pycom13g09820

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0001080
Physical Location & Seq
Forward (+)
6555239 .. 6556286
1048 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g09820.3

Sequence Viewer

Length: 867 bp
ATGGGCGGAGAGTTCAAGGAGATTGTGTGGGGTTTGATGGAAGAGGCAGGGAAGCCAAACTTGGGGGACTATTTTCCTCTGCTTAGGAAACTTGACCCCCAAGGCATTCGAGGGCGCATGATCGAACATTTTCTCAAGATTGATTCGCTTTTTGATCGAATGATCACGCAAAGGTTAGAATTGAGAAAATCGAACGATGATGTCACAAATAATGATATGATGGATTCTCTCTTGAACATCGATGAAGGGAGCAATGAGGATATGGACAAGCTCTTGGTTGAACATCTGCTTCAGTCTCTATTCATTGCGGGCACGGATACAACTTCAACCACGCTGGAATGGGCAATGGTTGAACTACTACGCAACCCAGAAAAACTGTCGAAAGCGCAAGAGGAACTAGATCAAGTTATTGGCAAGGGAAAACCAGTTGAAGAATCGGACATTGCTAGACTCCCTTACTTACAAGCAATAATCAAAGAGACCCTCCGGTTGCATCCGGCTGCACCATTACTACTCCCTCGAAAGGGTGCACAAGTGCTGGTCAATGCATGGGCTATAGGCAGAGACCCCTGCATTGGGGACAACCCGACCTCATTTGCACCGGAGAGGTTTTTCAGATTAGATGATCAAATCGATGTTTTAGGCAAGAATTTTGAGCTTATTCCATTTGGTGGCGGGAGGAGAATATGTCCAGGGCTGCCATTGGCGATGCGGATGCTATACTTGATTTTGGGTTCACTTATTAACTCATTTATTTGGAAGCTTGAAGATGGTGTTATATCAGAGAACATGAACATGGAGGAGAAGTTTGGCCTCACCTTACGGATGGCTCATCCTCTAAGAGCTATGCCAAAAGTCCTTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

289

Amino Acids

32.61

Weight (kDa)

5.13

Isoelectric Point (pI)

31.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 671
AciI CCGC 4 cut(s) 6, 308, 675, 712
AcsI RAATTY 1 cut(s) 649
AcuI CTGAAG 1 cut(s) 275
AfiI CCNNNNNNNGG 6 cut(s) 62, 523, 524, 575, 576, 671
AgsI TTSAA 7 cut(s) 16, 235, 281, 327, 353, 431, 767
AjnI CCWGG 1 cut(s) 691
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
AluBI AGCT 4 cut(s) 271, 658, 763, 845
AluI AGCT 4 cut(s) 271, 658, 763, 845
Alw21I GWGCWC 1 cut(s) 532
Alw26I GTCTC 3 cut(s) 300, 473, 558
Alw44I GTGCAC 1 cut(s) 528
AoxI GGCC 1 cut(s) 811
ApaLI GTGCAC 1 cut(s) 528
ApeKI GCWGC 2 cut(s) 500, 697
ApoI RAATTY 1 cut(s) 649
Asp700I GAANNNNTTC 1 cut(s) 129
AspLEI GCGC 2 cut(s) 117, 388
AsuHPI GGTGA 1 cut(s) 808
BaeGI GKGCMC 2 cut(s) 314, 532
Bbv12I GWGCWC 1 cut(s) 532
BbvI GCAGC 2 cut(s) 487, 684
BccI CCATC 4 cut(s) 31, 214, 764, 820
BcgI CGANNNNNNTGC 2 cut(s) 697, 731
BciT130I CCWGG 1 cut(s) 693
BciVI GTATCC 1 cut(s) 310
BclI TGATCA 2 cut(s) 162, 625
BcoDI GTCTC 3 cut(s) 300, 473, 558
BfaI CTAG 2 cut(s) 398, 447
BfmI CTRYAG 1 cut(s) 555
BfuI GTATCC 1 cut(s) 310
BisI GCNGC 2 cut(s) 501, 698
BlsI GCNGC 2 cut(s) 502, 699
Bme1390I CCNGG 1 cut(s) 693
BmrFI CCNGG 1 cut(s) 693
BmsI GCATC 3 cut(s) 502, 699, 705
Bpu10I CCTNAGC 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 119
Bsa29I ATCGAT 2 cut(s) 240, 633
BsaI GGTCTC 2 cut(s) 473, 558
BsaJI CCNNGG 2 cut(s) 100, 692
BsaWI WCCGGW 2 cut(s) 486, 601
BsaXI ACNNNNNCTCC 6 cut(s) 11, 41, 673, 703, 791, 821
Bsc4I CCNNNNNNNGG 6 cut(s) 62, 523, 524, 575, 576, 671
Bse1I ACTGG 1 cut(s) 425
Bse3DI GCAATG 4 cut(s) 259, 303, 351, 441
BseBI CCWGG 1 cut(s) 693
BseCI ATCGAT 2 cut(s) 240, 633
BseDI CCNNGG 2 cut(s) 100, 692
BseGI GGATG 4 cut(s) 493, 720, 831, 832
BseLI CCNNNNNNNGG 6 cut(s) 62, 523, 524, 575, 576, 671
BseMI GCAATG 4 cut(s) 259, 303, 351, 441
BseNI ACTGG 1 cut(s) 425
BseRI GAGGAG 2 cut(s) 694, 815
BseSI GKGCMC 2 cut(s) 314, 532
BseXI GCAGC 2 cut(s) 487, 684
BsgI GTGCAG 1 cut(s) 486
BshFI GGCC 1 cut(s) 813
BshVI ATCGAT 2 cut(s) 240, 633
BsiHKAI GWGCWC 1 cut(s) 532
BsiSI CCGG 3 cut(s) 487, 497, 602
BslFI GGGAC 2 cut(s) 80, 593
BslI CCNNNNNNNGG 6 cut(s) 62, 523, 524, 575, 576, 671
BsmAI GTCTC 3 cut(s) 300, 473, 558
BsmFI GGGAC 2 cut(s) 80, 593
BsmI GAATGC 1 cut(s) 105
BsnI GGCC 1 cut(s) 813
Bso31I GGTCTC 2 cut(s) 473, 558
Bsp1286I GDGCHC 2 cut(s) 314, 532
Bsp143I GATC 5 cut(s) 120, 154, 162, 400, 625
BspACI CCGC 4 cut(s) 6, 308, 675, 712
BspANI GGCC 1 cut(s) 813
BspDI ATCGAT 2 cut(s) 240, 633
BspTNI GGTCTC 2 cut(s) 473, 558
BsrDI GCAATG 4 cut(s) 259, 303, 351, 441
BsrI ACTGG 1 cut(s) 425
BssECI CCNNGG 2 cut(s) 100, 692
BssMI GATC 5 cut(s) 120, 154, 162, 400, 625
BssT1I CCWWGG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 693
Bst4CI ACNGT 1 cut(s) 378
Bst6I CTCTTC 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 310
BstDEI CTNAG 2 cut(s) 83, 839
BstF5I GGATG 4 cut(s) 493, 720, 831, 832
BstHHI GCGC 2 cut(s) 117, 388
BstKTI GATC 5 cut(s) 123, 157, 165, 403, 628
BstMAI GTCTC 3 cut(s) 300, 473, 558
BstMBI GATC 5 cut(s) 120, 154, 162, 400, 625
BstNI CCWGG 1 cut(s) 693
BstSCI CCNGG 1 cut(s) 691
BstSFI CTRYAG 1 cut(s) 555
BstSLI GKGCMC 2 cut(s) 314, 532
BstV1I GCAGC 2 cut(s) 487, 684
Bsu15I ATCGAT 2 cut(s) 240, 633
BsuI GTATCC 1 cut(s) 310
BsuRI GGCC 1 cut(s) 813
BsuTUI ATCGAT 2 cut(s) 240, 633
BtgZI GCGATG 1 cut(s) 722
BtsCI GGATG 4 cut(s) 493, 720, 831, 832
Cac8I GCNNGC 1 cut(s) 310
CfoI GCGC 2 cut(s) 117, 388
ClaI ATCGAT 2 cut(s) 240, 633
CviAII CATG 4 cut(s) 118, 549, 790, 796
DdeI CTNAG 2 cut(s) 83, 839
DpnI GATC 5 cut(s) 122, 156, 164, 402, 627
DpnII GATC 5 cut(s) 120, 154, 162, 400, 625
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
EciI GGCGGA 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 100
Eco31I GGTCTC 2 cut(s) 473, 558
Eco57I CTGAAG 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 691
EcoT14I CCWWGG 1 cut(s) 100
EcoT22I ATGCAT 1 cut(s) 550
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 4 cut(s) 121, 552, 793, 799
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FaqI GGGAC 2 cut(s) 80, 593
FatI CATG 4 cut(s) 117, 548, 789, 795
FauI CCCGC 2 cut(s) 301, 668
FbaI TGATCA 2 cut(s) 162, 625
Fnu4HI GCNGC 2 cut(s) 501, 698
FokI GGATG 4 cut(s) 480, 727, 819, 838
Fsp4HI GCNGC 2 cut(s) 501, 698
FspBI CTAG 2 cut(s) 398, 447
GlaI GCGC 2 cut(s) 116, 387
GluI GCNGC 2 cut(s) 501, 698
HaeIII GGCC 1 cut(s) 813
HapII CCGG 3 cut(s) 487, 497, 602
HhaI GCGC 2 cut(s) 117, 388
Hin1II CATG 4 cut(s) 121, 552, 793, 799
Hin6I GCGC 2 cut(s) 115, 386
HinP1I GCGC 2 cut(s) 115, 386
HindIII AAGCTT 1 cut(s) 761
HinfI GANTC 4 cut(s) 143, 224, 434, 450
HpaII CCGG 3 cut(s) 487, 497, 602
HphI GGTGA 1 cut(s) 808
Hpy166II GTNNAC 2 cut(s) 530, 737
Hpy188I TCNGA 4 cut(s) 439, 617, 784, 866
Hpy188III TCNNGA 2 cut(s) 136, 232
Hpy8I GTNNAC 2 cut(s) 530, 737
HpyAV CCTTC 1 cut(s) 239
HpyCH4III ACNGT 1 cut(s) 378
HpyCH4V TGCA 6 cut(s) 493, 503, 530, 548, 573, 599
HpyF3I CTNAG 2 cut(s) 83, 839
Hsp92II CATG 4 cut(s) 121, 552, 793, 799
HspAI GCGC 2 cut(s) 115, 386
Ksp22I TGATCA 2 cut(s) 162, 625
Kzo9I GATC 5 cut(s) 120, 154, 162, 400, 625
LmnI GCTCC 1 cut(s) 249
Lsp1109I GCAGC 2 cut(s) 487, 684
LweI GCATC 3 cut(s) 502, 699, 705
MaeI CTAG 2 cut(s) 398, 447
MaeIII GTNAC 1 cut(s) 202
MalI GATC 5 cut(s) 122, 156, 164, 402, 627
MboI GATC 5 cut(s) 120, 154, 162, 400, 625
MboII GAAGA 3 cut(s) 53, 443, 779
MhlI GDGCHC 2 cut(s) 314, 532
MluCI AATT 2 cut(s) 179, 649
MlyI GAGTC 1 cut(s) 444
Mph1103I ATGCAT 1 cut(s) 550
MroXI GAANNNNTTC 1 cut(s) 129
MseI TTAA 1 cut(s) 744
MslI CAYNNNNRTG 1 cut(s) 794
MspI CCGG 3 cut(s) 487, 497, 602
MspR9I CCNGG 1 cut(s) 693
Mva1269I GAATGC 1 cut(s) 105
MvaI CCWGG 1 cut(s) 693
NdeII GATC 5 cut(s) 120, 154, 162, 400, 625
NlaIII CATG 4 cut(s) 121, 552, 793, 799
NmuCI GTSAC 1 cut(s) 202
NsiI ATGCAT 1 cut(s) 550
PctI GAATGC 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 129
PfeI GAWTC 3 cut(s) 143, 224, 434
PflMI CCANNNNNTGG 1 cut(s) 671
PkrI GCNGC 2 cut(s) 502, 699
PleI GAGTC 1 cut(s) 444
PpsI GAGTC 1 cut(s) 444
Psp6I CCWGG 1 cut(s) 691
PspGI CCWGG 1 cut(s) 691
RseI CAYNNNNRTG 1 cut(s) 794
SaqAI TTAA 1 cut(s) 744
SatI GCNGC 2 cut(s) 501, 698
Sau3AI GATC 5 cut(s) 120, 154, 162, 400, 625
SchI GAGTC 1 cut(s) 444
ScrFI CCNGG 1 cut(s) 693
SduI GDGCHC 2 cut(s) 314, 532
SetI ASST 8 cut(s) 176, 273, 593, 611, 660, 765, 821, 847
SfaNI GCATC 3 cut(s) 502, 699, 705
SfcI CTRYAG 1 cut(s) 555
SmiMI CAYNNNNRTG 1 cut(s) 794
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 2 cut(s) 179, 649
SsiI CCGC 4 cut(s) 6, 308, 675, 712
SspMI CTAG 2 cut(s) 398, 447
StyD4I CCNGG 1 cut(s) 691
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 1 cut(s) 378
TaqI TCGA 8 cut(s) 109, 123, 157, 191, 240, 380, 520, 633
TasI AATT 2 cut(s) 179, 649
TfiI GAWTC 3 cut(s) 143, 224, 434
Tru1I TTAA 1 cut(s) 744
Tru9I TTAA 1 cut(s) 744
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 2 cut(s) 500, 697
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 3 cut(s) 258, 292, 806
TspGWI ACGGA 2 cut(s) 329, 838
Van91I CCANNNNNTGG 1 cut(s) 671
VneI GTGCAC 1 cut(s) 528
XapI RAATTY 1 cut(s) 649
XmnI GAANNNNTTC 1 cut(s) 129
XspI CTAG 2 cut(s) 398, 447
Zsp2I ATGCAT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.