Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001080

Physical Location & Seq

Genomic Coordinates Forward (+)

24325781 .. 24326783

Gene Structure 1003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G230000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGACGGGGTGGTTTTTTTTGAGGCGGTATTTTACTAAACAACGTCATGATTTATTTAGTGCGGCCACAGATACAACTTCAGCCACATTAGAATGGGCAATGGCTGAGCTATTACGCAACCTTGAAAAGCTGTCAAAAGCTCAAGAGGAGCTGAAGCAAGTCATTGGCAAAGGAAAATCAGTGCAGGAATCAGACATCACTCGGCTCCCTTACTTACAAGCCATAATCAAAGAGACCTTCTGGCTGCACCCAACAGAAATCTGCGGTTACATTGTACCAAAGGGTGCACAAGTGTTGGCCAACGCATGGGCTATTGGCAGAGACCCCAACATTTGGGACAGCCCTACCTCATTTATCCCTGAAAGGTTTTTGTTTTTGGATATCGACGTTACCGGCCATAACTTTGAACTTATTCCGTTTGGTGGTGGGAGGAGAATATGTCCTGGATTGCCTTTTGCGATGAGAATGTTGAATTTGATGTTGGGTGCACTTATTAACTCGTTTGATAATTGGAAGCTTGAAGATGGAGTTGTGCCGAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

182

Amino Acids

20.65

Weight (kDa)

7.78

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33720 AT1G33720 AT1G33720 AT1G33720 AT1G33720 AT1G33730 AT1G33730 AT2G45550 AT2G45560 AT2G45560 AT2G45560 AT2G45570 AT2G45580 AT2G45580 AT2G45580 AT3G61040 AT3G61040
fragaria_vesca	FvH4_5g01070 FvH4_5g01071
malus_domestica	MD13G1112700.v1.1 MD13G1112900.v1.1 MD13G1113000.v1.1 MD16G1116100.v1.1
prunus_persica	Prupe.1G229700_v2.0.a1 Prupe.1G230000_v2.0.a1 Prupe.1G230200_v2.0.a1 Prupe.1G230700_v2.0.a1 Prupe.2G017600_v2.0.a1 Prupe.2G019100_v2.0.a1 Prupe.5G084700_v2.0.a1
pyrus_communis	pycom13g09780 pycom13g09800 pycom13g09820 pycom13g09830 pycom16g09930 pycom16g09940 pycom16g09970
rosa_chinensis	RchiOBHm_Chr7g0200251 RchiOBHm_Chr7g0200291 RchiOBHm_Chr7g0208051
rosa_laevigata	RLG00000003258 RLG00000003739 RLG00000003740
rosa_multiflora	Rmu_sc0002039.1_g000017 Rmu_sc0017949.1_g000001 Rmu_sc0019284.1_g000003
rosa_roxburghii	Rroxscaffold_3G00250850 Rroxscaffold_3G00256180 Rroxscaffold_3G00256190
rosa_rugosa	Rorug07G0058800 Rorug07G0058900
rosa_samantha	Rh7AG184300 Rh7AG234800 Rh7BG187000 Rh7CG194700 Rh7CG250300
rosa_wichuraiana	Rw0G018050 Rw7G016130 Rw7G020050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	306, 333
AciI	CCGC	3 cut(s)	25, 62, 264
AcoI	YGGCCR	3 cut(s)	63, 297, 394
AcsI	RAATTY	1 cut(s)	472
AcuI	CTGAAG	2 cut(s)	63, 173
AfaI	GTAC	1 cut(s)	276
AfiI	CCNNNNNNNGG	3 cut(s)	306, 333, 422
AgsI	TTSAA	4 cut(s)	125, 407, 472, 521
AjnI	CCWGG	1 cut(s)	442
AjuI	GAANNNNNNNTTGG	2 cut(s)	464, 496
AluBI	AGCT	5 cut(s)	109, 130, 140, 151, 517
AluI	AGCT	5 cut(s)	109, 130, 140, 151, 517
Alw21I	GWGCWC	2 cut(s)	289, 490
Alw26I	GTCTC	2 cut(s)	227, 315
Alw44I	GTGCAC	2 cut(s)	285, 486
AoxI	GGCC	3 cut(s)	63, 297, 394
ApaLI	GTGCAC	2 cut(s)	285, 486
ApeKI	GCWGC	1 cut(s)	244
ApoI	RAATTY	1 cut(s)	472
Asp700I	GAANNNNTTC	1 cut(s)	411
BaeGI	GKGCMC	2 cut(s)	289, 490
BalI	TGGCCA	1 cut(s)	299
Bbv12I	GWGCWC	2 cut(s)	289, 490
BbvI	GCAGC	1 cut(s)	231
BccI	CCATC	1 cut(s)	518
BciT130I	CCWGG	1 cut(s)	444
BcoDI	GTCTC	2 cut(s)	227, 315
BisI	GCNGC	2 cut(s)	63, 245
BlpI	GCTNAGC	1 cut(s)	105
BlsI	GCNGC	2 cut(s)	64, 246
Bme1390I	CCNGG	1 cut(s)	444
BmiI	GGNNCC	1 cut(s)	206
BmrFI	CCNGG	1 cut(s)	444
Bpu1102I	GCTNAGC	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	126
BsaI	GGTCTC	2 cut(s)	227, 315
BsaXI	ACNNNNNCTCC	2 cut(s)	424, 454
Bsc4I	CCNNNNNNNGG	3 cut(s)	306, 333, 422
Bse118I	RCCGGY	1 cut(s)	392
Bse3DI	GCAATG	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	444
BseLI	CCNNNNNNNGG	3 cut(s)	306, 333, 422
BseMI	GCAATG	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	96
BseRI	GAGGAG	2 cut(s)	161, 445
BseSI	GKGCMC	2 cut(s)	289, 490
BseXI	GCAGC	1 cut(s)	231
BsgI	GTGCAG	2 cut(s)	203, 230
BshFI	GGCC	3 cut(s)	65, 299, 396
BsiHKAI	GWGCWC	2 cut(s)	289, 490
BsiSI	CCGG	1 cut(s)	393
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	3 cut(s)	306, 333, 422
BsmAI	GTCTC	2 cut(s)	227, 315
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	3 cut(s)	65, 299, 396
Bso31I	GGTCTC	2 cut(s)	227, 315
Bsp1286I	GDGCHC	2 cut(s)	289, 490
Bsp1720I	GCTNAGC	1 cut(s)	105
BspACI	CCGC	3 cut(s)	25, 62, 264
BspANI	GGCC	3 cut(s)	65, 299, 396
BspCNI	CTCAG	1 cut(s)	97
BspHI	TCATGA	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	206
BspTNI	GGTCTC	2 cut(s)	227, 315
BsrDI	GCAATG	1 cut(s)	105
BsrFI	RCCGGY	1 cut(s)	392
BssAI	RCCGGY	1 cut(s)	392
Bst2UI	CCWGG	1 cut(s)	444
BstDEI	CTNAG	1 cut(s)	105
BstMAI	GTCTC	2 cut(s)	227, 315
BstNI	CCWGG	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	442
BstSLI	GKGCMC	2 cut(s)	289, 490
BstV1I	GCAGC	1 cut(s)	231
BsuRI	GGCC	3 cut(s)	65, 299, 396
BtgZI	GCGATG	1 cut(s)	473
BtsIMutI	CAGTG	1 cut(s)	186
CciI	TCATGA	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	392
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	2 cut(s)	47, 306
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	1 cut(s)	105
EaeI	YGGCCR	3 cut(s)	63, 297, 394
Eco31I	GGTCTC	2 cut(s)	227, 315
Eco32I	GATATC	1 cut(s)	382
Eco57I	CTGAAG	2 cut(s)	63, 173
EcoRII	CCWGG	1 cut(s)	442
EcoRV	GATATC	1 cut(s)	382
FaeI	CATG	2 cut(s)	50, 309
FaiI	YATR	5 cut(s)	48, 224, 307, 399, 439
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	2 cut(s)	46, 305
Fnu4HI	GCNGC	2 cut(s)	63, 245
Fsp4HI	GCNGC	2 cut(s)	63, 245
GluI	GCNGC	2 cut(s)	63, 245
HaeIII	GGCC	3 cut(s)	65, 299, 396
HapII	CCGG	1 cut(s)	393
Hin1II	CATG	2 cut(s)	50, 309
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	1 cut(s)	188
HpaII	CCGG	1 cut(s)	393
Hpy166II	GTNNAC	2 cut(s)	287, 488
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	2 cut(s)	47, 143
Hpy8I	GTNNAC	2 cut(s)	287, 488
Hpy99I	CGWCG	1 cut(s)	389
HpyAV	CCTTC	1 cut(s)	247
HpyCH4IV	ACGT	2 cut(s)	43, 387
HpyCH4V	TGCA	4 cut(s)	184, 247, 287, 488
HpyF3I	CTNAG	1 cut(s)	105
HpySE526I	ACGT	2 cut(s)	43, 387
Hsp92II	CATG	2 cut(s)	50, 309
LmnI	GCTCC	2 cut(s)	148, 210
LpnPI	CCDG	6 cut(s)	170, 226, 372, 406, 429, 456
Lsp1109I	GCAGC	1 cut(s)	231
MaeII	ACGT	2 cut(s)	43, 387
MaeIII	GTNAC	2 cut(s)	266, 388
MboII	GAAGA	1 cut(s)	533
MhlI	GDGCHC	2 cut(s)	289, 490
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	2 cut(s)	472, 508
MluNI	TGGCCA	1 cut(s)	299
MnlI	CCTC	4 cut(s)	15, 139, 358, 423
Mox20I	TGGCCA	1 cut(s)	299
MroXI	GAANNNNTTC	1 cut(s)	411
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	1 cut(s)	495
MslI	CAYNNNNRTG	1 cut(s)	91
Msp20I	TGGCCA	1 cut(s)	299
MspI	CCGG	1 cut(s)	393
MspR9I	CCNGG	1 cut(s)	444
MvaI	CCWGG	1 cut(s)	444
NlaIII	CATG	2 cut(s)	50, 309
NlaIV	GGNNCC	1 cut(s)	206
NmeAIII	GCCGAG	1 cut(s)	181
PagI	TCATGA	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	188
PflMI	CCANNNNNTGG	2 cut(s)	306, 333
PfoI	TCCNGGA	1 cut(s)	442
PkrI	GCNGC	2 cut(s)	64, 246
Psp6I	CCWGG	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	442
PspN4I	GGNNCC	1 cut(s)	206
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
RseI	CAYNNNNRTG	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	2 cut(s)	63, 245
ScrFI	CCNGG	1 cut(s)	444
SduI	GDGCHC	2 cut(s)	289, 490
SmiMI	CAYNNNNRTG	1 cut(s)	91
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
Sse9I	AATT	2 cut(s)	472, 508
SsiI	CCGC	3 cut(s)	25, 62, 264
StyD4I	CCNGG	1 cut(s)	442
TaiI	ACGT	2 cut(s)	46, 390
TaqI	TCGA	1 cut(s)	384
TasI	AATT	2 cut(s)	472, 508
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	1 cut(s)	186
TseI	GCWGC	1 cut(s)	244
TspGWI	ACGGA	1 cut(s)	405
TspRI	CASTG	1 cut(s)	186
Van91I	CCANNNNNTGG	2 cut(s)	306, 333
VneI	GTGCAC	2 cut(s)	285, 486
XapI	RAATTY	1 cut(s)	472
XmnI	GAANNNNTTC	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.