Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001080

Physical Location & Seq

Genomic Coordinates Reverse (-)

52196520 .. 52197656

Gene Structure 1137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003739

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCCAGGGAGTTCACGGAGATGGTGCATAATATCATGATAGAGGCTAGAAAACCAAACTTGGGGGACTATTTTCCACTGGTTTTCCTATGGCAGAAGGAGGATAATGACAGTTCTGTTTGTCGCGGGGCCAGACACGTACAACTTCGATCATGTTGCAATGGGCAATGGCAGAGCTTTTACACAACCCTGCATGCAGTGCTGTCAAAAGCACAATTAGAACTTAGTGAAGTAATTGGCAAAGGCAATCCGGTCGAGGAATTGGATATTGCTAGACTACCTTACTTGCAAGCCATTATCAAAGAAACTTTTCGTTTGCTCCAAGGTCCTTTCTTACTTCCCCGAAAAGCCGAGTCAGAAGTAGAAATTGAAGGCTTGACAGTCCCAAAGGGCGCACAAGTGCTTGTGAACGTATGGGCCACTGGCGGGGACCCAAGCCTATTGGATGACCCAAATTCATTCAAGCCGGAGAGGTTCTTGGGGTCTGAAATTGATCTAAGAGGAAGGAATTTTGAGCTTATTCCATTTGGCGCCGGATGTAGAATATGTCCTGGATTGCCATTGGCAATGAGAATGTTGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

195

Amino Acids

21.84

Weight (kDa)

5.84

Isoelectric Point (pI)

47.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	67 - 193	1.4e-36	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33720 AT1G33720 AT1G33720 AT1G33720 AT1G33720 AT1G33730 AT1G33730 AT2G45550 AT2G45560 AT2G45560 AT2G45560 AT2G45570 AT2G45580 AT2G45580 AT2G45580 AT3G61040 AT3G61040
fragaria_vesca	FvH4_5g01070 FvH4_5g01071
malus_domestica	MD13G1112700.v1.1 MD13G1112900.v1.1 MD13G1113000.v1.1 MD16G1116100.v1.1
prunus_persica	Prupe.1G229700_v2.0.a1 Prupe.1G230000_v2.0.a1 Prupe.1G230200_v2.0.a1 Prupe.1G230700_v2.0.a1 Prupe.2G017600_v2.0.a1 Prupe.2G019100_v2.0.a1 Prupe.5G084700_v2.0.a1
pyrus_communis	pycom13g09780 pycom13g09800 pycom13g09820 pycom13g09830 pycom16g09930 pycom16g09940 pycom16g09970
rosa_chinensis	RchiOBHm_Chr7g0200251 RchiOBHm_Chr7g0200291 RchiOBHm_Chr7g0208051
rosa_laevigata	RLG00000003258 RLG00000003739 RLG00000003740
rosa_multiflora	Rmu_sc0002039.1_g000017 Rmu_sc0017949.1_g000001 Rmu_sc0019284.1_g000003
rosa_roxburghii	Rroxscaffold_3G00250850 Rroxscaffold_3G00256180 Rroxscaffold_3G00256190
rosa_rugosa	Rorug07G0058800 Rorug07G0058900
rosa_samantha	Rh7AG184300 Rh7AG234800 Rh7BG187000 Rh7CG194700 Rh7CG250300
rosa_wichuraiana	Rw0G018050 Rw7G016130 Rw7G020050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	530
AccII	CGCG	1 cut(s)	126
AciI	CCGC	2 cut(s)	126, 426
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	454, 508
AcyI	GRCGYC	1 cut(s)	531
AfaI	GTAC	1 cut(s)	141
AfiI	CCNNNNNNNGG	2 cut(s)	62, 426
AflIII	ACRYGT	1 cut(s)	136
AgsI	TTSAA	2 cut(s)	371, 463
AjnI	CCWGG	2 cut(s)	5, 550
AluBI	AGCT	2 cut(s)	177, 517
AluI	AGCT	2 cut(s)	177, 517
AoxI	GGCC	3 cut(s)	3, 129, 417
ApoI	RAATTY	2 cut(s)	454, 508
Asp700I	GAANNNNTTC	1 cut(s)	309
AspLEI	GCGC	2 cut(s)	395, 533
AspS9I	GGNCC	4 cut(s)	129, 326, 417, 430
AvaII	GGWCC	2 cut(s)	326, 430
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	530
BccI	CCATC	1 cut(s)	16
BcgI	CGANNNNNNTGC	4 cut(s)	138, 172, 235, 269
BciT130I	CCWGG	2 cut(s)	7, 552
BfaI	CTAG	2 cut(s)	48, 273
BfoI	RGCGCY	1 cut(s)	534
Bme1390I	CCNGG	2 cut(s)	7, 552
Bme18I	GGWCC	2 cut(s)	326, 430
BmgT120I	GGNCC	4 cut(s)	129, 326, 417, 430
BmiI	GGNNCC	4 cut(s)	130, 431, 432, 532
BmrFI	CCNGG	2 cut(s)	7, 552
BsaAI	YACGTR	1 cut(s)	139
BsaHI	GRCGYC	1 cut(s)	531
BsaJI	CCNNGG	2 cut(s)	6, 322
BsaWI	WCCGGW	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 426
Bse1I	ACTGG	2 cut(s)	84, 427
Bse3DI	GCAATG	3 cut(s)	166, 173, 573
BseBI	CCWGG	2 cut(s)	7, 552
BseDI	CCNNGG	2 cut(s)	6, 322
BseGI	GGATG	2 cut(s)	451, 542
BseLI	CCNNNNNNNGG	2 cut(s)	62, 426
BseMI	GCAATG	3 cut(s)	166, 173, 573
BseNI	ACTGG	2 cut(s)	84, 427
Bsh1236I	CGCG	1 cut(s)	126
Bsh1285I	CGRYCG	1 cut(s)	255
BshFI	GGCC	3 cut(s)	5, 131, 419
BshNI	GGYRCC	1 cut(s)	530
BsiEI	CGRYCG	1 cut(s)	255
BsiSI	CCGG	3 cut(s)	251, 467, 534
BslFI	GGGAC	3 cut(s)	80, 368, 443
BslI	CCNNNNNNNGG	2 cut(s)	62, 426
BsmFI	GGGAC	3 cut(s)	80, 368, 443
BsnI	GGCC	3 cut(s)	5, 131, 419
Bsp143I	GATC	2 cut(s)	149, 493
BspACI	CCGC	2 cut(s)	126, 426
BspANI	GGCC	3 cut(s)	5, 131, 419
BspFNI	CGCG	1 cut(s)	126
BspHI	TCATGA	1 cut(s)	36
BspLI	GGNNCC	4 cut(s)	130, 431, 432, 532
BspT107I	GGYRCC	1 cut(s)	530
BsrDI	GCAATG	3 cut(s)	166, 173, 573
BsrI	ACTGG	2 cut(s)	84, 427
BssECI	CCNNGG	2 cut(s)	6, 322
BssMI	GATC	2 cut(s)	149, 493
BssNI	GRCGYC	1 cut(s)	531
BssT1I	CCWWGG	1 cut(s)	322
Bst2UI	CCWGG	2 cut(s)	7, 552
Bst4CI	ACNGT	2 cut(s)	113, 382
BstACI	GRCGYC	1 cut(s)	531
BstAPI	GCANNNNNTGC	1 cut(s)	199
BstBAI	YACGTR	1 cut(s)	139
BstC8I	GCNNGC	2 cut(s)	195, 291
BstDEI	CTNAG	2 cut(s)	224, 497
BstF5I	GGATG	2 cut(s)	451, 542
BstFNI	CGCG	1 cut(s)	126
BstH2I	RGCGCY	1 cut(s)	534
BstHHI	GCGC	2 cut(s)	395, 533
BstKTI	GATC	2 cut(s)	152, 496
BstMBI	GATC	2 cut(s)	149, 493
BstMCI	CGRYCG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstNI	CCWGG	2 cut(s)	7, 552
BstNSI	RCATGY	1 cut(s)	197
BstSCI	CCNGG	2 cut(s)	5, 550
BstUI	CGCG	1 cut(s)	126
BsuRI	GGCC	3 cut(s)	5, 131, 419
BtsCI	GGATG	2 cut(s)	451, 542
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	3 cut(s)	77, 204, 420
Cac8I	GCNNGC	2 cut(s)	195, 291
CciI	TCATGA	1 cut(s)	36
CfoI	GCGC	2 cut(s)	395, 533
Cfr13I	GGNCC	4 cut(s)	129, 326, 417, 430
Csp6I	GTAC	1 cut(s)	140
CviAII	CATG	3 cut(s)	37, 153, 194
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	2 cut(s)	224, 497
DinI	GGCGCC	1 cut(s)	532
DpnI	GATC	2 cut(s)	151, 495
DpnII	GATC	2 cut(s)	149, 493
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	322
Eco47I	GGWCC	2 cut(s)	326, 430
EcoO109I	RGGNCCY	2 cut(s)	326, 430
EcoRII	CCWGG	2 cut(s)	5, 550
EcoT14I	CCWWGG	1 cut(s)	322
EgeI	GGCGCC	1 cut(s)	532
EheI	GGCGCC	1 cut(s)	532
ErhI	CCWWGG	1 cut(s)	322
FaeI	CATG	3 cut(s)	40, 156, 197
FaiI	YATR	7 cut(s)	30, 38, 91, 154, 195, 415, 547
FaqI	GGGAC	3 cut(s)	80, 368, 443
FatI	CATG	3 cut(s)	36, 152, 193
FauI	CCCGC	2 cut(s)	119, 419
FokI	GGATG	2 cut(s)	458, 549
FspBI	CTAG	2 cut(s)	48, 273
GlaI	GCGC	2 cut(s)	394, 532
HaeII	RGCGCY	1 cut(s)	534
HaeIII	GGCC	3 cut(s)	5, 131, 419
HapII	CCGG	3 cut(s)	251, 467, 534
HhaI	GCGC	2 cut(s)	395, 533
Hin1I	GRCGYC	1 cut(s)	531
Hin1II	CATG	3 cut(s)	40, 156, 197
Hin6I	GCGC	2 cut(s)	393, 531
HinP1I	GCGC	2 cut(s)	393, 531
HinfI	GANTC	1 cut(s)	353
HpaII	CCGG	3 cut(s)	251, 467, 534
Hpy166II	GTNNAC	2 cut(s)	15, 409
Hpy188I	TCNGA	2 cut(s)	358, 487
Hpy188III	TCNNGA	1 cut(s)	37
Hpy8I	GTNNAC	2 cut(s)	15, 409
HpyAV	CCTTC	3 cut(s)	91, 365, 498
HpyCH4III	ACNGT	2 cut(s)	113, 382
HpyCH4IV	ACGT	2 cut(s)	138, 411
HpyCH4V	TGCA	6 cut(s)	28, 159, 193, 197, 289, 580
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpyF3I	CTNAG	2 cut(s)	224, 497
HpySE526I	ACGT	2 cut(s)	138, 411
Hsp92I	GRCGYC	1 cut(s)	531
Hsp92II	CATG	3 cut(s)	40, 156, 197
HspAI	GCGC	2 cut(s)	393, 531
KasI	GGCGCC	1 cut(s)	530
KflI	GGGWCCC	1 cut(s)	430
Kzo9I	GATC	2 cut(s)	149, 493
LmnI	GCTCC	1 cut(s)	324
MaeI	CTAG	2 cut(s)	48, 273
MaeII	ACGT	2 cut(s)	138, 411
MalI	GATC	2 cut(s)	151, 495
MboI	GATC	2 cut(s)	149, 493
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	215, 234, 260, 366, 454, 489, 508
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	531
MlyI	GAGTC	1 cut(s)	362
MnlI	CCTC	5 cut(s)	37, 94, 250, 465, 494
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	309
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	20
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	3 cut(s)	251, 467, 534
MspR9I	CCNGG	2 cut(s)	7, 552
MvaI	CCWGG	2 cut(s)	7, 552
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	199
NarI	GGCGCC	1 cut(s)	531
NdeII	GATC	2 cut(s)	149, 493
NlaIII	CATG	3 cut(s)	40, 156, 197
NlaIV	GGNNCC	4 cut(s)	130, 431, 432, 532
NmeAIII	GCCGAG	1 cut(s)	376
NspI	RCATGY	1 cut(s)	197
PaeI	GCATGC	1 cut(s)	197
PagI	TCATGA	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	309
PfoI	TCCNGGA	1 cut(s)	550
PleI	GAGTC	1 cut(s)	361
PluTI	GGCGCC	1 cut(s)	534
PpsI	GAGTC	1 cut(s)	361
Ppu21I	YACGTR	1 cut(s)	139
PpuMI	RGGWCCY	2 cut(s)	326, 430
Psp5II	RGGWCCY	2 cut(s)	326, 430
Psp6I	CCWGG	2 cut(s)	5, 550
PspGI	CCWGG	2 cut(s)	5, 550
PspN4I	GGNNCC	4 cut(s)	130, 431, 432, 532
PspPI	GGNCC	4 cut(s)	129, 326, 417, 430
PspPPI	RGGWCCY	2 cut(s)	326, 430
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	20
Sau3AI	GATC	2 cut(s)	149, 493
Sau96I	GGNCC	4 cut(s)	129, 326, 417, 430
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	2 cut(s)	7, 552
SetI	ASST	7 cut(s)	141, 179, 283, 328, 414, 476, 519
SfoI	GGCGCC	1 cut(s)	532
SinI	GGWCC	2 cut(s)	326, 430
SmiMI	CAYNNNNRTG	1 cut(s)	20
SphI	GCATGC	1 cut(s)	197
Sse9I	AATT	7 cut(s)	215, 234, 260, 366, 454, 489, 508
SsiI	CCGC	2 cut(s)	126, 426
SspDI	GGCGCC	1 cut(s)	530
SspMI	CTAG	2 cut(s)	48, 273
StyD4I	CCNGG	2 cut(s)	5, 550
StyI	CCWWGG	1 cut(s)	322
TaaI	ACNGT	2 cut(s)	113, 382
TaiI	ACGT	2 cut(s)	141, 414
TaqI	TCGA	2 cut(s)	148, 255
TasI	AATT	7 cut(s)	215, 234, 260, 366, 454, 489, 508
TscAI	CASTG	3 cut(s)	84, 204, 427
TspDTI	ATGAA	1 cut(s)	447
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	3 cut(s)	84, 204, 427
VpaK11BI	GGWCC	2 cut(s)	326, 430
XapI	RAATTY	2 cut(s)	454, 508
XceI	RCATGY	1 cut(s)	197
XmnI	GAANNNNTTC	1 cut(s)	309
XspI	CTAG	2 cut(s)	48, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.