Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001080

Physical Location & Seq

Genomic Coordinates Reverse (-)

50575513 .. 50576776

Gene Structure 1264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00256180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTTGCAATGGGCAATGGCAGAGCTTTTACACAACCCTGCAGTACTGTCAAAAGCACAATTGGAACTTAGTGAAGTAATTGGCAAAGGCAATCCGGTCGAGGAGTTGGATATTGCTAGACTACCTTACTTGCAAGCCATTATCAAAGAAACTTTTCGTTTGCACCAAGGTCCTTTCTTACTTCCCCGAAAAGCCGAGTCAGAAGTAGAAATTGAAGGCTTGACAGTCCCAAAAGGCGCACAAGTGCTTGTGAACGTATGGGCCATTGGCGGGGACCCAAGCCTATGGGATGATCCAAATTCATTCAAGCCGGAGAGGTTCTTGGGGTCTGAAATTGATGTAAGAGGAAGGAATTTTGAGCTTATTCCATTTGGCGCATACCTGGATTGCCACTGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

133

Amino Acids

14.98

Weight (kDa)

4.89

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 126	8.6e-39	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33720 AT1G33720 AT1G33720 AT1G33720 AT1G33720 AT1G33730 AT1G33730 AT2G45550 AT2G45560 AT2G45560 AT2G45560 AT2G45570 AT2G45580 AT2G45580 AT2G45580 AT3G61040 AT3G61040
fragaria_vesca	FvH4_5g01070 FvH4_5g01071
malus_domestica	MD13G1112700.v1.1 MD13G1112900.v1.1 MD13G1113000.v1.1 MD16G1116100.v1.1
prunus_persica	Prupe.1G229700_v2.0.a1 Prupe.1G230000_v2.0.a1 Prupe.1G230200_v2.0.a1 Prupe.1G230700_v2.0.a1 Prupe.2G017600_v2.0.a1 Prupe.2G019100_v2.0.a1 Prupe.5G084700_v2.0.a1
pyrus_communis	pycom13g09780 pycom13g09800 pycom13g09820 pycom13g09830 pycom16g09930 pycom16g09940 pycom16g09970
rosa_chinensis	RchiOBHm_Chr7g0200251 RchiOBHm_Chr7g0200291 RchiOBHm_Chr7g0208051
rosa_laevigata	RLG00000003258 RLG00000003739 RLG00000003740
rosa_multiflora	Rmu_sc0002039.1_g000017 Rmu_sc0017949.1_g000001 Rmu_sc0019284.1_g000003
rosa_roxburghii	Rroxscaffold_3G00250850 Rroxscaffold_3G00256180 Rroxscaffold_3G00256190
rosa_rugosa	Rorug07G0058800 Rorug07G0058900
rosa_samantha	Rh7AG184300 Rh7AG234800 Rh7BG187000 Rh7CG194700 Rh7CG250300
rosa_wichuraiana	Rw0G018050 Rw7G016130 Rw7G020050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	270
AclWI	GGATC	1 cut(s)	287
AcsI	RAATTY	2 cut(s)	298, 352
AfaI	GTAC	1 cut(s)	45
AfiI	CCNNNNNNNGG	1 cut(s)	270
AgsI	TTSAA	2 cut(s)	215, 307
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	2 cut(s)	25, 361
AluI	AGCT	2 cut(s)	25, 361
AlwI	GGATC	1 cut(s)	287
AoxI	GGCC	1 cut(s)	261
ApoI	RAATTY	2 cut(s)	298, 352
Asp700I	GAANNNNTTC	1 cut(s)	153
AspLEI	GCGC	2 cut(s)	239, 377
AspS9I	GGNCC	3 cut(s)	170, 261, 274
AvaII	GGWCC	2 cut(s)	170, 274
BcgI	CGANNNNNNTGC	2 cut(s)	79, 113
BciT130I	CCWGG	1 cut(s)	383
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	39
BmcAI	AGTACT	1 cut(s)	45
Bme1390I	CCNGG	1 cut(s)	383
Bme18I	GGWCC	2 cut(s)	170, 274
BmgT120I	GGNCC	3 cut(s)	170, 261, 274
BmiI	GGNNCC	2 cut(s)	275, 276
BmrFI	CCNGG	1 cut(s)	383
BsaJI	CCNNGG	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	1 cut(s)	270
Bse1I	ACTGG	1 cut(s)	398
Bse3DI	GCAATG	2 cut(s)	14, 21
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	1 cut(s)	270
BseMI	GCAATG	2 cut(s)	14, 21
BseNI	ACTGG	1 cut(s)	398
BseRI	GAGGAG	1 cut(s)	116
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	263
BsiEI	CGRYCG	1 cut(s)	99
BsiSI	CCGG	2 cut(s)	95, 311
BslFI	GGGAC	2 cut(s)	212, 287
BslI	CCNNNNNNNGG	1 cut(s)	270
BsmFI	GGGAC	2 cut(s)	212, 287
BsnI	GGCC	1 cut(s)	263
Bsp143I	GATC	1 cut(s)	292
BspACI	CCGC	1 cut(s)	270
BspANI	GGCC	1 cut(s)	263
BspLI	GGNNCC	2 cut(s)	275, 276
BspMAI	CTGCAG	1 cut(s)	43
BspPI	GGATC	1 cut(s)	287
BsrDI	GCAATG	2 cut(s)	14, 21
BsrI	ACTGG	1 cut(s)	398
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	1 cut(s)	292
BssT1I	CCWWGG	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	2 cut(s)	48, 226
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	295
BstHHI	GCGC	2 cut(s)	239, 377
BstKTI	GATC	1 cut(s)	295
BstMBI	GATC	1 cut(s)	292
BstMCI	CGRYCG	1 cut(s)	99
BstNI	CCWGG	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	381
BstSFI	CTRYAG	1 cut(s)	39
BstXI	CCANNNNNNTGG	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	391
Cac8I	GCNNGC	1 cut(s)	135
CfoI	GCGC	2 cut(s)	239, 377
Cfr13I	GGNCC	3 cut(s)	170, 261, 274
Csp6I	GTAC	1 cut(s)	44
CviJI	RGCY	8 cut(s)	25, 137, 194, 219, 263, 282, 310, 361
CviKI_1	RGCY	8 cut(s)	25, 137, 194, 219, 263, 282, 310, 361
CviQI	GTAC	1 cut(s)	44
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	166
Eco47I	GGWCC	2 cut(s)	170, 274
EcoO109I	RGGNCCY	2 cut(s)	170, 274
EcoRII	CCWGG	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
FaiI	YATR	3 cut(s)	259, 286, 379
FaqI	GGGAC	2 cut(s)	212, 287
FauI	CCCGC	1 cut(s)	263
FokI	GGATG	1 cut(s)	302
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	2 cut(s)	238, 376
HaeIII	GGCC	1 cut(s)	263
HapII	CCGG	2 cut(s)	95, 311
HhaI	GCGC	2 cut(s)	239, 377
Hin6I	GCGC	2 cut(s)	237, 375
HinP1I	GCGC	2 cut(s)	237, 375
HinfI	GANTC	1 cut(s)	197
HpaII	CCGG	2 cut(s)	95, 311
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	2 cut(s)	202, 331
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	2 cut(s)	209, 342
HpyCH4III	ACNGT	2 cut(s)	48, 226
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	4 cut(s)	7, 41, 133, 163
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	1 cut(s)	255
HspAI	GCGC	2 cut(s)	237, 375
KflI	GGGWCCC	1 cut(s)	274
Kzo9I	GATC	1 cut(s)	292
LpnPI	CCDG	6 cut(s)	51, 108, 324, 368, 379, 395
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	255
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MfeI	CAATTG	1 cut(s)	59
MluCI	AATT	6 cut(s)	59, 78, 210, 298, 333, 352
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	3 cut(s)	94, 309, 338
MroXI	GAANNNNTTC	1 cut(s)	153
MspI	CCGG	2 cut(s)	95, 311
MspR9I	CCNGG	1 cut(s)	383
MunI	CAATTG	1 cut(s)	59
MvaI	CCWGG	1 cut(s)	383
NdeII	GATC	1 cut(s)	292
NlaIV	GGNNCC	2 cut(s)	275, 276
NmeAIII	GCCGAG	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	153
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PpuMI	RGGWCCY	2 cut(s)	170, 274
Psp5II	RGGWCCY	2 cut(s)	170, 274
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	2 cut(s)	275, 276
PspPI	GGNCC	3 cut(s)	170, 261, 274
PspPPI	RGGWCCY	2 cut(s)	170, 274
PstI	CTGCAG	1 cut(s)	43
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
Sau3AI	GATC	1 cut(s)	292
Sau96I	GGNCC	3 cut(s)	170, 261, 274
ScaI	AGTACT	1 cut(s)	45
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	383
SetI	ASST	7 cut(s)	27, 127, 172, 258, 320, 363, 384
SfcI	CTRYAG	1 cut(s)	39
SinI	GGWCC	2 cut(s)	170, 274
Sse9I	AATT	6 cut(s)	59, 78, 210, 298, 333, 352
SsiI	CCGC	1 cut(s)	270
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	2 cut(s)	48, 226
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	1 cut(s)	99
TasI	AATT	6 cut(s)	59, 78, 210, 298, 333, 352
TatI	WGTACW	1 cut(s)	43
TscAI	CASTG	1 cut(s)	398
TspDTI	ATGAA	1 cut(s)	291
TspRI	CASTG	1 cut(s)	398
VpaK11BI	GGWCC	2 cut(s)	170, 274
XapI	RAATTY	2 cut(s)	298, 352
XmnI	GAANNNNTTC	1 cut(s)	153
XspI	CTAG	1 cut(s)	117
ZrmI	AGTACT	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.