Rmu_sc0019284.1_g000003

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019284.1
OG0001080
Physical Location & Seq
Forward (+)
16567 .. 19262
2696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019284.1_g000003.1.cds

Sequence Viewer

Length: 1245 bp
atggccaaacaagtcatgcaaacccatgatcaattcttctccaaccgaacaatccccgattccattcgagcccttgatcaccacattgttggcttgccatggatccctgtctcacccctctggagaaacctaagaaaaatatgcaacactcagctatttgccaacaagatgcttgatgctaaccaaaacctgcgacgcaaaaaagtggagcaactccttgaatcagtccataaaagcagcctgagtggggaagcagttgactttggtagggcagctttcaccacaacactcaatttgctctctaatacaactttttcaattgatttagcagacccgagttccaaaatggccagggagttcaaggagatgatgcataatattatgatcgaggctggaaaaccaaacttgggggactattttcctgtgcttaggaagattgatcctaatggcagaagaaggagaatgataaagtattttggaaagataatagatttagttgaaacaatagttcagcagaggttggagctgagaaaatcgactgaatctgcaacaaagaacgatgtgttggatacccttctcactattacagaagaaaacagtgaggagctcaacaaaaatcaactatatcatttcatactggttctttttgttgcagggtcagacacaacaacatccacattccaatgggcaatggcagaggtcttgcacaaccctgaagttctgtcaaaagcacaattagagcttaacgaagtaattggcaaaggcaatccagttgaggaatcagacattactagacttccttacttgcaagccattattaaagaaacatttcgtatgcaccctgcagttcctttactacttccccgaaaagccgaatcagatgtagaaattgaaggctccacagtcccaaagggtgcacaagtgcttgttaacgcatgggccattggcagagacccaagtatatgggacgacccggattcattcaagccggagagatttttggggtctgaacttgatgttagaggccggaattttgaacttattccatttggcgccggcaggagaatatgtccaggcttaccattggcaatcagaatgttgcacttaatgttgggttctcttatccattcctttgtttggaagcttgaaggtggagttacaccagagaacatgaacatggatgataagtttggactcaccctagagatggctaaacccttgagagctatccctatccctctgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

414

Amino Acids

46.89

Weight (kDa)

6.82

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 198
AccB1I GGYRCC 1 cut(s) 1052
AclWI GGATC 3 cut(s) 97, 110, 434
AcoI YGGCCR 2 cut(s) 3, 348
AcsI RAATTY 1 cut(s) 1030
AcuI CTGAAG 1 cut(s) 735
AcyI GRCGYC 1 cut(s) 1053
AfiI CCNNNNNNNGG 4 cut(s) 247, 407, 1137, 1207
AgsI TTSAA 8 cut(s) 221, 318, 361, 500, 893, 985, 1037, 1148
AjnI CCWGG 2 cut(s) 350, 1072
AjuI GAANNNNNNNTTGG 2 cut(s) 548, 580
AluBI AGCT 7 cut(s) 154, 275, 526, 607, 742, 1144, 1226
AluI AGCT 7 cut(s) 154, 275, 526, 607, 742, 1144, 1226
Alw21I GWGCWC 2 cut(s) 609, 919
Alw26I GTCTC 2 cut(s) 115, 945
Alw44I GTGCAC 1 cut(s) 915
AlwI GGATC 3 cut(s) 97, 110, 434
Ama87I CYCGRG 1 cut(s) 334
AoxI GGCC 4 cut(s) 3, 348, 939, 1024
ApaLI GTGCAC 1 cut(s) 915
ApeKI GCWGC 2 cut(s) 237, 272
ApoI RAATTY 1 cut(s) 1030
Asp700I GAANNNNTTC 2 cut(s) 828, 1041
AspLEI GCGC 1 cut(s) 1055
AspS9I GGNCC 1 cut(s) 939
AsuC2I CCSGG 1 cut(s) 974
AsuHPI GGTGA 4 cut(s) 71, 105, 271, 1189
AvaI CYCGRG 1 cut(s) 334
BaeGI GKGCMC 1 cut(s) 919
BalI TGGCCA 2 cut(s) 5, 350
BamHI GGATCC 1 cut(s) 102
BanI GGYRCC 1 cut(s) 1052
BanII GRGCYC 2 cut(s) 73, 609
Bbv12I GWGCWC 2 cut(s) 609, 919
BbvI GCAGC 2 cut(s) 249, 284
BccI CCATC 1 cut(s) 1201
BciT130I CCWGG 2 cut(s) 352, 1074
BciVI GTATCC 1 cut(s) 562
BclI TGATCA 2 cut(s) 28, 76
BcnI CCSGG 1 cut(s) 974
BcoDI GTCTC 2 cut(s) 115, 945
BfaI CTAG 2 cut(s) 792, 1202
BfmI CTRYAG 1 cut(s) 843
BfoI RGCGCY 1 cut(s) 1056
BfuAI ACCTGC 1 cut(s) 198
BfuI GTATCC 1 cut(s) 562
BisI GCNGC 2 cut(s) 238, 273
BlsI GCNGC 2 cut(s) 239, 274
Bme1390I CCNGG 3 cut(s) 352, 974, 1074
BmeT110I CYCGRG 1 cut(s) 334
BmgT120I GGNCC 1 cut(s) 939
BmiI GGNNCC 3 cut(s) 104, 898, 1054
BmrFI CCNGG 3 cut(s) 352, 974, 1074
BmsI GCATC 3 cut(s) 159, 166, 360
BpmI CTGGAG 1 cut(s) 142
Bpu10I CCTNAGC 1 cut(s) 428
BpuEI CTTGAG 1 cut(s) 1240
BpuMI CCSGG 1 cut(s) 974
BsaHI GRCGYC 1 cut(s) 1053
BsaI GGTCTC 1 cut(s) 945
BsaJI CCNNGG 2 cut(s) 98, 351
BsaXI ACNNNNNCTCC 2 cut(s) 1054, 1084
Bsc4I CCNNNNNNNGG 4 cut(s) 247, 407, 1137, 1207
Bse118I RCCGGY 1 cut(s) 1055
Bse1I ACTGG 2 cut(s) 642, 770
Bse3DI GCAATG 1 cut(s) 696
BseBI CCWGG 2 cut(s) 352, 1074
BseDI CCNNGG 2 cut(s) 98, 351
BseGI GGATG 2 cut(s) 671, 1186
BseLI CCNNNNNNNGG 4 cut(s) 247, 407, 1137, 1207
BseMI GCAATG 1 cut(s) 696
BseMII CTCAG 3 cut(s) 164, 233, 518
BseNI ACTGG 2 cut(s) 642, 770
BseRI GAGGAG 1 cut(s) 617
BseSI GKGCMC 1 cut(s) 919
BseXI GCAGC 2 cut(s) 249, 284
BshFI GGCC 4 cut(s) 5, 350, 941, 1026
BshNI GGYRCC 1 cut(s) 1052
BsiHKAI GWGCWC 2 cut(s) 609, 919
BsiHKCI CYCGRG 1 cut(s) 334
BsiSI CCGG 4 cut(s) 974, 989, 1027, 1056
BslFI GGGAC 3 cut(s) 425, 890, 980
BslI CCNNNNNNNGG 4 cut(s) 247, 407, 1137, 1207
BsmAI GTCTC 2 cut(s) 115, 945
BsmFI GGGAC 3 cut(s) 425, 890, 980
BsnI GGCC 4 cut(s) 5, 350, 941, 1026
Bso31I GGTCTC 1 cut(s) 945
BsoBI CYCGRG 1 cut(s) 334
Bsp1286I GDGCHC 3 cut(s) 73, 609, 919
Bsp143I GATC 5 cut(s) 28, 76, 102, 384, 439
Bsp19I CCATGG 1 cut(s) 98
BspANI GGCC 4 cut(s) 5, 350, 941, 1026
BspCNI CTCAG 3 cut(s) 163, 234, 519
BspLI GGNNCC 3 cut(s) 104, 898, 1054
BspMAI CTGCAG 1 cut(s) 847
BspMI ACCTGC 1 cut(s) 198
BspPI GGATC 3 cut(s) 97, 110, 434
BspT107I GGYRCC 1 cut(s) 1052
BspTNI GGTCTC 1 cut(s) 945
BsrDI GCAATG 1 cut(s) 696
BsrFI RCCGGY 1 cut(s) 1055
BsrI ACTGG 2 cut(s) 642, 770
BssAI RCCGGY 1 cut(s) 1055
BssECI CCNNGG 2 cut(s) 98, 351
BssMI GATC 5 cut(s) 28, 76, 102, 384, 439
BssNI GRCGYC 1 cut(s) 1053
BssT1I CCWWGG 1 cut(s) 98
Bst2UI CCWGG 2 cut(s) 352, 1074
Bst4CI ACNGT 2 cut(s) 599, 904
BstACI GRCGYC 1 cut(s) 1053
BstC8I GCNNGC 3 cut(s) 95, 810, 1057
BstDEI CTNAG 5 cut(s) 131, 150, 242, 428, 527
BstDSI CCRYGG 1 cut(s) 98
BstF5I GGATG 2 cut(s) 671, 1186
BstH2I RGCGCY 1 cut(s) 1056
BstHHI GCGC 1 cut(s) 1055
BstKTI GATC 5 cut(s) 31, 79, 105, 387, 442
BstMAI GTCTC 2 cut(s) 115, 945
BstMBI GATC 5 cut(s) 28, 76, 102, 384, 439
BstNI CCWGG 2 cut(s) 352, 1074
BstSCI CCNGG 3 cut(s) 350, 972, 1072
BstSFI CTRYAG 1 cut(s) 843
BstSLI GKGCMC 1 cut(s) 919
BstV1I GCAGC 2 cut(s) 249, 284
BstX2I RGATCY 1 cut(s) 102
BstXI CCANNNNNNTGG 2 cut(s) 89, 963
BstYI RGATCY 1 cut(s) 102
BsuI GTATCC 1 cut(s) 562
BsuRI GGCC 4 cut(s) 5, 350, 941, 1026
BtgI CCRYGG 1 cut(s) 98
BtsCI GGATG 2 cut(s) 671, 1186
BtsIMutI CAGTG 1 cut(s) 604
BveI ACCTGC 1 cut(s) 198
Cac8I GCNNGC 3 cut(s) 95, 810, 1057
CfoI GCGC 1 cut(s) 1055
Cfr10I RCCGGY 1 cut(s) 1055
Cfr13I GGNCC 1 cut(s) 939
CseI GACGC 1 cut(s) 204
CviAII CATG 6 cut(s) 16, 26, 99, 936, 1171, 1177
DdeI CTNAG 5 cut(s) 131, 150, 242, 428, 527
DinI GGCGCC 1 cut(s) 1054
DpnI GATC 5 cut(s) 30, 78, 104, 386, 441
DpnII GATC 5 cut(s) 28, 76, 102, 384, 439
EaeI YGGCCR 2 cut(s) 3, 348
Ecl136II GAGCTC 1 cut(s) 607
Eco130I CCWWGG 1 cut(s) 98
Eco24I GRGCYC 2 cut(s) 73, 609
Eco31I GGTCTC 1 cut(s) 945
Eco53kI GAGCTC 1 cut(s) 607
Eco57I CTGAAG 1 cut(s) 735
Eco88I CYCGRG 1 cut(s) 334
EcoICRI GAGCTC 1 cut(s) 607
EcoRII CCWGG 2 cut(s) 350, 1072
EcoT14I CCWWGG 1 cut(s) 98
EcoT22I ATGCAT 1 cut(s) 375
EcoT38I GRGCYC 2 cut(s) 73, 609
EgeI GGCGCC 1 cut(s) 1054
EheI GGCGCC 1 cut(s) 1054
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 6 cut(s) 19, 29, 102, 939, 1174, 1180
FaqI GGGAC 3 cut(s) 425, 890, 980
FatI CATG 6 cut(s) 15, 25, 98, 935, 1170, 1176
FbaI TGATCA 2 cut(s) 28, 76
Fnu4HI GCNGC 2 cut(s) 238, 273
FokI GGATG 2 cut(s) 658, 1193
FriOI GRGCYC 2 cut(s) 73, 609
Fsp4HI GCNGC 2 cut(s) 238, 273
FspBI CTAG 2 cut(s) 792, 1202
GlaI GCGC 1 cut(s) 1054
GluI GCNGC 2 cut(s) 238, 273
GsuI CTGGAG 1 cut(s) 142
HaeII RGCGCY 1 cut(s) 1056
HaeIII GGCC 4 cut(s) 5, 350, 941, 1026
HapII CCGG 4 cut(s) 974, 989, 1027, 1056
HgaI GACGC 1 cut(s) 204
HhaI GCGC 1 cut(s) 1055
Hin1I GRCGYC 1 cut(s) 1053
Hin1II CATG 6 cut(s) 19, 29, 102, 939, 1174, 1180
Hin6I GCGC 1 cut(s) 1053
HinP1I GCGC 1 cut(s) 1053
HincII GTYRAC 2 cut(s) 259, 931
HindII GTYRAC 2 cut(s) 259, 931
HindIII AAGCTT 1 cut(s) 1142
HinfI GANTC 7 cut(s) 59, 221, 542, 779, 875, 977, 1194
HpaI GTTAAC 1 cut(s) 931
HpaII CCGG 4 cut(s) 974, 989, 1027, 1056
HphI GGTGA 4 cut(s) 71, 105, 271, 1189
Hpy166II GTNNAC 3 cut(s) 259, 917, 931
Hpy188I TCNGA 5 cut(s) 661, 784, 880, 1009, 1094
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 3 cut(s) 259, 917, 931
Hpy99I CGWCG 1 cut(s) 198
HpyAV CCTTC 4 cut(s) 450, 584, 887, 1142
HpyCH4III ACNGT 2 cut(s) 599, 904
HpyF3I CTNAG 5 cut(s) 131, 150, 242, 428, 527
Hsp92I GRCGYC 1 cut(s) 1053
Hsp92II CATG 6 cut(s) 19, 29, 102, 939, 1174, 1180
HspAI GCGC 1 cut(s) 1053
KasI GGCGCC 1 cut(s) 1052
KroI GCCGGC 1 cut(s) 1055
KroNI GCCGGC 1 cut(s) 1057
Ksp22I TGATCA 2 cut(s) 28, 76
KspAI GTTAAC 1 cut(s) 931
Kzo9I GATC 5 cut(s) 28, 76, 102, 384, 439
LmnI GCTCC 4 cut(s) 208, 523, 604, 902
Lsp1109I GCAGC 2 cut(s) 249, 284
LweI GCATC 3 cut(s) 159, 166, 360
MaeI CTAG 2 cut(s) 792, 1202
MaeIII GTNAC 1 cut(s) 1156
MalI GATC 5 cut(s) 30, 78, 104, 386, 441
MboI GATC 5 cut(s) 28, 76, 102, 384, 439
MboII GAAGA 4 cut(s) 28, 445, 465, 602
MfeI CAATTG 1 cut(s) 318
MflI RGATCY 1 cut(s) 102
MhlI GDGCHC 3 cut(s) 73, 609, 919
MlsI TGGCCA 2 cut(s) 5, 350
MluCI AATT 7 cut(s) 32, 292, 318, 734, 753, 888, 1030
MluNI TGGCCA 2 cut(s) 5, 350
Mly113I GGCGCC 1 cut(s) 1053
MlyI GAGTC 1 cut(s) 1188
MmeI TCCRAC 3 cut(s) 66, 501, 546
MnlI CCTC 7 cut(s) 128, 382, 510, 595, 691, 769, 1016
Mox20I TGGCCA 2 cut(s) 5, 350
Mph1103I ATGCAT 1 cut(s) 375
MroNI GCCGGC 1 cut(s) 1055
MroXI GAANNNNTTC 2 cut(s) 828, 1041
MscI TGGCCA 2 cut(s) 5, 350
MseI TTAA 4 cut(s) 744, 819, 930, 1106
MslI CAYNNNNRTG 2 cut(s) 682, 1175
Msp20I TGGCCA 2 cut(s) 5, 350
MspI CCGG 4 cut(s) 974, 989, 1027, 1056
MspR9I CCNGG 3 cut(s) 352, 974, 1074
MunI CAATTG 1 cut(s) 318
MvaI CCWGG 2 cut(s) 352, 1074
NaeI GCCGGC 1 cut(s) 1057
NarI GGCGCC 1 cut(s) 1053
NciI CCSGG 1 cut(s) 974
NcoI CCATGG 1 cut(s) 98
NdeII GATC 5 cut(s) 28, 76, 102, 384, 439
NgoMIV GCCGGC 1 cut(s) 1055
NlaIII CATG 6 cut(s) 19, 29, 102, 939, 1174, 1180
NlaIV GGNNCC 3 cut(s) 104, 898, 1054
NsiI ATGCAT 1 cut(s) 375
PdiI GCCGGC 1 cut(s) 1057
PdmI GAANNNNTTC 2 cut(s) 828, 1041
PfeI GAWTC 6 cut(s) 59, 221, 542, 779, 875, 977
PkrI GCNGC 2 cut(s) 239, 274
PleI GAGTC 1 cut(s) 1188
PluTI GGCGCC 1 cut(s) 1056
PpsI GAGTC 1 cut(s) 1188
Psp124BI GAGCTC 1 cut(s) 609
Psp6I CCWGG 2 cut(s) 350, 1072
PspGI CCWGG 2 cut(s) 350, 1072
PspN4I GGNNCC 3 cut(s) 104, 898, 1054
PspPI GGNCC 1 cut(s) 939
PstI CTGCAG 1 cut(s) 847
PsuI RGATCY 1 cut(s) 102
RseI CAYNNNNRTG 2 cut(s) 682, 1175
SacI GAGCTC 1 cut(s) 609
SaqAI TTAA 4 cut(s) 744, 819, 930, 1106
SatI GCNGC 2 cut(s) 238, 273
Sau3AI GATC 5 cut(s) 28, 76, 102, 384, 439
Sau96I GGNCC 1 cut(s) 939
SchI GAGTC 1 cut(s) 1188
ScrFI CCNGG 3 cut(s) 352, 974, 1074
SduI GDGCHC 3 cut(s) 73, 609, 919
SfaNI GCATC 3 cut(s) 159, 166, 360
SfcI CTRYAG 1 cut(s) 843
SfoI GGCGCC 1 cut(s) 1054
SmiMI CAYNNNNRTG 2 cut(s) 682, 1175
SmlI CTYRAG 1 cut(s) 1219
SmoI CTYRAG 1 cut(s) 1219
Sse9I AATT 7 cut(s) 32, 292, 318, 734, 753, 888, 1030
SspDI GGCGCC 1 cut(s) 1052
SspI AATATT 1 cut(s) 379
SspMI CTAG 2 cut(s) 792, 1202
SstI GAGCTC 1 cut(s) 609
StyD4I CCNGG 3 cut(s) 350, 972, 1072
StyI CCWWGG 1 cut(s) 98
TaaI ACNGT 2 cut(s) 599, 904
TaqI TCGA 3 cut(s) 67, 387, 536
TasI AATT 7 cut(s) 32, 292, 318, 734, 753, 888, 1030
TfiI GAWTC 6 cut(s) 59, 221, 542, 779, 875, 977
Tru1I TTAA 4 cut(s) 744, 819, 930, 1106
Tru9I TTAA 4 cut(s) 744, 819, 930, 1106
TscAI CASTG 1 cut(s) 604
TseI GCWGC 2 cut(s) 237, 272
TspDTI ATGAA 3 cut(s) 622, 969, 1187
TspRI CASTG 1 cut(s) 604
VneI GTGCAC 1 cut(s) 915
XapI RAATTY 1 cut(s) 1030
XmnI GAANNNNTTC 2 cut(s) 828, 1041
XspI CTAG 2 cut(s) 792, 1202
Zsp2I ATGCAT 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.