(s) 28, 716
ApoI RAATTY 2 cut(s) 208, 936
AspS9I GGNCC 2 cut(s) 810, 924
AsuC2I CCSGG 3 cut(s) 713, 928, 945
AsuHPI GGTGA 2 cut(s) 15, 244
AsuII TTCGAA 1 cut(s) 203
AvaI CYCGRG 1 cut(s) 337
BaeGI GKGCMC 1 cut(s) 1077
BaeI ACNNNNGTAYC 2 cut(s) 529, 562
BauI CACGAG 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 1077
BbvI GCAGC 2 cut(s) 40, 703
BccI CCATC 1 cut(s) 223
BceAI ACGGC 2 cut(s) 652, 655
BcnI CCSGG 3 cut(s) 713, 928, 945
BcoDI GTCTC 5 cut(s) 423, 657, 816, 1049, 1070
BfaI CTAG 3 cut(s) 378, 521, 543
BisI GCNGC 2 cut(s) 29, 717
BlsI GCNGC 2 cut(s) 30, 718
BmcAI AGTACT 1 cut(s) 335
Bme1390I CCNGG 3 cut(s) 713, 928, 945
BmeRI GACNNNNNGTC 1 cut(s) 1062
BmeT110I CYCGRG 1 cut(s) 337
BmgT120I GGNCC 2 cut(s) 810, 924
BmiI GGNNCC 1 cut(s) 925
BmrFI CCNGG 3 cut(s) 713, 928, 945
BmsI GCATC 4 cut(s) 143, 364, 430, 982
Bpu14I TTCGAA 1 cut(s) 203
BpuMI CCSGG 3 cut(s) 713, 928, 945
Bsa29I ATCGAT 1 cut(s) 450
BsaI GGTCTC 3 cut(s) 816, 1049, 1070
BsaJI CCNNGG 1 cut(s) 549
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bsc4I CCNNNNNNNGG 2 cut(s) 555, 1008
Bse3DI GCAATG 1 cut(s) 567
BseCI ATCGAT 1 cut(s) 450
BseDI CCNNGG 1 cut(s) 549
BseGI GGATG 1 cut(s) 445
BseLI CCNNNNNNNGG 2 cut(s) 555, 1008
BseMI GCAATG 1 cut(s) 567
BseMII CTCAG 3 cut(s) 26, 44, 863
BseRI GAGGAG 2 cut(s) 123, 719
BseSI GKGCMC 1 cut(s) 1077
BseXI GCAGC 2 cut(s) 40, 703
Bsh1236I CGCG 1 cut(s) 400
BshFI GGCC 2 cut(s) 812, 926
BshVI ATCGAT 1 cut(s) 450
BsiHKAI GWGCWC 1 cut(s) 1077
BsiHKCI CYCGRG 1 cut(s) 337
BsiSI CCGG 3 cut(s) 713, 927, 944
BslFI GGGAC 2 cut(s) 764, 960
BslI CCNNNNNNNGG 2 cut(s) 555, 1008
BsmAI GTCTC 5 cut(s) 423, 657, 816, 1049, 1070
BsmFI GGGAC 2 cut(s) 764, 960
BsnI GGCC 2 cut(s) 812, 926
Bso31I GGTCTC 3 cut(s) 816, 1049, 1070
BsoBI CYCGRG 1 cut(s) 337
Bsp119I TTCGAA 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 1077
Bsp143I GATC 3 cut(s) 451, 492, 612
BspACI CCGC 3 cut(s) 26, 683, 743
BspANI GGCC 2 cut(s) 812, 926
BspCNI CTCAG 3 cut(s) 25, 45, 862
BspDI ATCGAT 1 cut(s) 450
BspFNI CGCG 1 cut(s) 400
BspLI GGNNCC 1 cut(s) 925
BspT104I TTCGAA 1 cut(s) 203
BspTNI GGTCTC 3 cut(s) 816, 1049, 1070
BsrDI GCAATG 1 cut(s) 567
BssECI CCNNGG 1 cut(s) 549
BssMI GATC 3 cut(s) 451, 492, 612
BssSI CACGAG 1 cut(s) 129
Bst2BI CACGAG 1 cut(s) 129
Bst4CI ACNGT 4 cut(s) 550, 970, 1025, 1072
Bst6I CTCTTC 1 cut(s) 996
BstAPI GCANNNNNTGC 1 cut(s) 979
BstBI TTCGAA 1 cut(s) 203
BstC8I GCNNGC 3 cut(s) 526, 984, 1099
BstDEI CTNAG 3 cut(s) 12, 53, 849
BstDSI CCRYGG 1 cut(s) 549
BstF5I GGATG 1 cut(s) 445
BstFNI CGCG 1 cut(s) 400
BstKTI GATC 3 cut(s) 454, 495, 615
BstMAI GTCTC 5 cut(s) 423, 657, 816, 1049, 1070
BstMBI GATC 3 cut(s) 451, 492, 612
BstMWI GCNNNNNNNGC 2 cut(s) 47, 979
BstSCI CCNGG 3 cut(s) 711, 926, 943
BstSLI GKGCMC 1 cut(s) 1077
BstUI CGCG 1 cut(s) 400
BstV1I GCAGC 2 cut(s) 40, 703
BstXI CCANNNNNNTGG 1 cut(s) 834
Bsu15I ATCGAT 1 cut(s) 450
BsuRI GGCC 2 cut(s) 812, 926
BsuTUI ATCGAT 1 cut(s) 450
BtgI CCRYGG 1 cut(s) 549
BtgZI GCGATG 1 cut(s) 381
BtsCI GGATG 1 cut(s) 445
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 3 cut(s) 106, 975, 1077
Cac8I GCNNGC 3 cut(s) 526, 984, 1099
Cfr13I GGNCC 2 cut(s) 810, 924
ClaI ATCGAT 1 cut(s) 450
Csp6I GTAC 3 cut(s) 334, 546, 897
CviAII CATG 5 cut(s) 244, 773, 791, 979, 1048
CviQI GTAC 3 cut(s) 334, 546, 897
DdeI CTNAG 3 cut(s) 12, 53, 849
DpnI GATC 3 cut(s) 453, 494, 614
DpnII GATC 3 cut(s) 451, 492, 612
DriI GACNNNNNGTC 1 cut(s) 1062
Eam1104I CTCTTC 1 cut(s) 996
Eam1105I GACNNNNNGTC 1 cut(s) 1062
EarI CTCTTC 1 cut(s) 996
Eco31I GGTCTC 3 cut(s) 816, 1049, 1070
Eco57I CTGAAG 1 cut(s) 335
Eco88I CYCGRG 1 cut(s) 337
FaeI CATG 5 cut(s) 247, 776, 794, 982, 1051
FaqI GGGAC 2 cut(s) 764, 960
FatI CATG 5 cut(s) 243, 772, 790, 978, 1047
Fnu4HI GCNGC 2 cut(s) 29, 717
FokI GGATG 1 cut(s) 452
Fsp4HI GCNGC 2 cut(s) 29, 717
FspBI CTAG 3 cut(s) 378, 521, 543
GluI GCNGC 2 cut(s) 29, 717
HaeIII GGCC 2 cut(s) 812, 926
HapII CCGG 3 cut(s) 713, 927, 944
Hin1II CATG 5 cut(s) 247, 776, 794, 982, 1051
HincII GTYRAC 2 cut(s) 82, 121
HindII GTYRAC 2 cut(s) 82, 121
HindIII AAGCTT 1 cut(s) 1013
HinfI GANTC 7 cut(s) 200, 248, 470, 650, 768, 785, 847
HpaII CCGG 3 cut(s) 713, 927, 944
HphI GGTGA 2 cut(s) 15, 244
Hpy166II GTNNAC 5 cut(s) 9, 82, 121, 802, 1075
Hpy188I TCNGA 7 cut(s) 54, 257, 475, 704, 846, 1036, 1106
Hpy188III TCNNGA 5 cut(s) 224, 263, 509, 605, 647
Hpy8I GTNNAC 5 cut(s) 9, 82, 121, 802, 1075
Hpy99I CGWCG 1 cut(s) 644
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 4 cut(s) 550, 970, 1025, 1072
HpyCH4IV ACGT 5 cut(s) 5, 267, 642, 753, 804
HpyCH4V TGCA 5 cut(s) 70, 134, 443, 973, 1075
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 979
HpyF3I CTNAG 3 cut(s) 12, 53, 849
HpySE526I ACGT 5 cut(s) 5, 267, 642, 753, 804
Hsp92II CATG 5 cut(s) 247, 776, 794, 982, 1051
Kzo9I GATC 3 cut(s) 451, 492, 612
LmnI GCTCC 1 cut(s) 724
LpnPI CCDG 8 cut(s) 209, 276, 338, 510, 726, 873, 940, 957
Lsp1109I GCAGC 2 cut(s) 40, 703
LweI GCATC 4 cut(s) 143, 364, 430, 982
MaeI CTAG 3 cut(s) 378, 521, 543
MaeII ACGT 5 cut(s) 5, 267, 642, 753, 804
MaeIII GTNAC 5 cut(s) 142, 239, 294, 570, 1089
MalI GATC 3 cut(s) 453, 494, 614
MboI GATC 3 cut(s) 451, 492, 612
MboII GAAGA 4 cut(s) 73, 271, 334, 983
MhlI GDGCHC 1 cut(s) 1077
MluCI AATT 4 cut(s) 208, 344, 901, 936
MlyI GAGTC 3 cut(s) 659, 779, 841
MmeI TCCRAC 2 cut(s) 481, 869
MnlI CCTC 6 cut(s) 31, 101, 285, 740, 858, 1030
MspA1I CMGCKG 1 cut(s) 16
MspI CCGG 3 cut(s) 713, 927, 944
MspR9I CCNGG 3 cut(s) 713, 928, 945
MvnI CGCG 1 cut(s) 400
MwoI GCNNNNNNNGC 2 cut(s) 47, 979
NciI CCSGG 3 cut(s) 713, 928, 945
NdeII GATC 3 cut(s) 451, 492, 612
NlaIII CATG 5 cut(s) 247, 776, 794, 982, 1051
NlaIV GGNNCC 1 cut(s) 925
NmuCI GTSAC 1 cut(s) 142
NspV TTCGAA 1 cut(s) 203
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PfeI GAWTC 4 cut(s) 200, 248, 470, 768
PfoI TCCNGGA 1 cut(s) 943
PkrI GCNGC 2 cut(s) 30, 718
PleI GAGTC 3 cut(s) 658, 779, 841
PpsI GAGTC 3 cut(s) 658, 779, 841
PspN4I GGNNCC 1 cut(s) 925
PspPI GGNCC 2 cut(s) 810, 924
PvuII CAGCTG 1 cut(s) 16
RsaI GTAC 3 cut(s) 335, 547, 898
RsaNI GTAC 3 cut(s) 334, 546, 897
SatI GCNGC 2 cut(s) 29, 717
Sau3AI GATC 3 cut(s) 451, 492, 612
Sau96I GGNCC 2 cut(s) 810, 924
ScaI AGTACT 1 cut(s) 335
SchI GAGTC 3 cut(s) 659, 779, 841
ScrFI CCNGG 3 cut(s) 713, 928, 945
SduI GDGCHC 1 cut(s) 1077
SfaNI GCATC 4 cut(s) 143, 364, 430, 982
SfuI TTCGAA 1 cut(s) 203
Sse9I AATT 4 cut(s) 208, 344, 901, 936
SsiI CCGC 3 cut(s) 26, 683, 743
SspI AATATT 1 cut(s) 169
SspMI CTAG 3 cut(s) 378, 521, 543
StyD4I CCNGG 3 cut(s) 711, 926, 943
TaaI ACNGT 4 cut(s) 550, 970, 1025, 1072
TaiI ACGT 5 cut(s) 8, 270, 645, 756, 807
TaqI TCGA 7 cut(s) 36, 164, 203, 422, 450, 495, 510
TasI AATT 4 cut(s) 208, 344, 901, 936
TatI WGTACW 1 cut(s) 333
TfiI GAWTC 4 cut(s) 200, 248, 470, 768
TscAI CASTG 3 cut(s) 106, 975, 1077
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 2 cut(s) 28, 716
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 3 cut(s) 74, 341, 483
TspRI CASTG 3 cut(s) 106, 975, 1077
VneI GTGCAC 1 cut(s) 1073
XapI RAATTY 2 cut(s) 208, 936
XspI CTAG 3 cut(s) 378, 521, 543
ZrmI AGTACT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.