RLG00000003740

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001080
Physical Location & Seq
Reverse (-)
52217866 .. 52219714
1849 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003740

Sequence Viewer

Length: 1500 bp
ATGGACTTCTGGAGTGCTTTCGTTTACCTTATCCTCACCTGGACATTGATCCAAGCCCTCCTCTACTCAATTTCAAGAGCCAAAAACACCTCCAAAAAGCTTCCACCAGGTCCAAAACCGCTTCCAATCCTCGGAAACCTTCTCCTACTTGGTGACAAACCTCACAAATCTCTTGCCAAACTTGCCCAAATTCATGGCCCTTTAATGTCCCTAAAACTTGGACAAGTAACGTCCATAGTTGTTTCTTCATCAGCCATGGCCAAACAAGTCATGCAAACCCATGATCAATTCTTCTCCAACCGAACAATCCCCGATTCCATTCGAGCCCTTGATCACCACACTGTTGGCTTGCCGTGGATCCCAGTCTCACCCCTCTGGAGAAACCTTAGAAAAATATGCAACACTCAGCTATTTGCCAACAAGATGCTTGATGCTAACGAAAACCTGCGACGCAAAAAAGTGGAGCAACTCCTTGAATCAGTCCATAAAAGCAGCCTGAGTGGGCAAGCAGTTGACTTTGGTAGGGTAGCTTTTACCGCAACACTCAATTTGCTGTCTAATACAATTTTTTCGATTGATTTAGCAGACCCGAATTCCCAAATGGCTAGGGAGTTCAAGGAGATGGTGCATAATATTATGATCGAGGCTGGAAAACCAAACTTGGGGAACTGTTTTCCTGTGCTTAGGAAGATTGATCCTAATGGCAGAAGAAGGAGAATGACAAAGTATTTTGGAAAGATAATAGATTTAGTTGAAACAATAGTTCAGCAGAGGTTGAAGCTGAGAAAATCGACTGAATCTGCAACAAAGAACGATGTGTTGGATACCCTTCTCACTATTACAGAGGAAAACAGTGAGGAGCTCAACAAAAATCAACTTTATCATTTCATACTGGTTCTTTTTGTTGCAGGGTCAGACACAACTTCATCCACATTCCAATGGGCAATGGCAGAGCTCTTACACAACCCTGAAGTTCTCTCAAAAGCACAATTAGAGCTTAACGAAGTAATTGGCAAAGGCAATCCTGTTGAGGAATCAGACATTACTAGACTACCTTACTTGCAAGCCATTATTAAAGAAACATTTCGTATGCACCCTGCAGTTCCTTTGTTACTTCCCCGAAAAACTGAATCAGATGTAGAGATTGAAGGCTCCACAGTCCCGAAGGGTGCACAAGTGCTTGTTAACGCATGGGCCATTGGCAGAGACCCAAGTATATGGGATGACCCGGATTCATTCAAGCCGGAGAGATTTTTGGGGTCTGAACTTGATGTTAGAGGCCGGAATTTTGAACTTATTCCATTTGGCGCCGGCAGGAGAATATGTCCGGGCTTACCATTGGCAATCAGAATGTTGCACTTAATGTTGGGTTCTCTTATCCATTCCTTTGTTTGGAAGCTTGAAGATGGAGTTACACCAGAGACTATGAACATGGATGAAAAGTTTGGACTCACCCTAGAGATGGCTAAACCCTTGAGAGCTATCCCTATCCCTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

500

Amino Acids

56.11

Weight (kDa)

9.12

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 35 - 484 1.6e-109 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 453
AccB1I GGYRCC 1 cut(s) 1307
AciI CCGC 2 cut(s) 119, 537
AclWI GGATC 4 cut(s) 43, 352, 365, 689
AcoI YGGCCR 1 cut(s) 258
AcsI RAATTY 3 cut(s) 189, 592, 1285
AcuI CTGAAG 1 cut(s) 990
AcyI GRCGYC 1 cut(s) 1308
AfiI CCNNNNNNNGG 4 cut(s) 131, 662, 1392, 1462
AgsI TTSAA 9 cut(s) 75, 476, 616, 755, 778, 1148, 1240, 1292, 1403
AjnI CCWGG 2 cut(s) 38, 106
AjuI GAANNNNNNNTTGG 2 cut(s) 803, 835
AluBI AGCT 9 cut(s) 100, 409, 530, 781, 862, 955, 997, 1399, 1481
AluI AGCT 9 cut(s) 100, 409, 530, 781, 862, 955, 997, 1399, 1481
Alw21I GWGCWC 3 cut(s) 864, 957, 1174
Alw26I GTCTC 3 cut(s) 370, 1200, 1415
Alw44I GTGCAC 1 cut(s) 1170
AlwI GGATC 4 cut(s) 43, 352, 365, 689
AoxI GGCC 4 cut(s) 196, 258, 1194, 1279
ApaLI GTGCAC 1 cut(s) 1170
ApeKI GCWGC 1 cut(s) 492
ApoI RAATTY 3 cut(s) 189, 592, 1285
Asp700I GAANNNNTTC 2 cut(s) 1083, 1296
AspLEI GCGC 1 cut(s) 1310
AspS9I GGNCC 3 cut(s) 110, 197, 1194
AsuC2I CCSGG 2 cut(s) 1229, 1329
AsuHPI GGTGA 5 cut(s) 28, 164, 326, 360, 1444
AvaII GGWCC 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 1174
BalI TGGCCA 1 cut(s) 260
BamHI GGATCC 1 cut(s) 357
BanI GGYRCC 1 cut(s) 1307
BanII GRGCYC 3 cut(s) 328, 864, 957
Bbv12I GWGCWC 3 cut(s) 864, 957, 1174
BbvI GCAGC 1 cut(s) 504
BccI CCATC 3 cut(s) 616, 1400, 1456
BceAI ACGGC 1 cut(s) 337
BciT130I CCWGG 2 cut(s) 40, 108
BciVI GTATCC 1 cut(s) 817
BclI TGATCA 2 cut(s) 283, 331
BcnI CCSGG 2 cut(s) 1229, 1329
BcoDI GTCTC 3 cut(s) 370, 1200, 1415
BfaI CTAG 3 cut(s) 606, 1047, 1457
BfmI CTRYAG 1 cut(s) 1098
BfoI RGCGCY 1 cut(s) 1311
BfuAI ACCTGC 1 cut(s) 453
BfuI GTATCC 1 cut(s) 817
BisI GCNGC 1 cut(s) 493
BlsI GCNGC 1 cut(s) 494
Bme1390I CCNGG 4 cut(s) 40, 108, 1229, 1329
Bme18I GGWCC 1 cut(s) 110
BmgT120I GGNCC 3 cut(s) 110, 197, 1194
BmiI GGNNCC 3 cut(s) 359, 1153, 1309
BmrFI CCNGG 4 cut(s) 40, 108, 1229, 1329
BmrI ACTGGG 1 cut(s) 356
BmsI GCATC 2 cut(s) 414, 421
BmuI ACTGGG 1 cut(s) 356
BpmI CTGGAG 2 cut(s) 31, 397
Bpu10I CCTNAGC 1 cut(s) 683
BpuEI CTTGAG 1 cut(s) 1495
BpuMI CCSGG 2 cut(s) 1229, 1329
BsaHI GRCGYC 1 cut(s) 1308
BsaI GGTCTC 1 cut(s) 1200
BsaJI CCNNGG 3 cut(s) 130, 255, 353
BsaXI ACNNNNNCTCC 2 cut(s) 1309, 1339
Bsc4I CCNNNNNNNGG 4 cut(s) 131, 662, 1392, 1462
Bse118I RCCGGY 1 cut(s) 1310
Bse1I ACTGG 2 cut(s) 362, 897
Bse3DI GCAATG 1 cut(s) 951
BseBI CCWGG 2 cut(s) 40, 108
BseDI CCNNGG 3 cut(s) 130, 255, 353
BseGI GGATG 3 cut(s) 926, 1228, 1441
BseLI CCNNNNNNNGG 4 cut(s) 131, 662, 1392, 1462
BseMI GCAATG 1 cut(s) 951
BseMII CTCAG 3 cut(s) 419, 488, 773
BseNI ACTGG 2 cut(s) 362, 897
BseRI GAGGAG 2 cut(s) 50, 872
BseSI GKGCMC 1 cut(s) 1174
BseXI GCAGC 1 cut(s) 504
BshFI GGCC 4 cut(s) 198, 260, 1196, 1281
BshNI GGYRCC 1 cut(s) 1307
BsiHKAI GWGCWC 3 cut(s) 864, 957, 1174
BsiSI CCGG 5 cut(s) 1229, 1244, 1282, 1311, 1328
BslFI GGGAC 2 cut(s) 193, 1145
BslI CCNNNNNNNGG 4 cut(s) 131, 662, 1392, 1462
BsmAI GTCTC 3 cut(s) 370, 1200, 1415
BsmFI GGGAC 2 cut(s) 193, 1145
BsnI GGCC 4 cut(s) 198, 260, 1196, 1281
Bso31I GGTCTC 1 cut(s) 1200
Bsp1286I GDGCHC 4 cut(s) 328, 864, 957, 1174
Bsp143I GATC 6 cut(s) 48, 283, 331, 357, 639, 694
Bsp19I CCATGG 1 cut(s) 255
BspACI CCGC 2 cut(s) 119, 537
BspANI GGCC 4 cut(s) 198, 260, 1196, 1281
BspCNI CTCAG 3 cut(s) 418, 489, 774
BspLI GGNNCC 3 cut(s) 359, 1153, 1309
BspMAI CTGCAG 1 cut(s) 1102
BspMI ACCTGC 1 cut(s) 453
BspPI GGATC 4 cut(s) 43, 352, 365, 689
BspT107I GGYRCC 1 cut(s) 1307
BspTNI GGTCTC 1 cut(s) 1200
BsrDI GCAATG 1 cut(s) 951
BsrFI RCCGGY 1 cut(s) 1310
BsrI ACTGG 2 cut(s) 362, 897
BssAI RCCGGY 1 cut(s) 1310
BssECI CCNNGG 3 cut(s) 130, 255, 353
BssMI GATC 6 cut(s) 48, 283, 331, 357, 639, 694
BssNI GRCGYC 1 cut(s) 1308
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 2 cut(s) 40, 108
Bst4CI ACNGT 4 cut(s) 343, 671, 854, 1159
BstACI GRCGYC 1 cut(s) 1308
BstC8I GCNNGC 4 cut(s) 350, 507, 1065, 1312
BstDEI CTNAG 5 cut(s) 386, 405, 497, 683, 782
BstDSI CCRYGG 2 cut(s) 255, 353
BstF5I GGATG 3 cut(s) 926, 1228, 1441
BstH2I RGCGCY 1 cut(s) 1311
BstHHI GCGC 1 cut(s) 1310
BstKTI GATC 6 cut(s) 51, 286, 334, 360, 642, 697
BstMAI GTCTC 3 cut(s) 370, 1200, 1415
BstMBI GATC 6 cut(s) 48, 283, 331, 357, 639, 694
BstMWI GCNNNNNNNGC 2 cut(s) 182, 536
BstNI CCWGG 2 cut(s) 40, 108
BstSCI CCNGG 4 cut(s) 38, 106, 1227, 1327
BstSFI CTRYAG 1 cut(s) 1098
BstSLI GKGCMC 1 cut(s) 1174
BstV1I GCAGC 1 cut(s) 504
BstX2I RGATCY 1 cut(s) 357
BstXI CCANNNNNNTGG 3 cut(s) 194, 344, 1218
BstYI RGATCY 1 cut(s) 357
BsuI GTATCC 1 cut(s) 817
BsuRI GGCC 4 cut(s) 198, 260, 1196, 1281
BtgI CCRYGG 2 cut(s) 255, 353
BtsCI GGATG 3 cut(s) 926, 1228, 1441
BtsIMutI CAGTG 2 cut(s) 339, 859
BveI ACCTGC 1 cut(s) 453
Cac8I GCNNGC 4 cut(s) 350, 507, 1065, 1312
CfoI GCGC 1 cut(s) 1310
Cfr10I RCCGGY 1 cut(s) 1310
Cfr13I GGNCC 3 cut(s) 110, 197, 1194
CseI GACGC 1 cut(s) 459
CsiI ACCWGGT 1 cut(s) 106
CviAII CATG 6 cut(s) 194, 256, 271, 281, 1191, 1432
DdeI CTNAG 5 cut(s) 386, 405, 497, 683, 782
DinI GGCGCC 1 cut(s) 1309
DpnI GATC 6 cut(s) 50, 285, 333, 359, 641, 696
DpnII GATC 6 cut(s) 48, 283, 331, 357, 639, 694
EaeI YGGCCR 1 cut(s) 258
Ecl136II GAGCTC 2 cut(s) 862, 955
Eco130I CCWWGG 1 cut(s) 255
Eco24I GRGCYC 3 cut(s) 328, 864, 957
Eco31I GGTCTC 1 cut(s) 1200
Eco47I GGWCC 1 cut(s) 110
Eco53kI GAGCTC 2 cut(s) 862, 955
Eco57I CTGAAG 1 cut(s) 990
EcoICRI GAGCTC 2 cut(s) 862, 955
EcoRI GAATTC 1 cut(s) 592
EcoRII CCWGG 2 cut(s) 38, 106
EcoT14I CCWWGG 1 cut(s) 255
EcoT38I GRGCYC 3 cut(s) 328, 864, 957
EgeI GGCGCC 1 cut(s) 1309
EheI GGCGCC 1 cut(s) 1309
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 6 cut(s) 197, 259, 274, 284, 1194, 1435
FaqI GGGAC 2 cut(s) 193, 1145
FatI CATG 6 cut(s) 193, 255, 270, 280, 1190, 1431
FbaI TGATCA 2 cut(s) 283, 331
Fnu4HI GCNGC 1 cut(s) 493
FokI GGATG 3 cut(s) 913, 1235, 1448
FriOI GRGCYC 3 cut(s) 328, 864, 957
Fsp4HI GCNGC 1 cut(s) 493
FspBI CTAG 3 cut(s) 606, 1047, 1457
GlaI GCGC 1 cut(s) 1309
GluI GCNGC 1 cut(s) 493
GsuI CTGGAG 2 cut(s) 31, 397
HaeII RGCGCY 1 cut(s) 1311
HaeIII GGCC 4 cut(s) 198, 260, 1196, 1281
HapII CCGG 5 cut(s) 1229, 1244, 1282, 1311, 1328
HgaI GACGC 1 cut(s) 459
HhaI GCGC 1 cut(s) 1310
Hin1I GRCGYC 1 cut(s) 1308
Hin1II CATG 6 cut(s) 197, 259, 274, 284, 1194, 1435
Hin6I GCGC 1 cut(s) 1308
HinP1I GCGC 1 cut(s) 1308
HincII GTYRAC 2 cut(s) 514, 1186
HindII GTYRAC 2 cut(s) 514, 1186
HindIII AAGCTT 2 cut(s) 98, 1397
HinfI GANTC 7 cut(s) 314, 476, 797, 1034, 1130, 1232, 1449
HpaI GTTAAC 1 cut(s) 1186
HpaII CCGG 5 cut(s) 1229, 1244, 1282, 1311, 1328
HphI GGTGA 5 cut(s) 28, 164, 326, 360, 1444
Hpy166II GTNNAC 4 cut(s) 25, 514, 1172, 1186
Hpy188I TCNGA 6 cut(s) 134, 916, 1039, 1135, 1264, 1349
Hpy188III TCNNGA 4 cut(s) 10, 75, 376, 1162
Hpy8I GTNNAC 4 cut(s) 25, 514, 1172, 1186
Hpy99I CGWCG 1 cut(s) 453
HpyAV CCTTC 5 cut(s) 149, 705, 839, 1142, 1159
HpyCH4III ACNGT 4 cut(s) 343, 671, 854, 1159
HpyCH4IV ACGT 1 cut(s) 230
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 536
HpyF3I CTNAG 5 cut(s) 386, 405, 497, 683, 782
HpySE526I ACGT 1 cut(s) 230
Hsp92I GRCGYC 1 cut(s) 1308
Hsp92II CATG 6 cut(s) 197, 259, 274, 284, 1194, 1435
HspAI GCGC 1 cut(s) 1308
KasI GGCGCC 1 cut(s) 1307
KroI GCCGGC 1 cut(s) 1310
KroNI GCCGGC 1 cut(s) 1312
Ksp22I TGATCA 2 cut(s) 283, 331
KspAI GTTAAC 1 cut(s) 1186
Kzo9I GATC 6 cut(s) 48, 283, 331, 357, 639, 694
LmnI GCTCC 3 cut(s) 463, 859, 1157
Lsp1109I GCAGC 1 cut(s) 504
LweI GCATC 2 cut(s) 414, 421
MabI ACCWGGT 1 cut(s) 106
MaeI CTAG 3 cut(s) 606, 1047, 1457
MaeII ACGT 1 cut(s) 230
MaeIII GTNAC 4 cut(s) 152, 226, 1110, 1411
MalI GATC 6 cut(s) 50, 285, 333, 359, 641, 696
MboI GATC 6 cut(s) 48, 283, 331, 357, 639, 694
MboII GAAGA 5 cut(s) 237, 283, 700, 720, 1415
MflI RGATCY 1 cut(s) 357
MhlI GDGCHC 4 cut(s) 328, 864, 957, 1174
MlsI TGGCCA 1 cut(s) 260
MluCI AATT 9 cut(s) 69, 189, 287, 547, 564, 592, 989, 1008, 1285
MluNI TGGCCA 1 cut(s) 260
Mly113I GGCGCC 1 cut(s) 1308
MlyI GAGTC 1 cut(s) 1443
MmeI TCCRAC 2 cut(s) 321, 801
Mox20I TGGCCA 1 cut(s) 260
MroNI GCCGGC 1 cut(s) 1310
MroXI GAANNNNTTC 2 cut(s) 1083, 1296
MscI TGGCCA 1 cut(s) 260
MseI TTAA 5 cut(s) 203, 999, 1074, 1185, 1361
MslI CAYNNNNRTG 1 cut(s) 937
Msp20I TGGCCA 1 cut(s) 260
MspI CCGG 5 cut(s) 1229, 1244, 1282, 1311, 1328
MspR9I CCNGG 4 cut(s) 40, 108, 1229, 1329
MvaI CCWGG 2 cut(s) 40, 108
MwoI GCNNNNNNNGC 2 cut(s) 182, 536
NaeI GCCGGC 1 cut(s) 1312
NarI GGCGCC 1 cut(s) 1308
NciI CCSGG 2 cut(s) 1229, 1329
NcoI CCATGG 1 cut(s) 255
NdeII GATC 6 cut(s) 48, 283, 331, 357, 639, 694
NgoMIV GCCGGC 1 cut(s) 1310
NlaIII CATG 6 cut(s) 197, 259, 274, 284, 1194, 1435
NlaIV GGNNCC 3 cut(s) 359, 1153, 1309
NmuCI GTSAC 1 cut(s) 152
PdiI GCCGGC 1 cut(s) 1312
PdmI GAANNNNTTC 2 cut(s) 1083, 1296
PfeI GAWTC 6 cut(s) 314, 476, 797, 1034, 1130, 1232
PkrI GCNGC 1 cut(s) 494
PleI GAGTC 1 cut(s) 1443
PluTI GGCGCC 1 cut(s) 1311
PpsI GAGTC 1 cut(s) 1443
Psp124BI GAGCTC 2 cut(s) 864, 957
Psp6I CCWGG 2 cut(s) 38, 106
PspGI CCWGG 2 cut(s) 38, 106
PspN4I GGNNCC 3 cut(s) 359, 1153, 1309
PspPI GGNCC 3 cut(s) 110, 197, 1194
PstI CTGCAG 1 cut(s) 1102
PsuI RGATCY 1 cut(s) 357
RseI CAYNNNNRTG 1 cut(s) 937
SacI GAGCTC 2 cut(s) 864, 957
SaqAI TTAA 5 cut(s) 203, 999, 1074, 1185, 1361
SatI GCNGC 1 cut(s) 493
Sau3AI GATC 6 cut(s) 48, 283, 331, 357, 639, 694
Sau96I GGNCC 3 cut(s) 110, 197, 1194
SchI GAGTC 1 cut(s) 1443
ScrFI CCNGG 4 cut(s) 40, 108, 1229, 1329
SduI GDGCHC 4 cut(s) 328, 864, 957, 1174
SexAI ACCWGGT 1 cut(s) 106
SfaNI GCATC 2 cut(s) 414, 421
SfcI CTRYAG 1 cut(s) 1098
SfoI GGCGCC 1 cut(s) 1309
SinI GGWCC 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 937
SmlI CTYRAG 1 cut(s) 1474
SmoI CTYRAG 1 cut(s) 1474
Sse9I AATT 9 cut(s) 69, 189, 287, 547, 564, 592, 989, 1008, 1285
SsiI CCGC 2 cut(s) 119, 537
SspDI GGCGCC 1 cut(s) 1307
SspI AATATT 1 cut(s) 634
SspMI CTAG 3 cut(s) 606, 1047, 1457
SstI GAGCTC 2 cut(s) 864, 957
StyD4I CCNGG 4 cut(s) 38, 106, 1227, 1327
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 4 cut(s) 343, 671, 854, 1159
TaiI ACGT 1 cut(s) 233
TaqI TCGA 4 cut(s) 322, 572, 642, 791
TasI AATT 9 cut(s) 69, 189, 287, 547, 564, 592, 989, 1008, 1285
TfiI GAWTC 6 cut(s) 314, 476, 797, 1034, 1130, 1232
Tru1I TTAA 5 cut(s) 203, 999, 1074, 1185, 1361
Tru9I TTAA 5 cut(s) 203, 999, 1074, 1185, 1361
TscAI CASTG 2 cut(s) 346, 859
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 1 cut(s) 492
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 7 cut(s) 182, 237, 877, 915, 1224, 1442, 1452
TspRI CASTG 2 cut(s) 346, 859
VneI GTGCAC 1 cut(s) 1170
VpaK11BI GGWCC 1 cut(s) 110
XapI RAATTY 3 cut(s) 189, 592, 1285
XmnI GAANNNNTTC 2 cut(s) 1083, 1296
XspI CTAG 3 cut(s) 606, 1047, 1457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.