pycom13g09780

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0001080
Physical Location & Seq
Forward (+)
6536710 .. 6538572
1863 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g09780.2

Sequence Viewer

Length: 1275 bp
ATGGAACCAAACGAGGAAATTTTCCGCCACACATTTGTCGTTCAAGCTCTCAGATCCAATCCCCAAAGGCTTCTGCTTCCACCTGGACCAAAGCCATTTCCCATCATTGGCAATCTCTTGGAGCTTGGCAACCAACCCCATCTCTCTCTCACTAACCTTTCAAAACGCTACGGCCCCATTGTTTCTTTGCAACTCGGACAAATAACCACTGTTGTAGTTTCTTCATCAACAGTGGCAAAAGAGGTCCTCCGAACCCACGACCAGTTCTTGTGCAACCGAACCATCCCCGACGCAATCCAAGCTTGCGACCTCCGCCAGGACAGCTTGCCCTGGATACCCGCATCAGACAAATGGAGAAACCTCCGTAAAATATGCAACAACCAATTGTTTGCAACGAAAGTCCTAGACGCCAACCAAGCCAACCGCCACCTGAAAGTGCAGGAGCTCATTGCCGATGTCAATGAAAGCGTTGTGAAAGGTAAGGCAGTAGAAATTGGGAGGGCTGCTTTTAAGACGACACTCAATCTGCTGTCGCGTACTGTTTTCTCGGTTGATTTAGCTGACCCGAGCAGTGAGGTGGGAAGAGAATTCAAGGAGATTGTGTGGGGTTTGATGGAAGAGTCAGGGAAGCCAAACTTGGGGGACTATTTTCCTGTGCTTAGGAAATTTGACCCCCAAGGCATTCGAGGGCGCATGATCAAACATTTTCTCAAGATGGATTCGCTTTTTGATCGACTGATTACGCAAAGGTCAGAACTGAGAAAATCGAATGATTATGTCACAAGCAAGGATATGTTGGATTCTCTCTTGAACATCAGTGAAGTGAGCAATGAGGATATGGACAAGCTTTTGATTGAACATCTGCTTCTGTCTCTATTTGTTGCGGGCACGGATACAACTTCAGCCACGCTGGAATGGGCAATGGCTGAACTACTACGCAACCCTGAAAAGCTGTCGAAAGCGCAAGACGAACTAGATCAAGTCATTGGCAAAGGAAAACCAGTTGAGGAATCGGACATTGCTCGACTCCCTTACTTACAAGCAATAATCAAAGAGACCTTCCGGTTGCATCCGGTTGTACCATTTCTAATCCCTCGAAAAGCCGGAAAAGACGTTGAAATTTGGGGCTATATTGTCCCAAAGGGTGCACAAGTGCTGGTCAATGCATGGGCTATAGGCAGAGACCCTTGCATCTGGGACAACCCGACCTCATTTGCACCGGAGAGGTTTTTGGGATTAGATCGATCAAATCGATGTTTCAGGCAAGAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

425

Amino Acids

47.99

Weight (kDa)

7.65

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 535
AciI CCGC 5 cut(s) 25, 313, 339, 424, 884
AclWI GGATC 1 cut(s) 48
AcsI RAATTY 5 cut(s) 18, 587, 665, 1119, 1268
AcuI CTGAAG 1 cut(s) 885
AcyI GRCGYC 1 cut(s) 408
AfaI GTAC 2 cut(s) 538, 1080
AfiI CCNNNNNNNGG 3 cut(s) 107, 316, 638
AgsI TTSAA 6 cut(s) 44, 162, 592, 811, 857, 1118
AjnI CCWGG 3 cut(s) 82, 315, 329
AjuI GAANNNNNNNTTGG 2 cut(s) 620, 652
AluBI AGCT 8 cut(s) 47, 124, 302, 324, 445, 560, 847, 952
AluI AGCT 8 cut(s) 47, 124, 302, 324, 445, 560, 847, 952
Alw21I GWGCWC 2 cut(s) 447, 1150
Alw26I GTCTC 3 cut(s) 876, 1049, 1176
Alw44I GTGCAC 1 cut(s) 1146
AlwI GGATC 1 cut(s) 48
Ama87I CYCGRG 1 cut(s) 565
AoxI GGCC 1 cut(s) 172
ApaLI GTGCAC 1 cut(s) 1146
ApeKI GCWGC 1 cut(s) 503
ApoI RAATTY 5 cut(s) 18, 587, 665, 1119, 1268
AspLEI GCGC 2 cut(s) 693, 964
AspS9I GGNCC 3 cut(s) 86, 173, 244
AvaI CYCGRG 1 cut(s) 565
AvaII GGWCC 2 cut(s) 86, 244
BaeGI GKGCMC 2 cut(s) 890, 1150
BanII GRGCYC 1 cut(s) 447
Bbv12I GWGCWC 2 cut(s) 447, 1150
BbvI GCAGC 1 cut(s) 490
BccI CCATC 5 cut(s) 110, 147, 290, 607, 709
BceAI ACGGC 1 cut(s) 187
BciT130I CCWGG 3 cut(s) 84, 317, 331
BciVI GTATCC 2 cut(s) 327, 886
BclI TGATCA 1 cut(s) 696
BcoDI GTCTC 3 cut(s) 876, 1049, 1176
BfaI CTAG 2 cut(s) 404, 974
BfmI CTRYAG 1 cut(s) 1173
BfuI GTATCC 2 cut(s) 327, 886
BisI GCNGC 1 cut(s) 504
BlsI GCNGC 1 cut(s) 505
Bme1390I CCNGG 3 cut(s) 84, 317, 331
Bme18I GGWCC 2 cut(s) 86, 244
BmeT110I CYCGRG 1 cut(s) 565
BmgT120I GGNCC 3 cut(s) 86, 173, 244
BmiI GGNNCC 2 cut(s) 6, 175
BmrFI CCNGG 3 cut(s) 84, 317, 331
BmsI GCATC 3 cut(s) 350, 1078, 1200
Bpu10I CCTNAGC 1 cut(s) 659
BpuEI CTTGAG 1 cut(s) 695
Bsa29I ATCGAT 2 cut(s) 1243, 1252
BsaHI GRCGYC 1 cut(s) 408
BsaI GGTCTC 2 cut(s) 1049, 1176
BsaJI CCNNGG 2 cut(s) 329, 676
BsaWI WCCGGW 3 cut(s) 1062, 1072, 1219
BsaXI ACNNNNNCTCC 2 cut(s) 587, 617
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 316, 638
Bse1I ACTGG 2 cut(s) 262, 1001
Bse3DI GCAATG 4 cut(s) 447, 835, 927, 1017
BseBI CCWGG 3 cut(s) 84, 317, 331
BseCI ATCGAT 2 cut(s) 1243, 1252
BseDI CCNNGG 2 cut(s) 329, 676
BseGI GGATG 2 cut(s) 282, 1069
BseLI CCNNNNNNNGG 3 cut(s) 107, 316, 638
BseMI GCAATG 4 cut(s) 447, 835, 927, 1017
BseMII CTCAG 2 cut(s) 64, 749
BseNI ACTGG 2 cut(s) 262, 1001
BseSI GKGCMC 2 cut(s) 890, 1150
BseXI GCAGC 1 cut(s) 490
BsgI GTGCAG 1 cut(s) 458
Bsh1236I CGCG 1 cut(s) 535
BshFI GGCC 1 cut(s) 174
BshVI ATCGAT 2 cut(s) 1243, 1252
BsiHKAI GWGCWC 2 cut(s) 447, 1150
BsiHKCI CYCGRG 1 cut(s) 565
BsiSI CCGG 4 cut(s) 1063, 1073, 1104, 1220
BslFI GGGAC 3 cut(s) 656, 1121, 1211
BslI CCNNNNNNNGG 3 cut(s) 107, 316, 638
BsmAI GTCTC 3 cut(s) 876, 1049, 1176
BsmFI GGGAC 3 cut(s) 656, 1121, 1211
BsmI GAATGC 1 cut(s) 681
BsnI GGCC 1 cut(s) 174
Bso31I GGTCTC 2 cut(s) 1049, 1176
BsoBI CYCGRG 1 cut(s) 565
Bsp1286I GDGCHC 3 cut(s) 447, 890, 1150
Bsp143I GATC 6 cut(s) 53, 696, 730, 976, 1240, 1244
BspACI CCGC 5 cut(s) 25, 313, 339, 424, 884
BspANI GGCC 1 cut(s) 174
BspCNI CTCAG 2 cut(s) 63, 750
BspDI ATCGAT 2 cut(s) 1243, 1252
BspFNI CGCG 1 cut(s) 535
BspLI GGNNCC 2 cut(s) 6, 175
BspPI GGATC 1 cut(s) 48
BspTNI GGTCTC 2 cut(s) 1049, 1176
BsrDI GCAATG 4 cut(s) 447, 835, 927, 1017
BsrI ACTGG 2 cut(s) 262, 1001
BssECI CCNNGG 2 cut(s) 329, 676
BssMI GATC 6 cut(s) 53, 696, 730, 976, 1240, 1244
BssNI GRCGYC 1 cut(s) 408
BssT1I CCWWGG 1 cut(s) 676
Bst2UI CCWGG 3 cut(s) 84, 317, 331
Bst4CI ACNGT 3 cut(s) 211, 232, 541
Bst6I CTCTTC 2 cut(s) 577, 612
BstACI GRCGYC 1 cut(s) 408
BstC8I GCNNGC 3 cut(s) 304, 326, 886
BstDEI CTNAG 3 cut(s) 50, 659, 758
BstENI CCTNNNNNAGG 1 cut(s) 314
BstF5I GGATG 2 cut(s) 282, 1069
BstFNI CGCG 1 cut(s) 535
BstHHI GCGC 2 cut(s) 693, 964
BstKTI GATC 6 cut(s) 56, 699, 733, 979, 1243, 1247
BstMAI GTCTC 3 cut(s) 876, 1049, 1176
BstMBI GATC 6 cut(s) 53, 696, 730, 976, 1240, 1244
BstMWI GCNNNNNNNGC 4 cut(s) 299, 312, 321, 416
BstNI CCWGG 3 cut(s) 84, 317, 331
BstSCI CCNGG 3 cut(s) 82, 315, 329
BstSFI CTRYAG 1 cut(s) 1173
BstSLI GKGCMC 2 cut(s) 890, 1150
BstUI CGCG 1 cut(s) 535
BstV1I GCAGC 1 cut(s) 490
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
Bsu15I ATCGAT 2 cut(s) 1243, 1252
BsuI GTATCC 2 cut(s) 327, 886
BsuRI GGCC 1 cut(s) 174
BsuTUI ATCGAT 2 cut(s) 1243, 1252
BtsCI GGATG 2 cut(s) 282, 1069
BtsI GCAGTG 1 cut(s) 577
BtsIMutI CAGTG 4 cut(s) 207, 237, 577, 823
Cac8I GCNNGC 3 cut(s) 304, 326, 886
CfoI GCGC 2 cut(s) 693, 964
Cfr13I GGNCC 3 cut(s) 86, 173, 244
ClaI ATCGAT 2 cut(s) 1243, 1252
CseI GACGC 2 cut(s) 299, 416
Csp6I GTAC 2 cut(s) 537, 1079
CviAII CATG 2 cut(s) 694, 1167
CviQI GTAC 2 cut(s) 537, 1079
DdeI CTNAG 3 cut(s) 50, 659, 758
DpnI GATC 6 cut(s) 55, 698, 732, 978, 1242, 1246
DpnII GATC 6 cut(s) 53, 696, 730, 976, 1240, 1244
Eam1104I CTCTTC 2 cut(s) 577, 612
EarI CTCTTC 2 cut(s) 577, 612
EciI GGCGGA 2 cut(s) 14, 302
Ecl136II GAGCTC 1 cut(s) 445
Eco130I CCWWGG 1 cut(s) 676
Eco24I GRGCYC 1 cut(s) 447
Eco31I GGTCTC 2 cut(s) 1049, 1176
Eco47I GGWCC 2 cut(s) 86, 244
Eco53kI GAGCTC 1 cut(s) 445
Eco57I CTGAAG 1 cut(s) 885
Eco88I CYCGRG 1 cut(s) 565
EcoICRI GAGCTC 1 cut(s) 445
EcoNI CCTNNNNNAGG 1 cut(s) 314
EcoO109I RGGNCCY 1 cut(s) 244
EcoRI GAATTC 1 cut(s) 587
EcoRII CCWGG 3 cut(s) 82, 315, 329
EcoT14I CCWWGG 1 cut(s) 676
EcoT22I ATGCAT 1 cut(s) 1168
EcoT38I GRGCYC 1 cut(s) 447
ErhI CCWWGG 1 cut(s) 676
FaeI CATG 2 cut(s) 697, 1170
FaiI YATR 8 cut(s) 373, 695, 777, 794, 839, 1131, 1168, 1175
FalI AAGNNNNNCTT 2 cut(s) 620, 652
FaqI GGGAC 3 cut(s) 656, 1121, 1211
FatI CATG 2 cut(s) 693, 1166
FauI CCCGC 2 cut(s) 346, 877
FbaI TGATCA 1 cut(s) 696
Fnu4HI GCNGC 1 cut(s) 504
FokI GGATG 2 cut(s) 269, 1056
FriOI GRGCYC 1 cut(s) 447
Fsp4HI GCNGC 1 cut(s) 504
FspBI CTAG 2 cut(s) 404, 974
GlaI GCGC 2 cut(s) 692, 963
GluI GCNGC 1 cut(s) 504
HaeIII GGCC 1 cut(s) 174
HapII CCGG 4 cut(s) 1063, 1073, 1104, 1220
HgaI GACGC 2 cut(s) 299, 416
HhaI GCGC 2 cut(s) 693, 964
Hin1I GRCGYC 1 cut(s) 408
Hin1II CATG 2 cut(s) 697, 1170
Hin6I GCGC 2 cut(s) 691, 962
HinP1I GCGC 2 cut(s) 691, 962
HindIII AAGCTT 2 cut(s) 300, 845
HinfI GANTC 5 cut(s) 620, 719, 800, 1010, 1026
HpaII CCGG 4 cut(s) 1063, 1073, 1104, 1220
Hpy166II GTNNAC 1 cut(s) 1148
Hpy188I TCNGA 6 cut(s) 53, 197, 251, 346, 754, 1015
Hpy188III TCNNGA 2 cut(s) 712, 808
Hpy8I GTNNAC 1 cut(s) 1148
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 1 cut(s) 1069
HpyCH4III ACNGT 3 cut(s) 211, 232, 541
HpyCH4IV ACGT 1 cut(s) 1113
HpyF10VI GCNNNNNNNGC 4 cut(s) 299, 312, 321, 416
HpyF3I CTNAG 3 cut(s) 50, 659, 758
HpySE526I ACGT 1 cut(s) 1113
Hsp92I GRCGYC 1 cut(s) 408
Hsp92II CATG 2 cut(s) 697, 1170
HspAI GCGC 2 cut(s) 691, 962
Ksp22I TGATCA 1 cut(s) 696
Kzo9I GATC 6 cut(s) 53, 696, 730, 976, 1240, 1244
LmnI GCTCC 2 cut(s) 121, 442
Lsp1109I GCAGC 1 cut(s) 490
LweI GCATC 3 cut(s) 350, 1078, 1200
MaeI CTAG 2 cut(s) 404, 974
MaeII ACGT 1 cut(s) 1113
MaeIII GTNAC 1 cut(s) 778
MalI GATC 6 cut(s) 55, 698, 732, 978, 1242, 1246
MboI GATC 6 cut(s) 53, 696, 730, 976, 1240, 1244
MboII GAAGA 3 cut(s) 213, 594, 629
MfeI CAATTG 1 cut(s) 383
MflI RGATCY 1 cut(s) 53
MhlI GDGCHC 3 cut(s) 447, 890, 1150
MluCI AATT 7 cut(s) 18, 383, 492, 587, 665, 1119, 1268
MlyI GAGTC 2 cut(s) 629, 1020
MmeI TCCRAC 1 cut(s) 777
Mph1103I ATGCAT 1 cut(s) 1168
MseI TTAA 1 cut(s) 510
MspI CCGG 4 cut(s) 1063, 1073, 1104, 1220
MspR9I CCNGG 3 cut(s) 84, 317, 331
MunI CAATTG 1 cut(s) 383
Mva1269I GAATGC 1 cut(s) 681
MvaI CCWGG 3 cut(s) 84, 317, 331
MvnI CGCG 1 cut(s) 535
MwoI GCNNNNNNNGC 4 cut(s) 299, 312, 321, 416
NdeII GATC 6 cut(s) 53, 696, 730, 976, 1240, 1244
NlaIII CATG 2 cut(s) 697, 1170
NlaIV GGNNCC 2 cut(s) 6, 175
NmuCI GTSAC 1 cut(s) 778
NsiI ATGCAT 1 cut(s) 1168
PcsI WCGNNNNNNNCGW 1 cut(s) 1249
PctI GAATGC 1 cut(s) 681
PfeI GAWTC 3 cut(s) 719, 800, 1010
PkrI GCNGC 1 cut(s) 505
PleI GAGTC 2 cut(s) 628, 1020
PpsI GAGTC 2 cut(s) 628, 1020
PpuMI RGGWCCY 1 cut(s) 244
Psp124BI GAGCTC 1 cut(s) 447
Psp5II RGGWCCY 1 cut(s) 244
Psp6I CCWGG 3 cut(s) 82, 315, 329
PspGI CCWGG 3 cut(s) 82, 315, 329
PspN4I GGNNCC 2 cut(s) 6, 175
PspPI GGNCC 3 cut(s) 86, 173, 244
PspPPI RGGWCCY 1 cut(s) 244
PsuI RGATCY 1 cut(s) 53
RsaI GTAC 2 cut(s) 538, 1080
RsaNI GTAC 2 cut(s) 537, 1079
SacI GAGCTC 1 cut(s) 447
SaqAI TTAA 1 cut(s) 510
SatI GCNGC 1 cut(s) 504
Sau3AI GATC 6 cut(s) 53, 696, 730, 976, 1240, 1244
Sau96I GGNCC 3 cut(s) 86, 173, 244
SchI GAGTC 2 cut(s) 629, 1020
ScrFI CCNGG 3 cut(s) 84, 317, 331
SduI GDGCHC 3 cut(s) 447, 890, 1150
SfaNI GCATC 3 cut(s) 350, 1078, 1200
SfcI CTRYAG 1 cut(s) 1173
SinI GGWCC 2 cut(s) 86, 244
SmlI CTYRAG 1 cut(s) 710
SmoI CTYRAG 1 cut(s) 710
Sse9I AATT 7 cut(s) 18, 383, 492, 587, 665, 1119, 1268
SsiI CCGC 5 cut(s) 25, 313, 339, 424, 884
SspMI CTAG 2 cut(s) 404, 974
SstI GAGCTC 1 cut(s) 447
StyD4I CCNGG 3 cut(s) 82, 315, 329
StyI CCWWGG 1 cut(s) 676
TaaI ACNGT 3 cut(s) 211, 232, 541
TaiI ACGT 1 cut(s) 1116
TaqI TCGA 8 cut(s) 685, 733, 767, 956, 1024, 1096, 1243, 1252
TasI AATT 7 cut(s) 18, 383, 492, 587, 665, 1119, 1268
TfiI GAWTC 3 cut(s) 719, 800, 1010
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TscAI CASTG 4 cut(s) 214, 237, 577, 823
TseFI GTSAC 1 cut(s) 778
TseI GCWGC 1 cut(s) 503
Tsp45I GTSAC 1 cut(s) 778
TspDTI ATGAA 2 cut(s) 213, 477
TspGWI ACGGA 2 cut(s) 353, 905
TspRI CASTG 4 cut(s) 214, 237, 577, 823
VneI GTGCAC 1 cut(s) 1146
VpaK11BI GGWCC 2 cut(s) 86, 244
XagI CCTNNNNNAGG 1 cut(s) 314
XapI RAATTY 5 cut(s) 18, 587, 665, 1119, 1268
XspI CTAG 2 cut(s) 404, 974
Zsp2I ATGCAT 1 cut(s) 1168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.